data_3FDC
#
_model_server_result.job_id            Wftgma5d0J-Hy3QJhZcAIg 
_model_server_result.datetime_utc      '2024-12-22 03:16:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fdc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":129}' 
#
_entry.id    3FDC 
#
_exptl.entry_id    3FDC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              585.462 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "iron(II) tetracyano-5-(2-Oxo-hexahydro-thieno[3,4-d]imidazol-6-yl)-pentanoic acid (4'-methyl-[2,2']bipyridinyl-4-ylmethyl)-amide" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3FDC 
_cell.length_a            74.2 
_cell.length_b            74.2 
_cell.length_c            85.82 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FDC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -28.606667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
#
_chem_comp.formula           'C26 H27 Fe N9 O2 S' 
_chem_comp.formula_weight    585.462 
_chem_comp.id                BTF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "iron(II) tetracyano-5-(2-Oxo-hexahydro-thieno[3,4-d]imidazol-6-yl)-pentanoic acid (4'-methyl-[2,2']bipyridinyl-4-ylmethyl)-amide" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BTF doub 70 n y 
C1 C5 BTF sing 71 n y 
C2 C3 BTF sing 72 n y 
C3 N1 BTF doub 73 n y 
N1 C4 BTF sing 74 n y 
N1 FE1 BTF sing 75 n n 
C4 C5 BTF doub 76 n y 
C4 C9 BTF sing 77 n n 
C6 C7 BTF doub 78 n y 
C6 C10 BTF sing 79 n y 
C7 C8 BTF sing 80 n y 
C7 C15 BTF sing 81 n n 
C8 C9 BTF doub 82 n y 
C9 N2 BTF sing 83 n y 
N2 C10 BTF doub 84 n y 
N2 FE1 BTF sing 85 n n 
FE1 C11 BTF sing 86 n n 
FE1 C12 BTF sing 87 n n 
FE1 C13 BTF sing 88 n n 
FE1 C14 BTF sing 89 n n 
N3 C11 BTF trip 90 n n 
N4 C12 BTF trip 91 n n 
N5 C13 BTF trip 92 n n 
N6 C14 BTF trip 93 n n 
C15 N7 BTF sing 94 n n 
C16 C17 BTF sing 95 n n 
C16 C19 BTF sing 96 n n 
C17 C18 BTF sing 97 n n 
C18 N7 BTF sing 98 n n 
C18 O1 BTF doub 99 n n 
C19 C20 BTF sing 100 n n 
C20 C21 BTF sing 101 n n 
C21 C23 BTF sing 102 n n 
C21 S1 BTF sing 103 n n 
C22 C24 BTF sing 104 n n 
C22 S1 BTF sing 105 n n 
C23 C24 BTF sing 106 n n 
C23 N9 BTF sing 107 n n 
C24 N8 BTF sing 108 n n 
C25 O2 BTF doub 109 n n 
C25 N8 BTF sing 110 n n 
C25 N9 BTF sing 111 n n 
C1 C26 BTF sing 112 n n 
C2 H2 BTF sing 113 n n 
C3 H3 BTF sing 114 n n 
C5 H4 BTF sing 115 n n 
C6 H5 BTF sing 116 n n 
C8 H6 BTF sing 117 n n 
C10 H7 BTF sing 118 n n 
C15 H24 BTF sing 119 n n 
C15 H25 BTF sing 120 n n 
C16 H26 BTF sing 121 n n 
C16 H27 BTF sing 122 n n 
C17 H28 BTF sing 123 n n 
C17 H29 BTF sing 124 n n 
C19 H30 BTF sing 125 n n 
C19 H31 BTF sing 126 n n 
C20 H32 BTF sing 127 n n 
C20 H33 BTF sing 128 n n 
C21 H34 BTF sing 129 n n 
C22 H35 BTF sing 130 n n 
C22 H36 BTF sing 131 n n 
C23 H37 BTF sing 132 n n 
C24 H38 BTF sing 133 n n 
N7 H39 BTF sing 134 n n 
N8 H40 BTF sing 135 n n 
N9 H41 BTF sing 136 n n 
C26 H251 BTF sing 137 n n 
C26 H261 BTF sing 138 n n 
C26 H271 BTF sing 139 n n 
#
_atom_sites.entry_id                     3FDC 
_atom_sites.fract_transf_matrix[1][1]    0.013477 
_atom_sites.fract_transf_matrix[1][2]    0.007781 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015562 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011652 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BTF A 1 129 1 BTF BTF . 
D 2 BTF B 1 129 1 BTF BTF . 
E 3 HOH A 1 130 125 HOH HOH . 
E 3 HOH A 2 402 402 HOH HOH . 
E 3 HOH A 3 403 403 HOH HOH . 
E 3 HOH A 4 404 404 HOH HOH . 
E 3 HOH A 5 405 405 HOH HOH . 
E 3 HOH A 6 406 406 HOH HOH . 
E 3 HOH A 7 408 408 HOH HOH . 
E 3 HOH A 8 410 410 HOH HOH . 
E 3 HOH A 9 412 412 HOH HOH . 
F 3 HOH B 1 130 129 HOH HOH . 
F 3 HOH B 2 131 131 HOH HOH . 
F 3 HOH B 3 413 413 HOH HOH . 
F 3 HOH B 4 414 414 HOH HOH . 
F 3 HOH B 5 418 418 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BTF . . . D 2 7.373 0.588 -5.461 1 84.18 ? C1 BTF 129 B 1 
HETATM 2 C C2 BTF . . . D 2 6.045 1.239 -5.256 1 85.27 ? C2 BTF 129 B 1 
HETATM 3 C C3 BTF . . . D 2 4.91 0.96 -6.253 1 86.03 ? C3 BTF 129 B 1 
HETATM 4 N N1 BTF . . . D 2 5.163 0.078 -7.352 1 87.63 ? N1 BTF 129 B 1 
HETATM 5 C C4 BTF . . . D 2 6.482 -0.567 -7.544 1 86.45 ? C4 BTF 129 B 1 
HETATM 6 C C5 BTF . . . D 2 7.596 -0.295 -6.578 1 84.84 ? C5 BTF 129 B 1 
HETATM 7 C C6 BTF . . . D 2 6.672 -3.282 -11.134 1 84.31 ? C6 BTF 129 B 1 
HETATM 8 C C7 BTF . . . D 2 7.904 -3.111 -10.268 1 81.24 ? C7 BTF 129 B 1 
HETATM 9 C C8 BTF . . . D 2 7.867 -2.221 -9.08 1 83.25 ? C8 BTF 129 B 1 
HETATM 10 C C9 BTF . . . D 2 6.62 -1.491 -8.744 1 85.89 ? C9 BTF 129 B 1 
HETATM 11 N N2 BTF . . . D 2 5.431 -1.665 -9.598 1 88.1 ? N2 BTF 129 B 1 
HETATM 12 C C10 BTF . . . D 2 5.441 -2.554 -10.791 1 86.71 ? C10 BTF 129 B 1 
HETATM 13 FE FE1 BTF . . . D 2 3.796 -0.488 -8.855 1 89.75 ? FE1 BTF 129 B 1 
HETATM 14 N N3 BTF . . . D 2 1.286 -1.36 -11.019 1 87.92 ? N3 BTF 129 B 1 
HETATM 15 C C11 BTF . . . D 2 2.337 -1.022 -10.249 1 88.9 ? C11 BTF 129 B 1 
HETATM 16 N N4 BTF . . . D 2 0.935 1.264 -7.937 1 92.48 ? N4 BTF 129 B 1 
HETATM 17 C C12 BTF . . . D 2 2.113 0.578 -8.228 1 90.75 ? C12 BTF 129 B 1 
HETATM 18 N N5 BTF . . . D 2 4.163 2.091 -11.104 1 86.84 ? N5 BTF 129 B 1 
HETATM 19 C C13 BTF . . . D 2 4.114 1.07 -10.197 1 88.29 ? C13 BTF 129 B 1 
HETATM 20 N N6 BTF . . . D 2 3.185 -3.378 -7.004 1 87.64 ? N6 BTF 129 B 1 
HETATM 21 C C14 BTF . . . D 2 3.369 -2.201 -7.699 1 89.34 ? C14 BTF 129 B 1 
HETATM 22 C C15 BTF . . . D 2 9.229 -3.839 -10.587 1 75.68 ? C15 BTF 129 B 1 
HETATM 23 C C16 BTF . . . D 2 12.704 -3.908 -11.61 1 58.4 ? C16 BTF 129 B 1 
HETATM 24 C C17 BTF . . . D 2 12.593 -2.684 -10.744 1 62.25 ? C17 BTF 129 B 1 
HETATM 25 C C18 BTF . . . D 2 11.139 -2.524 -10.295 1 66.46 ? C18 BTF 129 B 1 
HETATM 26 C C19 BTF . . . D 2 13.972 -3.217 -12.762 1 55.7 ? C19 BTF 129 B 1 
HETATM 27 C C20 BTF . . . D 2 15.494 -3.842 -13.028 1 52.46 ? C20 BTF 129 B 1 
HETATM 28 C C21 BTF . . . D 2 15.291 -5.345 -13.453 1 49.7 ? C21 BTF 129 B 1 
HETATM 29 C C22 BTF . . . D 2 15.774 -7.818 -13.9 1 48.34 ? C22 BTF 129 B 1 
HETATM 30 C C23 BTF . . . D 2 16.103 -5.607 -14.756 1 47.64 ? C23 BTF 129 B 1 
HETATM 31 C C24 BTF . . . D 2 16.385 -7.057 -15.043 1 46.68 ? C24 BTF 129 B 1 
HETATM 32 C C25 BTF . . . D 2 18.476 -5.936 -14.994 1 44.16 ? C25 BTF 129 B 1 
HETATM 33 N N7 BTF . . . D 2 10.152 -2.941 -11.092 1 68.79 ? N7 BTF 129 B 1 
HETATM 34 O O1 BTF . . . D 2 10.84 -2.161 -9.066 1 68.3 ? O1 BTF 129 B 1 
HETATM 35 O O2 BTF . . . D 2 19.696 -5.69 -15.044 1 40.17 ? O2 BTF 129 B 1 
HETATM 36 N N8 BTF . . . D 2 17.862 -7.112 -15.162 1 45.37 ? N8 BTF 129 B 1 
HETATM 37 N N9 BTF . . . D 2 17.49 -5.027 -14.751 1 46.37 ? N9 BTF 129 B 1 
HETATM 38 S S1 BTF . . . D 2 15.937 -6.728 -12.442 1 50.05 ? S1 BTF 129 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           38 
#