data_3FDC # _model_server_result.job_id cFT2M_F6IaflruHi5nvOaw _model_server_result.datetime_utc '2024-11-09 02:34:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fdc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":129}' # _entry.id 3FDC # _exptl.entry_id 3FDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 585.462 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "iron(II) tetracyano-5-(2-Oxo-hexahydro-thieno[3,4-d]imidazol-6-yl)-pentanoic acid (4'-methyl-[2,2']bipyridinyl-4-ylmethyl)-amide" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FDC _cell.length_a 74.2 _cell.length_b 74.2 _cell.length_c 85.82 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -28.606667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? # _chem_comp.formula 'C26 H27 Fe N9 O2 S' _chem_comp.formula_weight 585.462 _chem_comp.id BTF _chem_comp.mon_nstd_flag . _chem_comp.name "iron(II) tetracyano-5-(2-Oxo-hexahydro-thieno[3,4-d]imidazol-6-yl)-pentanoic acid (4'-methyl-[2,2']bipyridinyl-4-ylmethyl)-amide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BTF doub 70 n y C1 C5 BTF sing 71 n y C2 C3 BTF sing 72 n y C3 N1 BTF doub 73 n y N1 C4 BTF sing 74 n y N1 FE1 BTF sing 75 n n C4 C5 BTF doub 76 n y C4 C9 BTF sing 77 n n C6 C7 BTF doub 78 n y C6 C10 BTF sing 79 n y C7 C8 BTF sing 80 n y C7 C15 BTF sing 81 n n C8 C9 BTF doub 82 n y C9 N2 BTF sing 83 n y N2 C10 BTF doub 84 n y N2 FE1 BTF sing 85 n n FE1 C11 BTF sing 86 n n FE1 C12 BTF sing 87 n n FE1 C13 BTF sing 88 n n FE1 C14 BTF sing 89 n n N3 C11 BTF trip 90 n n N4 C12 BTF trip 91 n n N5 C13 BTF trip 92 n n N6 C14 BTF trip 93 n n C15 N7 BTF sing 94 n n C16 C17 BTF sing 95 n n C16 C19 BTF sing 96 n n C17 C18 BTF sing 97 n n C18 N7 BTF sing 98 n n C18 O1 BTF doub 99 n n C19 C20 BTF sing 100 n n C20 C21 BTF sing 101 n n C21 C23 BTF sing 102 n n C21 S1 BTF sing 103 n n C22 C24 BTF sing 104 n n C22 S1 BTF sing 105 n n C23 C24 BTF sing 106 n n C23 N9 BTF sing 107 n n C24 N8 BTF sing 108 n n C25 O2 BTF doub 109 n n C25 N8 BTF sing 110 n n C25 N9 BTF sing 111 n n C1 C26 BTF sing 112 n n C2 H2 BTF sing 113 n n C3 H3 BTF sing 114 n n C5 H4 BTF sing 115 n n C6 H5 BTF sing 116 n n C8 H6 BTF sing 117 n n C10 H7 BTF sing 118 n n C15 H24 BTF sing 119 n n C15 H25 BTF sing 120 n n C16 H26 BTF sing 121 n n C16 H27 BTF sing 122 n n C17 H28 BTF sing 123 n n C17 H29 BTF sing 124 n n C19 H30 BTF sing 125 n n C19 H31 BTF sing 126 n n C20 H32 BTF sing 127 n n C20 H33 BTF sing 128 n n C21 H34 BTF sing 129 n n C22 H35 BTF sing 130 n n C22 H36 BTF sing 131 n n C23 H37 BTF sing 132 n n C24 H38 BTF sing 133 n n N7 H39 BTF sing 134 n n N8 H40 BTF sing 135 n n N9 H41 BTF sing 136 n n C26 H251 BTF sing 137 n n C26 H261 BTF sing 138 n n C26 H271 BTF sing 139 n n # _atom_sites.entry_id 3FDC _atom_sites.fract_transf_matrix[1][1] 0.013477 _atom_sites.fract_transf_matrix[1][2] 0.007781 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011652 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BTF A 1 129 1 BTF BTF . D 2 BTF B 1 129 1 BTF BTF . E 3 HOH A 1 130 125 HOH HOH . E 3 HOH A 2 402 402 HOH HOH . E 3 HOH A 3 403 403 HOH HOH . E 3 HOH A 4 404 404 HOH HOH . E 3 HOH A 5 405 405 HOH HOH . E 3 HOH A 6 406 406 HOH HOH . E 3 HOH A 7 408 408 HOH HOH . E 3 HOH A 8 410 410 HOH HOH . E 3 HOH A 9 412 412 HOH HOH . F 3 HOH B 1 130 129 HOH HOH . F 3 HOH B 2 131 131 HOH HOH . F 3 HOH B 3 413 413 HOH HOH . F 3 HOH B 4 414 414 HOH HOH . F 3 HOH B 5 418 418 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 BTF . . . C 2 22.728 -32.443 -9.626 1 20 ? C6 BTF 129 A 1 HETATM 2 C C7 BTF . . . C 2 23.149 -31.601 -8.427 1 20 ? C7 BTF 129 A 1 HETATM 3 C C8 BTF . . . C 2 24.604 -31.636 -7.978 1 20 ? C8 BTF 129 A 1 HETATM 4 C C9 BTF . . . C 2 25.602 -32.509 -8.733 1 20 ? C9 BTF 129 A 1 HETATM 5 N N2 BTF . . . C 2 25.136 -33.312 -9.893 1 20 ? N2 BTF 129 A 1 HETATM 6 C C10 BTF . . . C 2 23.721 -33.291 -10.349 1 20 ? C10 BTF 129 A 1 HETATM 7 C C15 BTF . . . C 2 22.116 -30.722 -7.645 1 20 ? C15 BTF 129 A 1 HETATM 8 C C16 BTF . . . C 2 20.134 -29.877 -3.302 1 20 ? C16 BTF 129 A 1 HETATM 9 C C17 BTF . . . C 2 21.44 -29.778 -4.073 1 20 ? C17 BTF 129 A 1 HETATM 10 C C18 BTF . . . C 2 21.198 -30.005 -5.473 1 20 ? C18 BTF 129 A 1 HETATM 11 C C19 BTF . . . C 2 19.621 -28.166 -3.025 1 20 ? C19 BTF 129 A 1 HETATM 12 C C20 BTF . . . C 2 18.052 -28.29 -2.821 1 20 ? C20 BTF 129 A 1 HETATM 13 C C21 BTF . . . C 2 17.007 -27.439 -3.672 1 20 ? C21 BTF 129 A 1 HETATM 14 C C22 BTF . . . C 2 15.293 -25.727 -4.412 1 20 ? C22 BTF 129 A 1 HETATM 15 C C23 BTF . . . C 2 15.569 -27.707 -3.128 1 20 ? C23 BTF 129 A 1 HETATM 16 C C24 BTF . . . C 2 14.525 -26.711 -3.573 1 20 ? C24 BTF 129 A 1 HETATM 17 C C25 BTF . . . C 2 14.523 -26.721 -1.185 1 20 ? C25 BTF 129 A 1 HETATM 18 N N7 BTF . . . C 2 22.193 -30.403 -6.202 1 20 ? N7 BTF 129 A 1 HETATM 19 O O1 BTF . . . C 2 20.039 -29.737 -5.974 1 20 ? O1 BTF 129 A 1 HETATM 20 O O2 BTF . . . C 2 14.253 -26.474 0.015 1 20 ? O2 BTF 129 A 1 HETATM 21 N N8 BTF . . . C 2 13.966 -26.188 -2.297 1 20 ? N8 BTF 129 A 1 HETATM 22 N N9 BTF . . . C 2 15.47 -27.617 -1.627 1 20 ? N9 BTF 129 A 1 HETATM 23 S S1 BTF . . . C 2 16.948 -25.611 -3.621 1 20 ? S1 BTF 129 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #