data_3FDO # _model_server_result.job_id '_v4mwVbMBltn2LSwbkozTg' _model_server_result.datetime_utc '2024-11-05 01:25:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":4}' # _entry.id 3FDO # _exptl.entry_id 3FDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.41 _cell.angle_gamma 90 _cell.entry_id 3FDO _cell.length_a 69.23 _cell.length_b 30.95 _cell.length_c 50.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PISA,PQS monomeric 1 author_and_software_defined_assembly 2 PISA tetrameric 4 software_defined_assembly 3 PISA tetrameric 4 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1 B,F,G,I 2 1 A,B,C,D,E,F,G,H,I 3 1,2 A,C,D,E,H 4 1,2 B,F,G,I 4 3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 3_545 x+1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 34.615 -15.475 0 4 'crystal symmetry operation' 4_445 -x-1/2,y-1/2,-z -1 0 0 0 1 0 0 0 -1 -34.615 -15.475 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H O HOH . A HOH 113 1_555 G MG MG . B MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc2 H O HOH . A HOH 197 1_555 G MG MG . B MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc3 H O HOH . A HOH 224 1_555 F MG MG . B MG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3FDO _atom_sites.fract_transf_matrix[1][1] 0.014445 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009893 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 4 4 MG MG . D 3 MG A 1 5 5 MG MG . E 3 MG A 1 6 6 MG MG . F 3 MG B 1 2 2 MG MG . G 3 MG B 1 3 3 MG MG . H 4 HOH A 1 7 7 HOH HOH . H 4 HOH A 2 9 9 HOH HOH . H 4 HOH A 3 10 10 HOH HOH . H 4 HOH A 4 11 11 HOH HOH . H 4 HOH A 5 12 12 HOH HOH . H 4 HOH A 6 15 15 HOH HOH . H 4 HOH A 7 16 16 HOH HOH . H 4 HOH A 8 18 18 HOH HOH . H 4 HOH A 9 19 19 HOH HOH . H 4 HOH A 10 20 20 HOH HOH . H 4 HOH A 11 21 21 HOH HOH . H 4 HOH A 12 112 112 HOH HOH . H 4 HOH A 13 113 113 HOH HOH . H 4 HOH A 14 114 22 HOH HOH . H 4 HOH A 15 115 23 HOH HOH . H 4 HOH A 16 116 116 HOH HOH . H 4 HOH A 17 117 117 HOH HOH . H 4 HOH A 18 118 118 HOH HOH . H 4 HOH A 19 119 119 HOH HOH . H 4 HOH A 20 120 120 HOH HOH . H 4 HOH A 21 121 121 HOH HOH . H 4 HOH A 22 122 122 HOH HOH . H 4 HOH A 23 123 123 HOH HOH . H 4 HOH A 24 124 124 HOH HOH . H 4 HOH A 25 125 24 HOH HOH . H 4 HOH A 26 126 126 HOH HOH . H 4 HOH A 27 127 127 HOH HOH . H 4 HOH A 28 128 128 HOH HOH . H 4 HOH A 29 129 129 HOH HOH . H 4 HOH A 30 130 130 HOH HOH . H 4 HOH A 31 131 131 HOH HOH . H 4 HOH A 32 132 132 HOH HOH . H 4 HOH A 33 133 133 HOH HOH . H 4 HOH A 34 134 134 HOH HOH . H 4 HOH A 35 135 135 HOH HOH . H 4 HOH A 36 136 136 HOH HOH . H 4 HOH A 37 137 137 HOH HOH . H 4 HOH A 38 138 138 HOH HOH . H 4 HOH A 39 139 139 HOH HOH . H 4 HOH A 40 140 140 HOH HOH . H 4 HOH A 41 141 141 HOH HOH . H 4 HOH A 42 142 142 HOH HOH . H 4 HOH A 43 143 143 HOH HOH . H 4 HOH A 44 144 144 HOH HOH . H 4 HOH A 45 145 145 HOH HOH . H 4 HOH A 46 146 25 HOH HOH . H 4 HOH A 47 147 147 HOH HOH . H 4 HOH A 48 148 148 HOH HOH . H 4 HOH A 49 149 149 HOH HOH . H 4 HOH A 50 150 26 HOH HOH . H 4 HOH A 51 151 27 HOH HOH . H 4 HOH A 52 152 152 HOH HOH . H 4 HOH A 53 153 153 HOH HOH . H 4 HOH A 54 154 154 HOH HOH . H 4 HOH A 55 155 30 HOH HOH . H 4 HOH A 56 156 156 HOH HOH . H 4 HOH A 57 157 31 HOH HOH . H 4 HOH A 58 158 158 HOH HOH . H 4 HOH A 59 159 159 HOH HOH . H 4 HOH A 60 160 160 HOH HOH . H 4 HOH A 61 161 33 HOH HOH . H 4 HOH A 62 162 162 HOH HOH . H 4 HOH A 63 163 163 HOH HOH . H 4 HOH A 64 164 164 HOH HOH . H 4 HOH A 65 165 165 HOH HOH . H 4 HOH A 66 166 166 HOH HOH . H 4 HOH A 67 167 167 HOH HOH . H 4 HOH A 68 168 168 HOH HOH . H 4 HOH A 69 169 169 HOH HOH . H 4 HOH A 70 170 170 HOH HOH . H 4 HOH A 71 171 171 HOH HOH . H 4 HOH A 72 172 35 HOH HOH . H 4 HOH A 73 173 173 HOH HOH . H 4 HOH A 74 174 174 HOH HOH . H 4 HOH A 75 175 36 HOH HOH . H 4 HOH A 76 176 37 HOH HOH . H 4 HOH A 77 177 177 HOH HOH . H 4 HOH A 78 178 178 HOH HOH . H 4 HOH A 79 179 179 HOH HOH . H 4 HOH A 80 180 180 HOH HOH . H 4 HOH A 81 181 39 HOH HOH . H 4 HOH A 82 182 182 HOH HOH . H 4 HOH A 83 183 183 HOH HOH . H 4 HOH A 84 184 41 HOH HOH . H 4 HOH A 85 185 42 HOH HOH . H 4 HOH A 86 186 44 HOH HOH . H 4 HOH A 87 187 187 HOH HOH . H 4 HOH A 88 188 45 HOH HOH . H 4 HOH A 89 189 46 HOH HOH . H 4 HOH A 90 190 190 HOH HOH . H 4 HOH A 91 191 191 HOH HOH . H 4 HOH A 92 192 47 HOH HOH . H 4 HOH A 93 193 48 HOH HOH . H 4 HOH A 94 194 50 HOH HOH . H 4 HOH A 95 195 195 HOH HOH . H 4 HOH A 96 196 196 HOH HOH . H 4 HOH A 97 197 52 HOH HOH . H 4 HOH A 98 198 54 HOH HOH . H 4 HOH A 99 199 55 HOH HOH . H 4 HOH A 100 200 57 HOH HOH . H 4 HOH A 101 201 59 HOH HOH . H 4 HOH A 102 202 60 HOH HOH . H 4 HOH A 103 203 61 HOH HOH . H 4 HOH A 104 204 63 HOH HOH . H 4 HOH A 105 205 64 HOH HOH . H 4 HOH A 106 206 65 HOH HOH . H 4 HOH A 107 207 66 HOH HOH . H 4 HOH A 108 208 67 HOH HOH . H 4 HOH A 109 209 68 HOH HOH . H 4 HOH A 110 210 69 HOH HOH . H 4 HOH A 111 211 71 HOH HOH . H 4 HOH A 112 212 73 HOH HOH . H 4 HOH A 113 213 74 HOH HOH . H 4 HOH A 114 214 76 HOH HOH . H 4 HOH A 115 215 78 HOH HOH . H 4 HOH A 116 216 79 HOH HOH . H 4 HOH A 117 217 80 HOH HOH . H 4 HOH A 118 218 81 HOH HOH . H 4 HOH A 119 219 83 HOH HOH . H 4 HOH A 120 220 84 HOH HOH . H 4 HOH A 121 221 85 HOH HOH . H 4 HOH A 122 222 86 HOH HOH . H 4 HOH A 123 223 87 HOH HOH . H 4 HOH A 124 224 88 HOH HOH . H 4 HOH A 125 225 89 HOH HOH . H 4 HOH A 126 226 90 HOH HOH . H 4 HOH A 127 227 92 HOH HOH . H 4 HOH A 128 228 93 HOH HOH . H 4 HOH A 129 229 94 HOH HOH . H 4 HOH A 130 230 95 HOH HOH . H 4 HOH A 131 231 97 HOH HOH . H 4 HOH A 132 232 99 HOH HOH . H 4 HOH A 133 233 100 HOH HOH . H 4 HOH A 134 234 101 HOH HOH . H 4 HOH A 135 235 102 HOH HOH . H 4 HOH A 136 236 103 HOH HOH . H 4 HOH A 137 237 104 HOH HOH . H 4 HOH A 138 238 105 HOH HOH . H 4 HOH A 139 239 106 HOH HOH . H 4 HOH A 140 240 107 HOH HOH . H 4 HOH A 141 241 109 HOH HOH . H 4 HOH A 142 242 110 HOH HOH . I 4 HOH B 1 8 8 HOH HOH . I 4 HOH B 2 13 13 HOH HOH . I 4 HOH B 3 14 14 HOH HOH . I 4 HOH B 4 29 29 HOH HOH . I 4 HOH B 5 30 17 HOH HOH . I 4 HOH B 6 31 28 HOH HOH . I 4 HOH B 7 32 32 HOH HOH . I 4 HOH B 8 34 34 HOH HOH . I 4 HOH B 9 40 40 HOH HOH . I 4 HOH B 10 43 43 HOH HOH . I 4 HOH B 11 49 49 HOH HOH . I 4 HOH B 12 51 51 HOH HOH . I 4 HOH B 13 53 53 HOH HOH . I 4 HOH B 14 56 56 HOH HOH . I 4 HOH B 15 58 58 HOH HOH . I 4 HOH B 16 62 62 HOH HOH . I 4 HOH B 17 70 70 HOH HOH . I 4 HOH B 18 77 77 HOH HOH . I 4 HOH B 19 82 82 HOH HOH . I 4 HOH B 20 96 96 HOH HOH . I 4 HOH B 21 111 111 HOH HOH . I 4 HOH B 22 125 125 HOH HOH . I 4 HOH B 23 175 175 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 2.296 _atom_site.Cartn_y 8.296 _atom_site.Cartn_z -13.605 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 4 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #