data_3FFC
#
_model_server_result.job_id            AMnU6s85be7Mr4j5Cm28rQ 
_model_server_result.datetime_utc      '2024-11-28 17:06:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ffc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":213}' 
#
_entry.id    3FFC 
#
_exptl.entry_id    3FFC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3FFC 
_cell.length_a            111.564 
_cell.length_b            171.807 
_cell.length_c            272.69 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FFC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? pentameric 5 author_defined_assembly 1 
? pentameric 5 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,PA 1 1 
F,G,H,I,J,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,QA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 N N N 
? 8 O N N 
? 8 T N N 
? 8 U N N 
? 8 W N N 
? 8 Z N N 
? 8 GA N N 
? 8 HA N N 
? 8 KA N N 
? 8 NA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf4 D SG CYS 21 D CYS 23 1_555 D SG CYS 90 D CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf5 D SG CYS 135 D CYS 145 1_555 D SG CYS 185 D CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf6 D SG CYS 160 D CYS 170 1_555 E SG CYS 174 E CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf7 E SG CYS 22 E CYS 23 1_555 E SG CYS 91 E CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf8 E SG CYS 148 E CYS 161 1_555 E SG CYS 213 E CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 F SG CYS 101 F CYS 101 1_555 F SG CYS 164 F CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf10 F SG CYS 203 F CYS 203 1_555 F SG CYS 259 F CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf11 G SG CYS 26 G CYS 25 1_555 G SG CYS 81 G CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf12 I SG CYS 21 I CYS 23 1_555 I SG CYS 90 I CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf13 I SG CYS 135 I CYS 145 1_555 I SG CYS 185 I CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf14 I SG CYS 160 I CYS 170 1_555 J SG CYS 174 J CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf15 J SG CYS 22 J CYS 23 1_555 J SG CYS 91 J CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf16 J SG CYS 148 J CYS 161 1_555 J SG CYS 213 J CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc1 A N GLY 1 A GLY 1 1_555 K CD CD . A CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc2 A O GLY 1 A GLY 1 1_555 K CD CD . A CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc3 A NE2 HIS 3 A HIS 3 1_555 K CD CD . A CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc4 A OE1 GLU 19 A GLU 19 1_555 DA CD CD . G CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc5 A OD2 ASP 30 A ASP 30 1_555 O NA NA . A NA 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? 
metalc ? metalc6 A OE1 GLU 180 A GLU 180 1_555 K CD CD . A CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc7 A OE2 GLU 180 A GLU 180 1_555 K CD CD . A CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
metalc ? metalc8 B OG1 THR 5 B THR 4 1_555 U NA NA . B NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.004 ? 
metalc ? metalc9 B OE2 GLU 37 B GLU 36 1_555 Q CD CD . B CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc10 B OD2 ASP 39 B ASP 38 1_555 Q CD CD . B CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc11 Q CD CD . B CD 100 1_555 F OE1 GLU 19 F GLU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? 
metalc ? metalc12 E NE2 HIS 140 E HIS 153 1_555 X CD CD . E CD 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc13 F N GLY 1 F GLY 1 1_555 BA CD CD . F CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc14 F O GLY 1 F GLY 1 1_555 BA CD CD . F CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? 
metalc ? metalc15 F NE2 HIS 3 F HIS 3 1_555 BA CD CD . F CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc16 F OE1 GLU 180 F GLU 180 1_555 BA CD CD . F CD 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc17 G OE1 GLU 37 G GLU 36 1_555 DA CD CD . G CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc18 G OD1 ASP 39 G ASP 38 1_555 DA CD CD . G CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc19 G OD2 ASP 39 G ASP 38 1_555 DA CD CD . G CD 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc20 I OD1 ASP 118 I ASP 128 1_555 IA CD CD . I CD 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     3FFC 
_atom_sites.fract_transf_matrix[1][1]    0.008963 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00582 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003667 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 6 CD A 1 278 1 CD CD . 
L 7 CL A 1 279 1 CL CL . 
M 7 CL A 1 280 3 CL CL . 
N 8 NA A 1 281 6 NA NA . 
O 8 NA A 1 282 11 NA NA . 
P 7 CL A 1 283 12 CL CL . 
Q 6 CD B 1 100 2 CD CD . 
R 6 CD B 1 101 3 CD CD . 
S 7 CL B 1 102 8 CL CL . 
T 8 NA B 1 103 9 NA NA . 
U 8 NA B 1 104 10 NA NA . 
V 7 CL D 1 2 2 CL CL . 
W 8 NA D 1 213 13 NA NA . 
X 6 CD E 1 261 4 CD CD . 
Y 6 CD E 1 262 5 CD CD . 
Z 8 NA E 1 263 14 NA NA . 
AA 7 CL E 1 264 17 CL CL . 
BA 6 CD F 1 278 6 CD CD . 
CA 7 CL F 1 279 4 CL CL . 
DA 6 CD G 1 100 7 CD CD . 
EA 6 CD G 1 101 8 CD CD . 
FA 7 CL G 1 102 5 CL CL . 
GA 8 NA G 1 103 15 NA NA . 
HA 8 NA G 1 104 21 NA NA . 
IA 6 CD I 1 213 9 CD CD . 
JA 6 CD J 1 261 10 CD CD . 
KA 8 NA J 1 262 7 NA NA . 
LA 7 CL J 1 263 16 CL CL . 
MA 7 CL J 1 264 18 CL CL . 
NA 8 NA J 1 265 19 NA NA . 
OA 7 CL J 1 266 20 CL CL . 
PA 9 HOH A 1 284 1 HOH HOH . 
QA 9 HOH J 1 267 2 HOH HOH . 
QA 9 HOH J 2 268 3 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         W 
_atom_site.label_entity_id       8 
_atom_site.Cartn_x               0 
_atom_site.Cartn_y               0 
_atom_site.Cartn_z               -23.317 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        36.53 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           213 
_atom_site.auth_asym_id          D 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#