data_3FER # _model_server_result.job_id xHEJ8qJruaWuL-FF5diI7A _model_server_result.datetime_utc '2024-10-25 20:19:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fer # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":263}' # _entry.id 3FER # _exptl.entry_id 3FER _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.14 _cell.angle_gamma 90 _cell.entry_id 3FER _cell.length_a 116.847 _cell.length_b 82.41 _cell.length_c 132.251 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FER _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,G 1 1 B,E,H 2 1 C,F,I 3 1 D,J 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 71 A ARG 71 1_555 A N MSE 72 A MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 72 A MSE 72 1_555 A N TYR 73 A TYR 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C GLN 84 A GLN 84 1_555 A N MSE 85 A MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 85 A MSE 85 1_555 A N GLN 86 A GLN 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C SER 134 A SER 134 1_555 A N MSE 135 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 A C MSE 135 A MSE 135 1_555 A N PRO 136 A PRO 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale7 A C ALA 211 A ALA 211 1_555 A N MSE 212 A MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale8 A C MSE 212 A MSE 212 1_555 A N GLN 213 A GLN 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C VAL 240 A VAL 240 1_555 A N MSE 241 A MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale10 A C MSE 241 A MSE 241 1_555 A N THR 242 A THR 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 B C ARG 71 B ARG 71 1_555 B N MSE 72 B MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 B C MSE 72 B MSE 72 1_555 B N TYR 73 B TYR 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 B C GLN 84 B GLN 84 1_555 B N MSE 85 B MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 B C MSE 85 B MSE 85 1_555 B N GLN 86 B GLN 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale15 B C SER 134 B SER 134 1_555 B N MSE 135 B MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 B C MSE 135 B MSE 135 1_555 B N PRO 136 B PRO 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale17 B C ALA 211 B ALA 211 1_555 B N MSE 212 B MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 B C MSE 212 B MSE 212 1_555 B N GLN 213 B GLN 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale19 B C VAL 240 B VAL 240 1_555 B N MSE 241 B MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale20 B C MSE 241 B MSE 241 1_555 B N THR 242 B THR 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale21 C C ARG 71 C ARG 71 1_555 C N MSE 72 C MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 C C MSE 72 C MSE 72 1_555 C N TYR 73 C TYR 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale23 C C GLN 84 C GLN 84 1_555 C N MSE 85 C MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 C C MSE 85 C MSE 85 1_555 C N GLN 86 C GLN 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale25 C C ALA 211 C ALA 211 1_555 C N MSE 212 C MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale26 C C MSE 212 C MSE 212 1_555 C N GLN 213 C GLN 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale27 C C VAL 240 C VAL 240 1_555 C N MSE 241 C MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale28 C C MSE 241 C MSE 241 1_555 C N THR 242 C THR 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale29 D C ARG 71 D ARG 71 1_555 D N MSE 72 D MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale30 D C MSE 72 D MSE 72 1_555 D N TYR 73 D TYR 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale31 D C GLN 84 D GLN 84 1_555 D N MSE 85 D MSE 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale32 D C MSE 85 D MSE 85 1_555 D N GLN 86 D GLN 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale33 D C SER 134 D SER 134 1_555 D N MSE 135 D MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale34 D C MSE 135 D MSE 135 1_555 D N PRO 136 D PRO 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale35 D C ALA 211 D ALA 211 1_555 D N MSE 212 D MSE 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale36 D C MSE 212 D MSE 212 1_555 D N GLN 213 D GLN 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale37 D C VAL 240 D VAL 240 1_555 D N MSE 241 D MSE 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale38 D C MSE 241 D MSE 241 1_555 D N THR 242 D THR 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 3FER _atom_sites.fract_transf_matrix[1][1] 0.008558 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000619 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012134 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ACY B 1 263 2 ACY ACY . F 2 ACY C 1 263 1 ACY ACY . G 3 HOH A 1 263 5 HOH TIP . G 3 HOH A 2 264 9 HOH TIP . G 3 HOH A 3 265 10 HOH TIP . G 3 HOH A 4 266 11 HOH TIP . G 3 HOH A 5 267 13 HOH TIP . G 3 HOH A 6 268 15 HOH TIP . G 3 HOH A 7 269 18 HOH TIP . G 3 HOH A 8 270 20 HOH TIP . G 3 HOH A 9 271 21 HOH TIP . G 3 HOH A 10 272 22 HOH TIP . G 3 HOH A 11 273 23 HOH TIP . G 3 HOH A 12 274 25 HOH TIP . G 3 HOH A 13 275 29 HOH TIP . G 3 HOH A 14 276 40 HOH TIP . G 3 HOH A 15 277 43 HOH TIP . G 3 HOH A 16 278 44 HOH TIP . G 3 HOH A 17 279 46 HOH TIP . G 3 HOH A 18 280 49 HOH TIP . G 3 HOH A 19 281 50 HOH TIP . G 3 HOH A 20 282 51 HOH TIP . G 3 HOH A 21 283 55 HOH TIP . G 3 HOH A 22 284 56 HOH TIP . G 3 HOH A 23 285 58 HOH TIP . G 3 HOH A 24 286 59 HOH TIP . G 3 HOH A 25 287 60 HOH TIP . G 3 HOH A 26 288 63 HOH TIP . G 3 HOH A 27 289 67 HOH TIP . G 3 HOH A 28 290 77 HOH TIP . G 3 HOH A 29 291 80 HOH TIP . G 3 HOH A 30 292 82 HOH TIP . G 3 HOH A 31 293 87 HOH TIP . G 3 HOH A 32 294 88 HOH TIP . G 3 HOH A 33 295 89 HOH TIP . G 3 HOH A 34 296 90 HOH TIP . G 3 HOH A 35 297 91 HOH TIP . G 3 HOH A 36 298 95 HOH TIP . G 3 HOH A 37 299 98 HOH TIP . G 3 HOH A 38 300 100 HOH TIP . G 3 HOH A 39 301 102 HOH TIP . G 3 HOH A 40 302 103 HOH TIP . G 3 HOH A 41 303 106 HOH TIP . G 3 HOH A 42 304 109 HOH TIP . G 3 HOH A 43 305 113 HOH TIP . G 3 HOH A 44 306 114 HOH TIP . G 3 HOH A 45 307 115 HOH TIP . G 3 HOH A 46 308 120 HOH TIP . G 3 HOH A 47 309 125 HOH TIP . G 3 HOH A 48 310 127 HOH TIP . G 3 HOH A 49 311 129 HOH TIP . G 3 HOH A 50 312 141 HOH TIP . G 3 HOH A 51 313 143 HOH TIP . G 3 HOH A 52 314 148 HOH TIP . G 3 HOH A 53 315 150 HOH TIP . G 3 HOH A 54 316 151 HOH TIP . H 3 HOH B 1 264 1 HOH TIP . H 3 HOH B 2 265 2 HOH TIP . H 3 HOH B 3 266 4 HOH TIP . H 3 HOH B 4 267 6 HOH TIP . H 3 HOH B 5 268 8 HOH TIP . H 3 HOH B 6 269 14 HOH TIP . H 3 HOH B 7 270 16 HOH TIP . H 3 HOH B 8 271 17 HOH TIP . H 3 HOH B 9 272 19 HOH TIP . H 3 HOH B 10 273 28 HOH TIP . H 3 HOH B 11 274 32 HOH TIP . H 3 HOH B 12 275 33 HOH TIP . H 3 HOH B 13 276 34 HOH TIP . H 3 HOH B 14 277 35 HOH TIP . H 3 HOH B 15 278 37 HOH TIP . H 3 HOH B 16 279 38 HOH TIP . H 3 HOH B 17 280 41 HOH TIP . H 3 HOH B 18 281 42 HOH TIP . H 3 HOH B 19 282 47 HOH TIP . H 3 HOH B 20 283 52 HOH TIP . H 3 HOH B 21 284 53 HOH TIP . H 3 HOH B 22 285 57 HOH TIP . H 3 HOH B 23 286 61 HOH TIP . H 3 HOH B 24 287 68 HOH TIP . H 3 HOH B 25 288 69 HOH TIP . H 3 HOH B 26 289 71 HOH TIP . H 3 HOH B 27 290 73 HOH TIP . H 3 HOH B 28 291 75 HOH TIP . H 3 HOH B 29 292 76 HOH TIP . H 3 HOH B 30 293 84 HOH TIP . H 3 HOH B 31 294 85 HOH TIP . H 3 HOH B 32 295 93 HOH TIP . H 3 HOH B 33 296 96 HOH TIP . H 3 HOH B 34 297 97 HOH TIP . H 3 HOH B 35 298 101 HOH TIP . H 3 HOH B 36 299 104 HOH TIP . H 3 HOH B 37 300 107 HOH TIP . H 3 HOH B 38 301 112 HOH TIP . H 3 HOH B 39 302 117 HOH TIP . H 3 HOH B 40 303 119 HOH TIP . H 3 HOH B 41 304 126 HOH TIP . H 3 HOH B 42 305 135 HOH TIP . H 3 HOH B 43 306 136 HOH TIP . H 3 HOH B 44 307 137 HOH TIP . H 3 HOH B 45 308 140 HOH TIP . H 3 HOH B 46 309 145 HOH TIP . H 3 HOH B 47 310 149 HOH TIP . I 3 HOH C 1 264 3 HOH TIP . I 3 HOH C 2 265 24 HOH TIP . I 3 HOH C 3 266 27 HOH TIP . I 3 HOH C 4 267 31 HOH TIP . I 3 HOH C 5 268 36 HOH TIP . I 3 HOH C 6 269 45 HOH TIP . I 3 HOH C 7 270 48 HOH TIP . I 3 HOH C 8 271 65 HOH TIP . I 3 HOH C 9 272 79 HOH TIP . I 3 HOH C 10 273 83 HOH TIP . I 3 HOH C 11 274 94 HOH TIP . I 3 HOH C 12 275 105 HOH TIP . I 3 HOH C 13 276 108 HOH TIP . I 3 HOH C 14 277 110 HOH TIP . I 3 HOH C 15 278 111 HOH TIP . I 3 HOH C 16 279 116 HOH TIP . I 3 HOH C 17 280 121 HOH TIP . I 3 HOH C 18 281 123 HOH TIP . I 3 HOH C 19 282 124 HOH TIP . I 3 HOH C 20 283 142 HOH TIP . I 3 HOH C 21 284 146 HOH TIP . I 3 HOH C 22 285 153 HOH TIP . J 3 HOH D 1 263 7 HOH TIP . J 3 HOH D 2 264 12 HOH TIP . J 3 HOH D 3 265 26 HOH TIP . J 3 HOH D 4 266 30 HOH TIP . J 3 HOH D 5 267 39 HOH TIP . J 3 HOH D 6 268 54 HOH TIP . J 3 HOH D 7 269 62 HOH TIP . J 3 HOH D 8 270 64 HOH TIP . J 3 HOH D 9 271 66 HOH TIP . J 3 HOH D 10 272 70 HOH TIP . J 3 HOH D 11 273 72 HOH TIP . J 3 HOH D 12 274 74 HOH TIP . J 3 HOH D 13 275 78 HOH TIP . J 3 HOH D 14 276 81 HOH TIP . J 3 HOH D 15 277 86 HOH TIP . J 3 HOH D 16 278 92 HOH TIP . J 3 HOH D 17 279 99 HOH TIP . J 3 HOH D 18 280 118 HOH TIP . J 3 HOH D 19 281 122 HOH TIP . J 3 HOH D 20 282 128 HOH TIP . J 3 HOH D 21 283 130 HOH TIP . J 3 HOH D 22 284 131 HOH TIP . J 3 HOH D 23 285 132 HOH TIP . J 3 HOH D 24 286 133 HOH TIP . J 3 HOH D 25 287 134 HOH TIP . J 3 HOH D 26 288 138 HOH TIP . J 3 HOH D 27 289 139 HOH TIP . J 3 HOH D 28 290 144 HOH TIP . J 3 HOH D 29 291 147 HOH TIP . J 3 HOH D 30 292 152 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . E 2 7.786 35.861 128.391 1 56.05 ? C ACY 263 B 1 HETATM 2 O O ACY . . . E 2 7.75 37.045 128.153 1 55.8 ? O ACY 263 B 1 HETATM 3 O OXT ACY . . . E 2 7.179 35.379 129.489 1 56.22 ? OXT ACY 263 B 1 HETATM 4 C CH3 ACY . . . E 2 8.513 34.931 127.456 1 55.13 ? CH3 ACY 263 B 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #