data_3FEA
#
_model_server_result.job_id            bDltIOxfRliv0O6IXwVjKQ 
_model_server_result.datetime_utc      '2024-11-04 20:16:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fea 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1}' 
#
_entry.id    3FEA 
#
_exptl.entry_id    3FEA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3FEA 
_cell.length_a            42.249 
_cell.length_b            42.249 
_cell.length_c            70.449 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FEA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,D,E,F 1 1 
C,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 L ACE 1 1_555 B N PHE 2 L PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale2 B C MET 3 L MET 3 1_555 B N AIB 4 L AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale3 B C AIB 4 L AIB 4 1_555 B N PM3 5 L PM3 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale4 B C PM3 5 L PM3 5 1_555 B N 6CW 6 L 6CW 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale5 B C 6CW 6 L 6CW 6 1_555 B N GLU 7 L GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale6 B C GLU 7 L GLU 7 1_555 B N 1AC 8 L 1AC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale7 B C 1AC 8 L 1AC 8 1_555 B N LEU 9 L LEU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale8 B C LEU 9 L LEU 9 1_555 B N NH2 10 L NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale9 C C ACE 1 M ACE 1 1_555 C N PHE 2 M PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
covale ? covale10 C C MET 3 M MET 3 1_555 C N AIB 4 M AIB 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? 
covale ? covale11 C C AIB 4 M AIB 4 1_555 C N PM3 5 M PM3 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? 
covale ? covale12 C C PM3 5 M PM3 5 1_555 C N 6CW 6 M 6CW 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 ? 
covale ? covale13 C C 6CW 6 M 6CW 6 1_555 C N GLU 7 M GLU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale14 C C GLU 7 M GLU 7 1_555 C N 1AC 8 M 1AC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? 
covale ? covale15 C C 1AC 8 M 1AC 8 1_555 C N LEU 9 M LEU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale16 C C LEU 9 M LEU 9 1_555 C N NH2 10 M NH2 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 300 n n 
C1 H11 MPD sing 301 n n 
C1 H12 MPD sing 302 n n 
C1 H13 MPD sing 303 n n 
C2 O2 MPD sing 304 n n 
C2 CM MPD sing 305 n n 
C2 C3 MPD sing 306 n n 
O2 HO2 MPD sing 307 n n 
CM HM1 MPD sing 308 n n 
CM HM2 MPD sing 309 n n 
CM HM3 MPD sing 310 n n 
C3 C4 MPD sing 311 n n 
C3 H31 MPD sing 312 n n 
C3 H32 MPD sing 313 n n 
C4 O4 MPD sing 314 n n 
C4 C5 MPD sing 315 n n 
C4 H4 MPD sing 316 n n 
O4 HO4 MPD sing 317 n n 
C5 H51 MPD sing 318 n n 
C5 H52 MPD sing 319 n n 
C5 H53 MPD sing 320 n n 
#
_atom_sites.entry_id                     3FEA 
_atom_sites.fract_transf_matrix[1][1]    0.023669 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023669 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014195 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 MPD A 1 1 1 MPD MPD . 
E 4 HOH A 1 2 2 HOH HOH . 
E 4 HOH A 2 4 4 HOH HOH . 
E 4 HOH A 3 5 5 HOH HOH . 
E 4 HOH A 4 6 6 HOH HOH . 
E 4 HOH A 5 7 7 HOH HOH . 
E 4 HOH A 6 8 8 HOH HOH . 
E 4 HOH A 7 9 9 HOH HOH . 
E 4 HOH A 8 10 10 HOH HOH . 
E 4 HOH A 9 11 11 HOH HOH . 
E 4 HOH A 10 112 1 HOH HOH . 
E 4 HOH A 11 113 12 HOH HOH . 
E 4 HOH A 12 114 14 HOH HOH . 
E 4 HOH A 13 115 15 HOH HOH . 
E 4 HOH A 14 116 19 HOH HOH . 
E 4 HOH A 15 117 20 HOH HOH . 
E 4 HOH A 16 118 21 HOH HOH . 
E 4 HOH A 17 119 22 HOH HOH . 
E 4 HOH A 18 120 23 HOH HOH . 
E 4 HOH A 19 121 24 HOH HOH . 
E 4 HOH A 20 122 25 HOH HOH . 
E 4 HOH A 21 123 27 HOH HOH . 
E 4 HOH A 22 124 28 HOH HOH . 
E 4 HOH A 23 125 30 HOH HOH . 
E 4 HOH A 24 126 31 HOH HOH . 
E 4 HOH A 25 127 32 HOH HOH . 
E 4 HOH A 26 128 34 HOH HOH . 
E 4 HOH A 27 129 35 HOH HOH . 
E 4 HOH A 28 130 38 HOH HOH . 
E 4 HOH A 29 131 39 HOH HOH . 
E 4 HOH A 30 132 40 HOH HOH . 
E 4 HOH A 31 133 41 HOH HOH . 
E 4 HOH A 32 134 43 HOH HOH . 
E 4 HOH A 33 135 44 HOH HOH . 
E 4 HOH A 34 136 45 HOH HOH . 
E 4 HOH A 35 137 46 HOH HOH . 
E 4 HOH A 36 138 47 HOH HOH . 
E 4 HOH A 37 139 49 HOH HOH . 
E 4 HOH A 38 140 50 HOH HOH . 
E 4 HOH A 39 141 51 HOH HOH . 
E 4 HOH A 40 142 53 HOH HOH . 
E 4 HOH A 41 143 54 HOH HOH . 
E 4 HOH A 42 144 55 HOH HOH . 
E 4 HOH A 43 145 57 HOH HOH . 
E 4 HOH A 44 146 58 HOH HOH . 
E 4 HOH A 45 147 59 HOH HOH . 
E 4 HOH A 46 148 60 HOH HOH . 
E 4 HOH A 47 149 61 HOH HOH . 
E 4 HOH A 48 150 63 HOH HOH . 
E 4 HOH A 49 151 65 HOH HOH . 
E 4 HOH A 50 152 66 HOH HOH . 
E 4 HOH A 51 153 67 HOH HOH . 
E 4 HOH A 52 154 69 HOH HOH . 
E 4 HOH A 53 155 70 HOH HOH . 
E 4 HOH A 54 156 76 HOH HOH . 
E 4 HOH A 55 157 73 HOH HOH . 
E 4 HOH A 56 158 78 HOH HOH . 
E 4 HOH A 57 159 79 HOH HOH . 
E 4 HOH A 58 160 80 HOH HOH . 
E 4 HOH A 59 161 82 HOH HOH . 
F 4 HOH L 1 11 3 HOH HOH . 
F 4 HOH L 2 13 13 HOH HOH . 
F 4 HOH L 3 16 16 HOH HOH . 
F 4 HOH L 4 17 17 HOH HOH . 
F 4 HOH L 5 18 18 HOH HOH . 
F 4 HOH L 6 26 26 HOH HOH . 
F 4 HOH L 7 29 29 HOH HOH . 
F 4 HOH L 8 33 33 HOH HOH . 
F 4 HOH L 9 36 36 HOH HOH . 
F 4 HOH L 10 37 37 HOH HOH . 
F 4 HOH L 11 48 48 HOH HOH . 
F 4 HOH L 12 56 56 HOH HOH . 
F 4 HOH L 13 62 62 HOH HOH . 
F 4 HOH L 14 64 64 HOH HOH . 
F 4 HOH L 15 71 71 HOH HOH . 
F 4 HOH L 16 74 74 HOH HOH . 
F 4 HOH L 17 75 75 HOH HOH . 
F 4 HOH L 18 77 77 HOH HOH . 
F 4 HOH L 19 156 72 HOH HOH . 
G 4 HOH M 1 42 42 HOH HOH . 
G 4 HOH M 2 52 52 HOH HOH . 
G 4 HOH M 3 68 68 HOH HOH . 
G 4 HOH M 4 81 81 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 3 24.312 12.604 4.62 1 32.21 ? C1 MPD 1 A 1 
HETATM 2 C C2 MPD . . . D 3 24.022 11.288 5.334 1 31.39 ? C2 MPD 1 A 1 
HETATM 3 O O2 MPD . . . D 3 24.323 11.45 6.741 1 34.03 ? O2 MPD 1 A 1 
HETATM 4 C CM MPD . . . D 3 22.537 10.938 5.251 1 31.03 ? CM MPD 1 A 1 
HETATM 5 C C3 MPD . . . D 3 24.844 10.178 4.682 1 32.63 ? C3 MPD 1 A 1 
HETATM 6 C C4 MPD . . . D 3 26.149 9.759 5.362 1 35.23 ? C4 MPD 1 A 1 
HETATM 7 O O4 MPD . . . D 3 26.679 10.784 6.168 1 33.13 ? O4 MPD 1 A 1 
HETATM 8 C C5 MPD . . . D 3 27.152 9.363 4.286 1 35.44 ? C5 MPD 1 A 1 
#
_model_server_stats.io_time_ms              38 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           8 
#