data_3FCO # _model_server_result.job_id cQ58SwzDjruKfdvD0OsqZg _model_server_result.datetime_utc '2024-12-22 01:17:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3FCO # _exptl.entry_id 3FCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FCO _cell.length_a 109.185 _cell.length_b 109.185 _cell.length_c 135.869 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 297 n n PA O2A NAP sing 298 n n PA O5B NAP sing 299 n n PA O3 NAP sing 300 n n O2A HOA2 NAP sing 301 n n O5B C5B NAP sing 302 n n C5B C4B NAP sing 303 n n C5B H51A NAP sing 304 n n C5B H52A NAP sing 305 n n C4B O4B NAP sing 306 n n C4B C3B NAP sing 307 n n C4B H4B NAP sing 308 n n O4B C1B NAP sing 309 n n C3B O3B NAP sing 310 n n C3B C2B NAP sing 311 n n C3B H3B NAP sing 312 n n O3B HO3A NAP sing 313 n n C2B O2B NAP sing 314 n n C2B C1B NAP sing 315 n n C2B H2B NAP sing 316 n n O2B P2B NAP sing 317 n n C1B N9A NAP sing 318 n n C1B H1B NAP sing 319 n n N9A C8A NAP sing 320 n y N9A C4A NAP sing 321 n y C8A N7A NAP doub 322 n y C8A H8A NAP sing 323 n n N7A C5A NAP sing 324 n y C5A C6A NAP sing 325 n y C5A C4A NAP doub 326 n y C6A N6A NAP sing 327 n n C6A N1A NAP doub 328 n y N6A H61A NAP sing 329 n n N6A H62A NAP sing 330 n n N1A C2A NAP sing 331 n y C2A N3A NAP doub 332 n y C2A H2A NAP sing 333 n n N3A C4A NAP sing 334 n y O3 PN NAP sing 335 n n PN O1N NAP doub 336 n n PN O2N NAP sing 337 n n PN O5D NAP sing 338 n n O5D C5D NAP sing 339 n n C5D C4D NAP sing 340 n n C5D H51N NAP sing 341 n n C5D H52N NAP sing 342 n n C4D O4D NAP sing 343 n n C4D C3D NAP sing 344 n n C4D H4D NAP sing 345 n n O4D C1D NAP sing 346 n n C3D O3D NAP sing 347 n n C3D C2D NAP sing 348 n n C3D H3D NAP sing 349 n n O3D HO3N NAP sing 350 n n C2D O2D NAP sing 351 n n C2D C1D NAP sing 352 n n C2D H2D NAP sing 353 n n O2D HO2N NAP sing 354 n n C1D N1N NAP sing 355 n n C1D H1D NAP sing 356 n n N1N C2N NAP sing 357 n y N1N C6N NAP doub 358 n y C2N C3N NAP doub 359 n y C2N H2N NAP sing 360 n n C3N C7N NAP sing 361 n n C3N C4N NAP sing 362 n y C7N O7N NAP doub 363 n n C7N N7N NAP sing 364 n n N7N H71N NAP sing 365 n n N7N H72N NAP sing 366 n n C4N C5N NAP doub 367 n y C4N H4N NAP sing 368 n n C5N C6N NAP sing 369 n y C5N H5N NAP sing 370 n n C6N H6N NAP sing 371 n n P2B O1X NAP doub 372 n n P2B O2X NAP sing 373 n n P2B O3X NAP sing 374 n n O2X HOP2 NAP sing 375 n n O3X HOP3 NAP sing 376 n n # _atom_sites.entry_id 3FCO _atom_sites.fract_transf_matrix[1][1] 0.009159 _atom_sites.fract_transf_matrix[1][2] 0.005288 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 1 1 NAP NAP . D 3 IIG A 1 293 1 IIG LIG . E 2 NAP B 1 1 1 NAP NAP . F 3 IIG B 1 293 1 IIG LIG . G 4 HOH A 1 2 2 HOH HOH . G 4 HOH A 2 3 3 HOH HOH . G 4 HOH A 3 5 5 HOH HOH . G 4 HOH A 4 6 6 HOH HOH . G 4 HOH A 5 294 27 HOH HOH . G 4 HOH A 6 295 29 HOH HOH . G 4 HOH A 7 296 30 HOH HOH . G 4 HOH A 8 297 31 HOH HOH . G 4 HOH A 9 298 32 HOH HOH . G 4 HOH A 10 299 34 HOH HOH . G 4 HOH A 11 300 35 HOH HOH . G 4 HOH A 12 301 36 HOH HOH . G 4 HOH A 13 302 37 HOH HOH . G 4 HOH A 14 303 38 HOH HOH . G 4 HOH A 15 304 39 HOH HOH . G 4 HOH A 16 305 41 HOH HOH . G 4 HOH A 17 306 42 HOH HOH . G 4 HOH A 18 307 43 HOH HOH . G 4 HOH A 19 308 44 HOH HOH . G 4 HOH A 20 309 47 HOH HOH . G 4 HOH A 21 310 48 HOH HOH . G 4 HOH A 22 311 49 HOH HOH . G 4 HOH A 23 312 50 HOH HOH . G 4 HOH A 24 313 7 HOH HOH . G 4 HOH A 25 314 10 HOH HOH . G 4 HOH A 26 315 16 HOH HOH . G 4 HOH A 27 316 17 HOH HOH . G 4 HOH A 28 317 18 HOH HOH . G 4 HOH A 29 318 19 HOH HOH . G 4 HOH A 30 319 20 HOH HOH . G 4 HOH A 31 320 1 HOH HOH . G 4 HOH A 32 321 21 HOH HOH . G 4 HOH A 33 322 25 HOH HOH . H 4 HOH B 1 4 4 HOH HOH . H 4 HOH B 2 294 26 HOH HOH . H 4 HOH B 3 295 28 HOH HOH . H 4 HOH B 4 296 33 HOH HOH . H 4 HOH B 5 297 40 HOH HOH . H 4 HOH B 6 298 45 HOH HOH . H 4 HOH B 7 299 46 HOH HOH . H 4 HOH B 8 300 51 HOH HOH . H 4 HOH B 9 301 8 HOH HOH . H 4 HOH B 10 302 9 HOH HOH . H 4 HOH B 11 303 11 HOH HOH . H 4 HOH B 12 304 12 HOH HOH . H 4 HOH B 13 305 13 HOH HOH . H 4 HOH B 14 306 14 HOH HOH . H 4 HOH B 15 307 15 HOH HOH . H 4 HOH B 16 308 22 HOH HOH . H 4 HOH B 17 309 23 HOH HOH . H 4 HOH B 18 310 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 59.072 39.322 -3.774 1 56.66 ? PA NAP 1 A 1 HETATM 2 O O1A NAP . . . C 2 59.397 40.352 -4.788 1 55.27 ? O1A NAP 1 A 1 HETATM 3 O O2A NAP . . . C 2 59.361 37.896 -4.067 1 53.12 ? O2A NAP 1 A 1 HETATM 4 O O5B NAP . . . C 2 59.831 39.75 -2.424 1 57.83 ? O5B NAP 1 A 1 HETATM 5 C C5B NAP . . . C 2 59.891 38.925 -1.29 1 54.47 ? C5B NAP 1 A 1 HETATM 6 C C4B NAP . . . C 2 60.702 39.759 -0.34 1 55.21 ? C4B NAP 1 A 1 HETATM 7 O O4B NAP . . . C 2 60.644 39.178 0.938 1 56.86 ? O4B NAP 1 A 1 HETATM 8 C C3B NAP . . . C 2 62.158 39.738 -0.739 1 55.77 ? C3B NAP 1 A 1 HETATM 9 O O3B NAP . . . C 2 62.764 40.908 -0.25 1 57.69 ? O3B NAP 1 A 1 HETATM 10 C C2B NAP . . . C 2 62.711 38.613 0.08 1 54.68 ? C2B NAP 1 A 1 HETATM 11 O O2B NAP . . . C 2 64.099 38.785 0.247 1 57.01 ? O2B NAP 1 A 1 HETATM 12 C C1B NAP . . . C 2 61.932 38.844 1.365 1 52.3 ? C1B NAP 1 A 1 HETATM 13 N N9A NAP . . . C 2 61.899 37.62 2.159 1 48.75 ? N9A NAP 1 A 1 HETATM 14 C C8A NAP . . . C 2 61.668 36.341 1.706 1 48.65 ? C8A NAP 1 A 1 HETATM 15 N N7A NAP . . . C 2 61.783 35.508 2.78 1 48.36 ? N7A NAP 1 A 1 HETATM 16 C C5A NAP . . . C 2 62.11 36.256 3.872 1 47.38 ? C5A NAP 1 A 1 HETATM 17 C C6A NAP . . . C 2 62.337 35.927 5.201 1 47.12 ? C6A NAP 1 A 1 HETATM 18 N N6A NAP . . . C 2 62.279 34.653 5.584 1 48.67 ? N6A NAP 1 A 1 HETATM 19 N N1A NAP . . . C 2 62.643 36.899 6.117 1 45.2 ? N1A NAP 1 A 1 HETATM 20 C C2A NAP . . . C 2 62.732 38.218 5.705 1 47.69 ? C2A NAP 1 A 1 HETATM 21 N N3A NAP . . . C 2 62.496 38.54 4.385 1 47.85 ? N3A NAP 1 A 1 HETATM 22 C C4A NAP . . . C 2 62.188 37.573 3.491 1 46.31 ? C4A NAP 1 A 1 HETATM 23 O O3 NAP . . . C 2 57.495 39.414 -3.465 1 53.56 ? O3 NAP 1 A 1 HETATM 24 P PN NAP . . . C 2 56.316 40.381 -3.935 1 49.87 ? PN NAP 1 A 1 HETATM 25 O O1N NAP . . . C 2 56.829 41.747 -4.108 1 45.82 ? O1N NAP 1 A 1 HETATM 26 O O2N NAP . . . C 2 55.477 39.713 -4.963 1 49.88 ? O2N NAP 1 A 1 HETATM 27 O O5D NAP . . . C 2 55.358 40.318 -2.625 1 53.32 ? O5D NAP 1 A 1 HETATM 28 C C5D NAP . . . C 2 55.319 41.366 -1.653 1 50.55 ? C5D NAP 1 A 1 HETATM 29 C C4D NAP . . . C 2 53.997 41.319 -0.941 1 49.04 ? C4D NAP 1 A 1 HETATM 30 O O4D NAP . . . C 2 53.004 41.494 -1.904 1 47.01 ? O4D NAP 1 A 1 HETATM 31 C C3D NAP . . . C 2 53.725 39.968 -0.268 1 47.64 ? C3D NAP 1 A 1 HETATM 32 O O3D NAP . . . C 2 53.279 40.199 1.044 1 48.05 ? O3D NAP 1 A 1 HETATM 33 C C2D NAP . . . C 2 52.59 39.406 -1.057 1 47.33 ? C2D NAP 1 A 1 HETATM 34 O O2D NAP . . . C 2 51.671 38.516 -0.408 1 43.77 ? O2D NAP 1 A 1 HETATM 35 C C1D NAP . . . C 2 51.942 40.68 -1.515 1 47.74 ? C1D NAP 1 A 1 HETATM 36 N N1N NAP . . . C 2 51.207 40.283 -2.712 1 52.1 ? N1N NAP 1 A 1 HETATM 37 C C2N NAP . . . C 2 51.882 39.924 -3.833 1 51.57 ? C2N NAP 1 A 1 HETATM 38 C C3N NAP . . . C 2 51.162 39.527 -4.957 1 53.88 ? C3N NAP 1 A 1 HETATM 39 C C7N NAP . . . C 2 51.792 39.371 -6.334 1 52.63 ? C7N NAP 1 A 1 HETATM 40 O O7N NAP . . . C 2 50.977 38.848 -7.346 1 54.46 ? O7N NAP 1 A 1 HETATM 41 N N7N NAP . . . C 2 53.056 39.707 -6.584 1 49.59 ? N7N NAP 1 A 1 HETATM 42 C C4N NAP . . . C 2 49.78 39.506 -4.906 1 53.98 ? C4N NAP 1 A 1 HETATM 43 C C5N NAP . . . C 2 49.121 39.871 -3.75 1 54.75 ? C5N NAP 1 A 1 HETATM 44 C C6N NAP . . . C 2 49.854 40.252 -2.646 1 51.73 ? C6N NAP 1 A 1 HETATM 45 P P2B NAP . . . C 2 65.099 37.567 0.68 1 60.28 ? P2B NAP 1 A 1 HETATM 46 O O1X NAP . . . C 2 66.432 38.252 0.444 1 59.44 ? O1X NAP 1 A 1 HETATM 47 O O2X NAP . . . C 2 65.024 37.059 2.103 1 59.84 ? O2X NAP 1 A 1 HETATM 48 O O3X NAP . . . C 2 64.775 36.284 -0.041 1 56.79 ? O3X NAP 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #