data_3FE2 # _model_server_result.job_id HEU_1TmrpkLTSmNEfJ3yeg _model_server_result.datetime_utc '2025-03-04 12:05:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fe2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":308}' # _entry.id 3FE2 # _exptl.entry_id 3FE2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FE2 _cell.length_a 84.57 _cell.length_b 106.87 _cell.length_c 117.32 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FE2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,I 1 1 B,E,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3FE2 _atom_sites.fract_transf_matrix[1][1] 0.011825 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 3 3 SO4 SO4 . D 3 ADP A 1 308 300 ADP ADP . E 4 CL B 1 1 1 CL CL . F 2 SO4 B 1 2 2 SO4 SO4 . G 2 SO4 B 1 4 4 SO4 SO4 . H 3 ADP B 1 308 300 ADP ADP . I 5 HOH A 1 2 2 HOH HOH . I 5 HOH A 2 5 5 HOH HOH . I 5 HOH A 3 6 6 HOH HOH . I 5 HOH A 4 7 7 HOH HOH . I 5 HOH A 5 10 10 HOH HOH . I 5 HOH A 6 13 13 HOH HOH . I 5 HOH A 7 15 15 HOH HOH . I 5 HOH A 8 16 16 HOH HOH . I 5 HOH A 9 17 17 HOH HOH . I 5 HOH A 10 21 21 HOH HOH . I 5 HOH A 11 25 25 HOH HOH . I 5 HOH A 12 29 29 HOH HOH . I 5 HOH A 13 33 33 HOH HOH . I 5 HOH A 14 34 34 HOH HOH . I 5 HOH A 15 38 38 HOH HOH . I 5 HOH A 16 39 39 HOH HOH . I 5 HOH A 17 41 41 HOH HOH . I 5 HOH A 18 44 44 HOH HOH . I 5 HOH A 19 45 45 HOH HOH . I 5 HOH A 20 48 48 HOH HOH . I 5 HOH A 21 49 49 HOH HOH . I 5 HOH A 22 50 50 HOH HOH . I 5 HOH A 23 52 52 HOH HOH . I 5 HOH A 24 53 53 HOH HOH . I 5 HOH A 25 54 54 HOH HOH . I 5 HOH A 26 55 55 HOH HOH . I 5 HOH A 27 56 56 HOH HOH . I 5 HOH A 28 62 62 HOH HOH . I 5 HOH A 29 63 63 HOH HOH . I 5 HOH A 30 65 65 HOH HOH . I 5 HOH A 31 309 74 HOH HOH . I 5 HOH A 32 310 75 HOH HOH . J 5 HOH B 1 3 3 HOH HOH . J 5 HOH B 2 8 8 HOH HOH . J 5 HOH B 3 9 9 HOH HOH . J 5 HOH B 4 11 11 HOH HOH . J 5 HOH B 5 12 12 HOH HOH . J 5 HOH B 6 14 14 HOH HOH . J 5 HOH B 7 18 18 HOH HOH . J 5 HOH B 8 19 19 HOH HOH . J 5 HOH B 9 20 20 HOH HOH . J 5 HOH B 10 22 22 HOH HOH . J 5 HOH B 11 23 23 HOH HOH . J 5 HOH B 12 24 24 HOH HOH . J 5 HOH B 13 26 26 HOH HOH . J 5 HOH B 14 27 27 HOH HOH . J 5 HOH B 15 28 28 HOH HOH . J 5 HOH B 16 30 30 HOH HOH . J 5 HOH B 17 31 31 HOH HOH . J 5 HOH B 18 32 32 HOH HOH . J 5 HOH B 19 35 35 HOH HOH . J 5 HOH B 20 36 36 HOH HOH . J 5 HOH B 21 37 37 HOH HOH . J 5 HOH B 22 40 40 HOH HOH . J 5 HOH B 23 42 42 HOH HOH . J 5 HOH B 24 43 43 HOH HOH . J 5 HOH B 25 46 46 HOH HOH . J 5 HOH B 26 47 47 HOH HOH . J 5 HOH B 27 51 51 HOH HOH . J 5 HOH B 28 57 57 HOH HOH . J 5 HOH B 29 58 58 HOH HOH . J 5 HOH B 30 59 59 HOH HOH . J 5 HOH B 31 60 60 HOH HOH . J 5 HOH B 32 61 61 HOH HOH . J 5 HOH B 33 64 64 HOH HOH . J 5 HOH B 34 309 1 HOH HOH . J 5 HOH B 35 310 4 HOH HOH . J 5 HOH B 36 311 66 HOH HOH . J 5 HOH B 37 312 67 HOH HOH . J 5 HOH B 38 313 68 HOH HOH . J 5 HOH B 39 314 69 HOH HOH . J 5 HOH B 40 315 70 HOH HOH . J 5 HOH B 41 316 71 HOH HOH . J 5 HOH B 42 317 72 HOH HOH . J 5 HOH B 43 318 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . H 3 36.318 52.248 -19.053 1 37.59 ? PB ADP 308 B 1 HETATM 2 O O1B ADP . . . H 3 35.233 51.474 -19.777 1 37.29 ? O1B ADP 308 B 1 HETATM 3 O O2B ADP . . . H 3 36.09 53.746 -18.974 1 38.06 ? O2B ADP 308 B 1 HETATM 4 O O3B ADP . . . H 3 37.728 51.869 -19.46 1 37.2 ? O3B ADP 308 B 1 HETATM 5 P PA ADP . . . H 3 35.757 50.408 -17.061 1 31.72 ? PA ADP 308 B 1 HETATM 6 O O1A ADP . . . H 3 34.255 50.385 -16.936 1 33.64 ? O1A ADP 308 B 1 HETATM 7 O O2A ADP . . . H 3 36.426 49.405 -17.96 1 35.25 ? O2A ADP 308 B 1 HETATM 8 O O3A ADP . . . H 3 36.212 51.855 -17.51 1 32.9 ? O3A ADP 308 B 1 HETATM 9 O O5' ADP . . . H 3 36.394 50.254 -15.593 1 31.65 ? O5' ADP 308 B 1 HETATM 10 C C5' ADP . . . H 3 37.745 50.618 -15.332 1 31.52 ? C5' ADP 308 B 1 HETATM 11 C C4' ADP . . . H 3 38.119 50.276 -13.901 1 31.26 ? C4' ADP 308 B 1 HETATM 12 O O4' ADP . . . H 3 37.541 51.234 -13.006 1 32.55 ? O4' ADP 308 B 1 HETATM 13 C C3' ADP . . . H 3 37.619 48.904 -13.471 1 30.82 ? C3' ADP 308 B 1 HETATM 14 O O3' ADP . . . H 3 38.741 48.141 -13.021 1 29.29 ? O3' ADP 308 B 1 HETATM 15 C C2' ADP . . . H 3 36.601 49.17 -12.375 1 30.63 ? C2' ADP 308 B 1 HETATM 16 O O2' ADP . . . H 3 36.717 48.232 -11.302 1 32.96 ? O2' ADP 308 B 1 HETATM 17 C C1' ADP . . . H 3 36.932 50.578 -11.874 1 31.43 ? C1' ADP 308 B 1 HETATM 18 N N9 ADP . . . H 3 35.773 51.367 -11.319 1 28.21 ? N9 ADP 308 B 1 HETATM 19 C C8 ADP . . . H 3 34.529 51.445 -11.82 1 27.3 ? C8 ADP 308 B 1 HETATM 20 N N7 ADP . . . H 3 33.736 52.249 -11.066 1 26.06 ? N7 ADP 308 B 1 HETATM 21 C C5 ADP . . . H 3 34.477 52.697 -10.055 1 25.56 ? C5 ADP 308 B 1 HETATM 22 C C6 ADP . . . H 3 34.268 53.589 -8.901 1 23.54 ? C6 ADP 308 B 1 HETATM 23 N N6 ADP . . . H 3 33.077 54.157 -8.69 1 22.36 ? N6 ADP 308 B 1 HETATM 24 N N1 ADP . . . H 3 35.302 53.809 -8.07 1 24.19 ? N1 ADP 308 B 1 HETATM 25 C C2 ADP . . . H 3 36.512 53.252 -8.267 1 24.09 ? C2 ADP 308 B 1 HETATM 26 N N3 ADP . . . H 3 36.769 52.434 -9.303 1 26.23 ? N3 ADP 308 B 1 HETATM 27 C C4 ADP . . . H 3 35.816 52.119 -10.221 1 26.54 ? C4 ADP 308 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #