data_3FFC # _model_server_result.job_id ADgNaJsVLH0q5QgrGCgu-w _model_server_result.datetime_utc '2024-11-25 00:15:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ffc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":103}' # _entry.id 3FFC # _exptl.entry_id 3FFC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FFC _cell.length_a 111.564 _cell.length_b 171.807 _cell.length_c 272.69 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FFC _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? pentameric 5 author_defined_assembly 1 ? pentameric 5 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,PA 1 1 F,G,H,I,J,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,QA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 N N N ? 8 O N N ? 8 T N N ? 8 U N N ? 8 W N N ? 8 Z N N ? 8 GA N N ? 8 HA N N ? 8 KA N N ? 8 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf4 D SG CYS 21 D CYS 23 1_555 D SG CYS 90 D CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 D SG CYS 135 D CYS 145 1_555 D SG CYS 185 D CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 D SG CYS 160 D CYS 170 1_555 E SG CYS 174 E CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 E SG CYS 22 E CYS 23 1_555 E SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf8 E SG CYS 148 E CYS 161 1_555 E SG CYS 213 E CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 F SG CYS 101 F CYS 101 1_555 F SG CYS 164 F CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf10 F SG CYS 203 F CYS 203 1_555 F SG CYS 259 F CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf11 G SG CYS 26 G CYS 25 1_555 G SG CYS 81 G CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf12 I SG CYS 21 I CYS 23 1_555 I SG CYS 90 I CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf13 I SG CYS 135 I CYS 145 1_555 I SG CYS 185 I CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf14 I SG CYS 160 I CYS 170 1_555 J SG CYS 174 J CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf15 J SG CYS 22 J CYS 23 1_555 J SG CYS 91 J CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf16 J SG CYS 148 J CYS 161 1_555 J SG CYS 213 J CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc1 A N GLY 1 A GLY 1 1_555 K CD CD . A CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc2 A O GLY 1 A GLY 1 1_555 K CD CD . A CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 A NE2 HIS 3 A HIS 3 1_555 K CD CD . A CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc4 A OE1 GLU 19 A GLU 19 1_555 DA CD CD . G CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc5 A OD2 ASP 30 A ASP 30 1_555 O NA NA . A NA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc6 A OE1 GLU 180 A GLU 180 1_555 K CD CD . A CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc7 A OE2 GLU 180 A GLU 180 1_555 K CD CD . A CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc8 B OG1 THR 5 B THR 4 1_555 U NA NA . B NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? metalc ? metalc9 B OE2 GLU 37 B GLU 36 1_555 Q CD CD . B CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc10 B OD2 ASP 39 B ASP 38 1_555 Q CD CD . B CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc11 Q CD CD . B CD 100 1_555 F OE1 GLU 19 F GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc12 E NE2 HIS 140 E HIS 153 1_555 X CD CD . E CD 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc13 F N GLY 1 F GLY 1 1_555 BA CD CD . F CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc14 F O GLY 1 F GLY 1 1_555 BA CD CD . F CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc15 F NE2 HIS 3 F HIS 3 1_555 BA CD CD . F CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc16 F OE1 GLU 180 F GLU 180 1_555 BA CD CD . F CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc17 G OE1 GLU 37 G GLU 36 1_555 DA CD CD . G CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc18 G OD1 ASP 39 G ASP 38 1_555 DA CD CD . G CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc19 G OD2 ASP 39 G ASP 38 1_555 DA CD CD . G CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc20 I OD1 ASP 118 I ASP 128 1_555 IA CD CD . I CD 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3FFC _atom_sites.fract_transf_matrix[1][1] 0.008963 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00582 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003667 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 CD A 1 278 1 CD CD . L 7 CL A 1 279 1 CL CL . M 7 CL A 1 280 3 CL CL . N 8 NA A 1 281 6 NA NA . O 8 NA A 1 282 11 NA NA . P 7 CL A 1 283 12 CL CL . Q 6 CD B 1 100 2 CD CD . R 6 CD B 1 101 3 CD CD . S 7 CL B 1 102 8 CL CL . T 8 NA B 1 103 9 NA NA . U 8 NA B 1 104 10 NA NA . V 7 CL D 1 2 2 CL CL . W 8 NA D 1 213 13 NA NA . X 6 CD E 1 261 4 CD CD . Y 6 CD E 1 262 5 CD CD . Z 8 NA E 1 263 14 NA NA . AA 7 CL E 1 264 17 CL CL . BA 6 CD F 1 278 6 CD CD . CA 7 CL F 1 279 4 CL CL . DA 6 CD G 1 100 7 CD CD . EA 6 CD G 1 101 8 CD CD . FA 7 CL G 1 102 5 CL CL . GA 8 NA G 1 103 15 NA NA . HA 8 NA G 1 104 21 NA NA . IA 6 CD I 1 213 9 CD CD . JA 6 CD J 1 261 10 CD CD . KA 8 NA J 1 262 7 NA NA . LA 7 CL J 1 263 16 CL CL . MA 7 CL J 1 264 18 CL CL . NA 8 NA J 1 265 19 NA NA . OA 7 CL J 1 266 20 CL CL . PA 9 HOH A 1 284 1 HOH HOH . QA 9 HOH J 1 267 2 HOH HOH . QA 9 HOH J 2 268 3 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id T _atom_site.label_entity_id 8 _atom_site.Cartn_x -32.756 _atom_site.Cartn_y 13.886 _atom_site.Cartn_z -76.256 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 103 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #