data_3FEP # _model_server_result.job_id ZqMckGi2oVq8hOkqrH0WaQ _model_server_result.datetime_utc '2024-11-26 00:14:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fep # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":139}' # _entry.id 3FEP # _exptl.entry_id 3FEP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.365 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E,4E,6E)-3-methyl-6-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)hexa-2,4-dienal _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FEP _cell.length_a 55.808 _cell.length_b 55.808 _cell.length_c 108.177 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FEP _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 132 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 132 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C18 _struct_conn.ptnr2_label_comp_id LMC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id LMC _struct_conn.ptnr2_auth_seq_id 139 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.257 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C18 H21 N O' _chem_comp.formula_weight 267.365 _chem_comp.id LMC _chem_comp.mon_nstd_flag . _chem_comp.name (2E,4E,6E)-3-methyl-6-(1,3,3-trimethyl-1,3-dihydro-2H-indol-2-ylidene)hexa-2,4-dienal _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2E,4E,6Z)-3-methyl-6-(1,3,3-trimethylindolin-2-ylidene)hexa-2,4-dienal # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 LMC sing 173 n n C18 O1 LMC doub 174 n n C18 H18 LMC sing 175 n n C17 H17 LMC sing 176 n n C16 C17 LMC doub 177 e n C16 C15 LMC sing 178 n n C20 C16 LMC sing 179 n n C20 H20 LMC sing 180 n n C20 H20A LMC sing 181 n n C15 H15 LMC sing 182 n n C14 C15 LMC doub 183 n n C14 C13 LMC sing 184 e n C14 H14 LMC sing 185 n n C13 H13 LMC sing 186 n n C8 C13 LMC doub 187 n n C8 N9 LMC sing 188 e n C7 C8 LMC sing 189 n n C7 C2 LMC sing 190 n n C11 C7 LMC sing 191 n n C11 H11 LMC sing 192 n n C11 H11A LMC sing 193 n n C11 H11B LMC sing 194 n n C10 C7 LMC sing 195 n n C10 H10 LMC sing 196 n n C10 H10A LMC sing 197 n n C10 H10B LMC sing 198 n n C2 C3 LMC sing 199 n y C3 C4 LMC doub 200 n y C3 N9 LMC sing 201 n n N9 C12 LMC sing 202 n n C12 H12 LMC sing 203 n n C12 H12A LMC sing 204 n n C12 H12B LMC sing 205 n n C1 C2 LMC doub 206 n y C1 C6 LMC sing 207 n y C1 H1 LMC sing 208 n n C6 C5 LMC doub 209 n y C6 H6 LMC sing 210 n n C5 C4 LMC sing 211 n y C5 H5 LMC sing 212 n n C4 H4 LMC sing 213 n n C20 H21 LMC sing 214 n n # _atom_sites.entry_id 3FEP _atom_sites.fract_transf_matrix[1][1] 0.017919 _atom_sites.fract_transf_matrix[1][2] 0.010345 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LMC A 1 139 139 LMC LMC . C 3 MES A 1 138 138 MES MES . D 4 HOH A 1 140 2 HOH HOH . D 4 HOH A 2 141 3 HOH HOH . D 4 HOH A 3 142 5 HOH HOH . D 4 HOH A 4 143 6 HOH HOH . D 4 HOH A 5 144 15 HOH HOH . D 4 HOH A 6 145 18 HOH HOH . D 4 HOH A 7 146 20 HOH HOH . D 4 HOH A 8 147 21 HOH HOH . D 4 HOH A 9 148 22 HOH HOH . D 4 HOH A 10 149 23 HOH HOH . D 4 HOH A 11 150 24 HOH HOH . D 4 HOH A 12 151 25 HOH HOH . D 4 HOH A 13 152 27 HOH HOH . D 4 HOH A 14 153 31 HOH HOH . D 4 HOH A 15 154 37 HOH HOH . D 4 HOH A 16 155 38 HOH HOH . D 4 HOH A 17 156 39 HOH HOH . D 4 HOH A 18 157 40 HOH HOH . D 4 HOH A 19 158 46 HOH HOH . D 4 HOH A 20 159 48 HOH HOH . D 4 HOH A 21 160 50 HOH HOH . D 4 HOH A 22 161 55 HOH HOH . D 4 HOH A 23 162 56 HOH HOH . D 4 HOH A 24 163 57 HOH HOH . D 4 HOH A 25 164 59 HOH HOH . D 4 HOH A 26 165 60 HOH HOH . D 4 HOH A 27 166 62 HOH HOH . D 4 HOH A 28 167 63 HOH HOH . D 4 HOH A 29 168 65 HOH HOH . D 4 HOH A 30 169 66 HOH HOH . D 4 HOH A 31 170 67 HOH HOH . D 4 HOH A 32 171 70 HOH HOH . D 4 HOH A 33 172 71 HOH HOH . D 4 HOH A 34 173 73 HOH HOH . D 4 HOH A 35 174 74 HOH HOH . D 4 HOH A 36 175 76 HOH HOH . D 4 HOH A 37 176 78 HOH HOH . D 4 HOH A 38 177 79 HOH HOH . D 4 HOH A 39 178 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 LMC . . . B 2 32.694 -17.221 6.489 1 49.79 ? C18 LMC 139 A 1 HETATM 2 C C17 LMC . . . B 2 33.91 -17.471 6.95 1 49.9 ? C17 LMC 139 A 1 HETATM 3 C C16 LMC . . . B 2 34.792 -18.203 6.261 1 50.08 ? C16 LMC 139 A 1 HETATM 4 C C20 LMC . . . B 2 34.448 -18.787 4.929 1 49.78 ? C20 LMC 139 A 1 HETATM 5 C C15 LMC . . . B 2 35.995 -18.405 6.795 1 50.37 ? C15 LMC 139 A 1 HETATM 6 C C14 LMC . . . B 2 37.07 -18.692 6.073 1 50.69 ? C14 LMC 139 A 1 HETATM 7 C C13 LMC . . . B 2 38.186 -18.857 6.767 1 50.76 ? C13 LMC 139 A 1 HETATM 8 C C8 LMC . . . B 2 39.321 -19.697 6.332 1 50.71 ? C8 LMC 139 A 1 HETATM 9 C C7 LMC . . . B 2 39.377 -20.444 5.054 1 50.63 ? C7 LMC 139 A 1 HETATM 10 C C11 LMC . . . B 2 38.314 -21.52 4.943 1 50.45 ? C11 LMC 139 A 1 HETATM 11 C C10 LMC . . . B 2 39.397 -19.495 3.873 1 50.57 ? C10 LMC 139 A 1 HETATM 12 C C2 LMC . . . B 2 40.723 -21.012 5.284 1 50.78 ? C2 LMC 139 A 1 HETATM 13 C C3 LMC . . . B 2 41.284 -20.608 6.482 1 50.79 ? C3 LMC 139 A 1 HETATM 14 N N9 LMC . . . B 2 40.406 -19.807 7.097 1 50.76 ? N9 LMC 139 A 1 HETATM 15 C C12 LMC . . . B 2 40.61 -19.157 8.409 1 50.81 ? C12 LMC 139 A 1 HETATM 16 C C1 LMC . . . B 2 41.426 -21.855 4.443 1 50.87 ? C1 LMC 139 A 1 HETATM 17 C C6 LMC . . . B 2 42.69 -22.292 4.808 1 50.82 ? C6 LMC 139 A 1 HETATM 18 C C5 LMC . . . B 2 43.249 -21.888 6.008 1 50.72 ? C5 LMC 139 A 1 HETATM 19 C C4 LMC . . . B 2 42.545 -21.043 6.846 1 50.73 ? C4 LMC 139 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #