data_3FDZ
#
_model_server_result.job_id            CKopgCIo2AsHq-zz0ENL5g 
_model_server_result.datetime_utc      '2024-11-17 08:32:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fdz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    3FDZ 
#
_exptl.entry_id    3FDZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              106.12 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI(HYDROXYETHYL)ETHER 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         106.03 
_cell.angle_beta          91.54 
_cell.angle_gamma         107.5 
_cell.entry_id            3FDZ 
_cell.length_a            44.39 
_cell.length_b            48.48 
_cell.length_c            62.09 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FDZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,C,D,G 2 1 
A,C,D,G 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ARG 16 B ARG 8 1_555 B N NEP 17 B NEP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 B C NEP 17 B NEP 9 1_555 B N GLY 18 B GLY 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
#
_chem_comp.formula           'C4 H10 O3' 
_chem_comp.formula_weight    106.12 
_chem_comp.id                PEG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI(HYDROXYETHYL)ETHER 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEG sing 301 n n 
C1 C2 PEG sing 302 n n 
C1 H11 PEG sing 303 n n 
C1 H12 PEG sing 304 n n 
O1 HO1 PEG sing 305 n n 
C2 O2 PEG sing 306 n n 
C2 H21 PEG sing 307 n n 
C2 H22 PEG sing 308 n n 
O2 C3 PEG sing 309 n n 
C3 C4 PEG sing 310 n n 
C3 H31 PEG sing 311 n n 
C3 H32 PEG sing 312 n n 
C4 O4 PEG sing 313 n n 
C4 H41 PEG sing 314 n n 
C4 H42 PEG sing 315 n n 
O4 HO4 PEG sing 316 n n 
#
_atom_sites.entry_id                     3FDZ 
_atom_sites.fract_transf_matrix[1][1]    0.022528 
_atom_sites.fract_transf_matrix[1][2]    0.007103 
_atom_sites.fract_transf_matrix[1][3]    0.002853 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021628 
_atom_sites.fract_transf_matrix[2][3]    0.006755 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 DG2 A 1 1001 1001 DG2 DG2 . 
D 4 PEG A 1 1002 1002 PEG PEG . 
E 5 3PG B 1 1001 1001 3PG 3PG . 
F 4 PEG B 1 1002 1002 PEG PEG . 
G 6 HOH A 1 250 1 HOH HOH . 
G 6 HOH A 2 251 5 HOH HOH . 
G 6 HOH A 3 252 6 HOH HOH . 
G 6 HOH A 4 253 9 HOH HOH . 
G 6 HOH A 5 254 12 HOH HOH . 
G 6 HOH A 6 255 14 HOH HOH . 
G 6 HOH A 7 256 17 HOH HOH . 
G 6 HOH A 8 257 25 HOH HOH . 
G 6 HOH A 9 258 29 HOH HOH . 
G 6 HOH A 10 259 32 HOH HOH . 
G 6 HOH A 11 260 39 HOH HOH . 
G 6 HOH A 12 261 41 HOH HOH . 
G 6 HOH A 13 262 42 HOH HOH . 
G 6 HOH A 14 263 43 HOH HOH . 
G 6 HOH A 15 264 46 HOH HOH . 
G 6 HOH A 16 265 48 HOH HOH . 
G 6 HOH A 17 266 50 HOH HOH . 
G 6 HOH A 18 267 51 HOH HOH . 
G 6 HOH A 19 268 52 HOH HOH . 
G 6 HOH A 20 269 54 HOH HOH . 
G 6 HOH A 21 270 58 HOH HOH . 
G 6 HOH A 22 271 62 HOH HOH . 
G 6 HOH A 23 272 63 HOH HOH . 
G 6 HOH A 24 273 64 HOH HOH . 
G 6 HOH A 25 274 65 HOH HOH . 
G 6 HOH A 26 275 66 HOH HOH . 
G 6 HOH A 27 276 70 HOH HOH . 
G 6 HOH A 28 277 72 HOH HOH . 
G 6 HOH A 29 278 73 HOH HOH . 
G 6 HOH A 30 279 75 HOH HOH . 
G 6 HOH A 31 280 79 HOH HOH . 
G 6 HOH A 32 281 80 HOH HOH . 
G 6 HOH A 33 282 81 HOH HOH . 
G 6 HOH A 34 283 82 HOH HOH . 
G 6 HOH A 35 284 85 HOH HOH . 
G 6 HOH A 36 285 87 HOH HOH . 
G 6 HOH A 37 286 88 HOH HOH . 
G 6 HOH A 38 287 89 HOH HOH . 
G 6 HOH A 39 288 90 HOH HOH . 
G 6 HOH A 40 289 91 HOH HOH . 
G 6 HOH A 41 290 92 HOH HOH . 
G 6 HOH A 42 291 93 HOH HOH . 
G 6 HOH A 43 292 96 HOH HOH . 
G 6 HOH A 44 293 98 HOH HOH . 
G 6 HOH A 45 294 99 HOH HOH . 
G 6 HOH A 46 295 100 HOH HOH . 
G 6 HOH A 47 296 104 HOH HOH . 
G 6 HOH A 48 297 106 HOH HOH . 
G 6 HOH A 49 298 107 HOH HOH . 
G 6 HOH A 50 299 112 HOH HOH . 
G 6 HOH A 51 300 114 HOH HOH . 
G 6 HOH A 52 301 117 HOH HOH . 
G 6 HOH A 53 302 120 HOH HOH . 
G 6 HOH A 54 303 121 HOH HOH . 
G 6 HOH A 55 304 122 HOH HOH . 
G 6 HOH A 56 305 123 HOH HOH . 
G 6 HOH A 57 306 124 HOH HOH . 
G 6 HOH A 58 307 129 HOH HOH . 
G 6 HOH A 59 308 130 HOH HOH . 
G 6 HOH A 60 309 131 HOH HOH . 
G 6 HOH A 61 310 135 HOH HOH . 
G 6 HOH A 62 311 137 HOH HOH . 
G 6 HOH A 63 312 138 HOH HOH . 
G 6 HOH A 64 313 141 HOH HOH . 
G 6 HOH A 65 314 143 HOH HOH . 
G 6 HOH A 66 315 144 HOH HOH . 
G 6 HOH A 67 316 146 HOH HOH . 
G 6 HOH A 68 317 149 HOH HOH . 
G 6 HOH A 69 318 150 HOH HOH . 
G 6 HOH A 70 319 151 HOH HOH . 
G 6 HOH A 71 320 152 HOH HOH . 
G 6 HOH A 72 321 155 HOH HOH . 
G 6 HOH A 73 322 156 HOH HOH . 
G 6 HOH A 74 323 157 HOH HOH . 
G 6 HOH A 75 324 160 HOH HOH . 
G 6 HOH A 76 325 162 HOH HOH . 
G 6 HOH A 77 326 164 HOH HOH . 
G 6 HOH A 78 327 166 HOH HOH . 
G 6 HOH A 79 328 167 HOH HOH . 
G 6 HOH A 80 329 168 HOH HOH . 
G 6 HOH A 81 330 170 HOH HOH . 
G 6 HOH A 82 331 171 HOH HOH . 
G 6 HOH A 83 332 172 HOH HOH . 
G 6 HOH A 84 333 173 HOH HOH . 
G 6 HOH A 85 334 174 HOH HOH . 
G 6 HOH A 86 335 175 HOH HOH . 
G 6 HOH A 87 336 180 HOH HOH . 
G 6 HOH A 88 337 182 HOH HOH . 
G 6 HOH A 89 338 183 HOH HOH . 
G 6 HOH A 90 339 184 HOH HOH . 
G 6 HOH A 91 340 185 HOH HOH . 
G 6 HOH A 92 341 186 HOH HOH . 
G 6 HOH A 93 342 187 HOH HOH . 
G 6 HOH A 94 343 191 HOH HOH . 
G 6 HOH A 95 344 193 HOH HOH . 
G 6 HOH A 96 345 194 HOH HOH . 
G 6 HOH A 97 347 196 HOH HOH . 
G 6 HOH A 98 348 197 HOH HOH . 
G 6 HOH A 99 349 213 HOH HOH . 
G 6 HOH A 100 350 214 HOH HOH . 
G 6 HOH A 101 351 215 HOH HOH . 
G 6 HOH A 102 352 216 HOH HOH . 
G 6 HOH A 103 353 217 HOH HOH . 
G 6 HOH A 104 354 218 HOH HOH . 
G 6 HOH A 105 355 223 HOH HOH . 
H 6 HOH B 1 250 2 HOH HOH . 
H 6 HOH B 2 251 3 HOH HOH . 
H 6 HOH B 3 252 4 HOH HOH . 
H 6 HOH B 4 253 7 HOH HOH . 
H 6 HOH B 5 254 8 HOH HOH . 
H 6 HOH B 6 255 10 HOH HOH . 
H 6 HOH B 7 256 11 HOH HOH . 
H 6 HOH B 8 257 13 HOH HOH . 
H 6 HOH B 9 258 15 HOH HOH . 
H 6 HOH B 10 259 16 HOH HOH . 
H 6 HOH B 11 260 18 HOH HOH . 
H 6 HOH B 12 261 19 HOH HOH . 
H 6 HOH B 13 262 20 HOH HOH . 
H 6 HOH B 14 263 21 HOH HOH . 
H 6 HOH B 15 264 22 HOH HOH . 
H 6 HOH B 16 265 23 HOH HOH . 
H 6 HOH B 17 266 24 HOH HOH . 
H 6 HOH B 18 267 26 HOH HOH . 
H 6 HOH B 19 268 27 HOH HOH . 
H 6 HOH B 20 269 28 HOH HOH . 
H 6 HOH B 21 270 30 HOH HOH . 
H 6 HOH B 22 271 31 HOH HOH . 
H 6 HOH B 23 272 33 HOH HOH . 
H 6 HOH B 24 273 34 HOH HOH . 
H 6 HOH B 25 274 35 HOH HOH . 
H 6 HOH B 26 275 36 HOH HOH . 
H 6 HOH B 27 276 37 HOH HOH . 
H 6 HOH B 28 277 38 HOH HOH . 
H 6 HOH B 29 278 40 HOH HOH . 
H 6 HOH B 30 279 44 HOH HOH . 
H 6 HOH B 31 280 45 HOH HOH . 
H 6 HOH B 32 281 47 HOH HOH . 
H 6 HOH B 33 282 49 HOH HOH . 
H 6 HOH B 34 283 53 HOH HOH . 
H 6 HOH B 35 284 55 HOH HOH . 
H 6 HOH B 36 285 56 HOH HOH . 
H 6 HOH B 37 286 57 HOH HOH . 
H 6 HOH B 38 287 59 HOH HOH . 
H 6 HOH B 39 288 60 HOH HOH . 
H 6 HOH B 40 289 61 HOH HOH . 
H 6 HOH B 41 290 67 HOH HOH . 
H 6 HOH B 42 291 68 HOH HOH . 
H 6 HOH B 43 292 69 HOH HOH . 
H 6 HOH B 44 293 71 HOH HOH . 
H 6 HOH B 45 294 74 HOH HOH . 
H 6 HOH B 46 295 76 HOH HOH . 
H 6 HOH B 47 296 77 HOH HOH . 
H 6 HOH B 48 297 78 HOH HOH . 
H 6 HOH B 49 298 83 HOH HOH . 
H 6 HOH B 50 299 84 HOH HOH . 
H 6 HOH B 51 300 86 HOH HOH . 
H 6 HOH B 52 301 94 HOH HOH . 
H 6 HOH B 53 302 95 HOH HOH . 
H 6 HOH B 54 303 97 HOH HOH . 
H 6 HOH B 55 304 101 HOH HOH . 
H 6 HOH B 56 305 102 HOH HOH . 
H 6 HOH B 57 306 103 HOH HOH . 
H 6 HOH B 58 307 105 HOH HOH . 
H 6 HOH B 59 308 108 HOH HOH . 
H 6 HOH B 60 309 109 HOH HOH . 
H 6 HOH B 61 310 110 HOH HOH . 
H 6 HOH B 62 311 111 HOH HOH . 
H 6 HOH B 63 312 113 HOH HOH . 
H 6 HOH B 64 313 115 HOH HOH . 
H 6 HOH B 65 314 116 HOH HOH . 
H 6 HOH B 66 315 118 HOH HOH . 
H 6 HOH B 67 316 119 HOH HOH . 
H 6 HOH B 68 317 125 HOH HOH . 
H 6 HOH B 69 318 126 HOH HOH . 
H 6 HOH B 70 319 127 HOH HOH . 
H 6 HOH B 71 320 128 HOH HOH . 
H 6 HOH B 72 321 132 HOH HOH . 
H 6 HOH B 73 322 133 HOH HOH . 
H 6 HOH B 74 323 134 HOH HOH . 
H 6 HOH B 75 324 136 HOH HOH . 
H 6 HOH B 76 325 139 HOH HOH . 
H 6 HOH B 77 326 140 HOH HOH . 
H 6 HOH B 78 327 142 HOH HOH . 
H 6 HOH B 79 328 145 HOH HOH . 
H 6 HOH B 80 329 147 HOH HOH . 
H 6 HOH B 81 330 148 HOH HOH . 
H 6 HOH B 82 331 153 HOH HOH . 
H 6 HOH B 83 332 154 HOH HOH . 
H 6 HOH B 84 333 158 HOH HOH . 
H 6 HOH B 85 334 159 HOH HOH . 
H 6 HOH B 86 335 161 HOH HOH . 
H 6 HOH B 87 336 163 HOH HOH . 
H 6 HOH B 88 337 165 HOH HOH . 
H 6 HOH B 89 338 169 HOH HOH . 
H 6 HOH B 90 339 176 HOH HOH . 
H 6 HOH B 91 340 177 HOH HOH . 
H 6 HOH B 92 341 178 HOH HOH . 
H 6 HOH B 93 342 179 HOH HOH . 
H 6 HOH B 94 343 181 HOH HOH . 
H 6 HOH B 95 344 188 HOH HOH . 
H 6 HOH B 96 345 189 HOH HOH . 
H 6 HOH B 97 346 195 HOH HOH . 
H 6 HOH B 98 347 192 HOH HOH . 
H 6 HOH B 99 348 198 HOH HOH . 
H 6 HOH B 100 349 199 HOH HOH . 
H 6 HOH B 101 350 200 HOH HOH . 
H 6 HOH B 102 351 201 HOH HOH . 
H 6 HOH B 103 352 202 HOH HOH . 
H 6 HOH B 104 353 203 HOH HOH . 
H 6 HOH B 105 354 204 HOH HOH . 
H 6 HOH B 106 355 205 HOH HOH . 
H 6 HOH B 107 356 206 HOH HOH . 
H 6 HOH B 108 357 207 HOH HOH . 
H 6 HOH B 109 358 208 HOH HOH . 
H 6 HOH B 110 359 209 HOH HOH . 
H 6 HOH B 111 360 210 HOH HOH . 
H 6 HOH B 112 361 211 HOH HOH . 
H 6 HOH B 113 362 212 HOH HOH . 
H 6 HOH B 114 363 219 HOH HOH . 
H 6 HOH B 115 364 220 HOH HOH . 
H 6 HOH B 116 365 221 HOH HOH . 
H 6 HOH B 117 366 222 HOH HOH . 
H 6 HOH B 118 367 190 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEG . . . D 4 3.903 -31.607 18.18 1 32.34 ? C1 PEG 1002 A 1 
HETATM 2 O O1 PEG . . . D 4 5.142 -31.473 17.48 1 33.03 ? O1 PEG 1002 A 1 
HETATM 3 C C2 PEG . . . D 4 4.174 -32.063 19.605 1 34.09 ? C2 PEG 1002 A 1 
HETATM 4 O O2 PEG . . . D 4 3.02 -32.749 20.12 1 35.1 ? O2 PEG 1002 A 1 
HETATM 5 C C3 PEG . . . D 4 3.234 -34.145 20.361 1 34.7 ? C3 PEG 1002 A 1 
HETATM 6 C C4 PEG . . . D 4 2.744 -35.032 19.218 1 35.65 ? C4 PEG 1002 A 1 
HETATM 7 O O4 PEG . . . D 4 2.642 -36.41 19.627 1 35.43 ? O4 PEG 1002 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           7 
#