data_3FFO # _model_server_result.job_id lN54HDjW4RyPk_vbxaeE0w _model_server_result.datetime_utc '2024-10-14 13:17:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ffo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":207}' # _entry.id 3FFO # _exptl.entry_id 3FFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FFO _cell.length_a 87.389 _cell.length_b 87.389 _cell.length_c 56.809 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 BMA _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BMA 1 B 1 BMA S 2 MAN 2 n B NAG 2 B 2 NAG S 1 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 B O2 BMA . B BMA 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.419 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 392 n n C C2 TRS sing 393 n n C C3 TRS sing 394 n n C N TRS sing 395 n n C1 O1 TRS sing 396 n n C1 H11 TRS sing 397 n n C1 H12 TRS sing 398 n n C2 O2 TRS sing 399 n n C2 H21 TRS sing 400 n n C2 H22 TRS sing 401 n n C3 O3 TRS sing 402 n n C3 H31 TRS sing 403 n n C3 H32 TRS sing 404 n n N HN1 TRS sing 405 n n N HN2 TRS sing 406 n n N HN3 TRS sing 407 n n O1 HO1 TRS sing 408 n n O2 HO2 TRS sing 409 n n O3 HO3 TRS sing 410 n n # _atom_sites.entry_id 3FFO _atom_sites.fract_transf_matrix[1][1] 0.011443 _atom_sites.fract_transf_matrix[1][2] 0.006607 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI A 1 263 263 NI NI . D 4 TRS A 1 207 207 TRS TRS . E 5 SO4 A 1 205 205 SO4 SO4 . F 5 SO4 A 1 206 206 SO4 SO4 . G 6 HOH A 1 226 226 HOH HOH . G 6 HOH A 2 227 227 HOH HOH . G 6 HOH A 3 228 228 HOH HOH . G 6 HOH A 4 229 229 HOH HOH . G 6 HOH A 5 231 231 HOH HOH . G 6 HOH A 6 232 232 HOH HOH . G 6 HOH A 7 233 233 HOH HOH . G 6 HOH A 8 234 234 HOH HOH . G 6 HOH A 9 235 235 HOH HOH . G 6 HOH A 10 238 238 HOH HOH . G 6 HOH A 11 240 240 HOH HOH . G 6 HOH A 12 241 241 HOH HOH . G 6 HOH A 13 242 242 HOH HOH . G 6 HOH A 14 243 243 HOH HOH . G 6 HOH A 15 244 244 HOH HOH . G 6 HOH A 16 245 245 HOH HOH . G 6 HOH A 17 246 246 HOH HOH . G 6 HOH A 18 247 247 HOH HOH . G 6 HOH A 19 248 248 HOH HOH . G 6 HOH A 20 249 249 HOH HOH . G 6 HOH A 21 250 250 HOH HOH . G 6 HOH A 22 251 251 HOH HOH . G 6 HOH A 23 252 252 HOH HOH . G 6 HOH A 24 253 253 HOH HOH . G 6 HOH A 25 254 254 HOH HOH . G 6 HOH A 26 255 255 HOH HOH . G 6 HOH A 27 256 256 HOH HOH . G 6 HOH A 28 257 257 HOH HOH . G 6 HOH A 29 258 258 HOH HOH . G 6 HOH A 30 259 259 HOH HOH . G 6 HOH A 31 260 260 HOH HOH . G 6 HOH A 32 261 261 HOH HOH . G 6 HOH A 33 262 262 HOH HOH . G 6 HOH A 34 264 264 HOH HOH . G 6 HOH A 35 266 266 HOH HOH . G 6 HOH A 36 267 267 HOH HOH . G 6 HOH A 37 269 269 HOH HOH . G 6 HOH A 38 271 271 HOH HOH . G 6 HOH A 39 273 273 HOH HOH . G 6 HOH A 40 274 274 HOH HOH . G 6 HOH A 41 275 275 HOH HOH . G 6 HOH A 42 278 278 HOH HOH . G 6 HOH A 43 279 279 HOH HOH . G 6 HOH A 44 280 280 HOH HOH . G 6 HOH A 45 281 281 HOH HOH . G 6 HOH A 46 282 282 HOH HOH . G 6 HOH A 47 283 283 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 4 -18.274 38.979 0.593 1 64.49 ? C TRS 207 A 1 HETATM 2 C C1 TRS . . . D 4 -17.166 39.745 -0.124 1 79.12 ? C1 TRS 207 A 1 HETATM 3 C C2 TRS . . . D 4 -19.598 39.233 -0.12 1 73.71 ? C2 TRS 207 A 1 HETATM 4 C C3 TRS . . . D 4 -18.372 39.472 2.034 1 73.93 ? C3 TRS 207 A 1 HETATM 5 N N TRS . . . D 4 -17.982 37.557 0.573 1 70.77 ? N TRS 207 A 1 HETATM 6 O O1 TRS . . . D 4 -15.842 39.416 0.189 1 82.46 ? O1 TRS 207 A 1 HETATM 7 O O2 TRS . . . D 4 -19.752 38.692 -1.403 1 82.28 ? O2 TRS 207 A 1 HETATM 8 O O3 TRS . . . D 4 -17.205 39.598 2.799 1 82.49 ? O3 TRS 207 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #