data_3FGW # _model_server_result.job_id 3H_tyRGTKfq4uwDSXFLXSg _model_server_result.datetime_utc '2024-11-29 09:36:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fgw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":606}' # _entry.id 3FGW # _exptl.entry_id 3FGW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.1 _cell.angle_gamma 90 _cell.entry_id 3FGW _cell.length_a 146.69 _cell.length_b 88.11 _cell.length_c 73.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FGW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 146.69 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 11 NAG 2 n B NAG 2 B 2 NAG A 12 NAG 2 n B BMA 3 B 3 BMA A 13 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 147 1_555 A SG CYS 111 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 451 A CYS 497 1_555 A SG CYS 454 A CYS 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 E C1 NAG . A NAG 1 1_555 A ND2 ASN 47 A ASN 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 C C1 NAG . A NAG 21 1_555 A ND2 ASN 190 A ASN 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 D C1 NAG . A NAG 31 1_555 A ND2 ASN 395 A ASN 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale4 A ND2 ASN 69 A ASN 115 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale5 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? metalc ? metalc1 A OH TYR 333 A TYR 379 1_555 P NA NA . A NA 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.907 ? metalc ? metalc2 P NA NA . A NA 610 1_555 Q O HOH . A HOH 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 153 n n C1 C2 GOL sing 154 n n C1 H11 GOL sing 155 n n C1 H12 GOL sing 156 n n O1 HO1 GOL sing 157 n n C2 O2 GOL sing 158 n n C2 C3 GOL sing 159 n n C2 H2 GOL sing 160 n n O2 HO2 GOL sing 161 n n C3 O3 GOL sing 162 n n C3 H31 GOL sing 163 n n C3 H32 GOL sing 164 n n O3 HO3 GOL sing 165 n n # _atom_sites.entry_id 3FGW _atom_sites.fract_transf_matrix[1][1] 0.006817 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00263 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011349 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 21 21 NAG NAG . D 3 NAG A 1 31 31 NAG NAG . E 3 NAG A 1 1 1 NAG NAG . F 4 GOL A 1 4 4 GOL GOL . G 4 GOL A 1 8 8 GOL GOL . H 4 GOL A 1 606 606 GOL GOL . I 5 IOD A 1 607 607 IOD IOD . J 5 IOD A 1 15 15 IOD IOD . K 5 IOD A 1 16 16 IOD IOD . L 5 IOD A 1 17 17 IOD IOD . M 5 IOD A 1 20 20 IOD IOD . N 5 IOD A 1 608 608 IOD IOD . O 5 IOD A 1 609 609 IOD IOD . P 6 NA A 1 610 610 NA NA . Q 7 HOH A 1 2 2 HOH HOH . Q 7 HOH A 2 3 3 HOH HOH . Q 7 HOH A 3 5 5 HOH HOH . Q 7 HOH A 4 6 6 HOH HOH . Q 7 HOH A 5 7 7 HOH HOH . Q 7 HOH A 6 9 9 HOH HOH . Q 7 HOH A 7 10 10 HOH HOH . Q 7 HOH A 8 14 14 HOH HOH . Q 7 HOH A 9 18 18 HOH HOH . Q 7 HOH A 10 19 19 HOH HOH . Q 7 HOH A 11 22 22 HOH HOH . Q 7 HOH A 12 23 23 HOH HOH . Q 7 HOH A 13 24 24 HOH HOH . Q 7 HOH A 14 25 25 HOH HOH . Q 7 HOH A 15 26 26 HOH HOH . Q 7 HOH A 16 27 27 HOH HOH . Q 7 HOH A 17 28 28 HOH HOH . Q 7 HOH A 18 29 29 HOH HOH . Q 7 HOH A 19 30 30 HOH HOH . Q 7 HOH A 20 32 32 HOH HOH . Q 7 HOH A 21 33 33 HOH HOH . Q 7 HOH A 22 34 34 HOH HOH . Q 7 HOH A 23 35 35 HOH HOH . Q 7 HOH A 24 36 36 HOH HOH . Q 7 HOH A 25 37 37 HOH HOH . Q 7 HOH A 26 38 38 HOH HOH . Q 7 HOH A 27 39 39 HOH HOH . Q 7 HOH A 28 40 40 HOH HOH . Q 7 HOH A 29 41 41 HOH HOH . Q 7 HOH A 30 42 42 HOH HOH . Q 7 HOH A 31 43 43 HOH HOH . Q 7 HOH A 32 44 44 HOH HOH . Q 7 HOH A 33 45 45 HOH HOH . Q 7 HOH A 34 611 1 HOH HOH . Q 7 HOH A 35 612 8 HOH HOH . Q 7 HOH A 36 613 11 HOH HOH . Q 7 HOH A 37 614 12 HOH HOH . Q 7 HOH A 38 615 13 HOH HOH . Q 7 HOH A 39 616 15 HOH HOH . Q 7 HOH A 40 617 16 HOH HOH . Q 7 HOH A 41 618 17 HOH HOH . Q 7 HOH A 42 619 20 HOH HOH . Q 7 HOH A 43 620 31 HOH HOH . Q 7 HOH A 44 621 47 HOH HOH . Q 7 HOH A 45 622 48 HOH HOH . Q 7 HOH A 46 623 49 HOH HOH . Q 7 HOH A 47 624 50 HOH HOH . Q 7 HOH A 48 625 51 HOH HOH . Q 7 HOH A 49 626 52 HOH HOH . Q 7 HOH A 50 627 53 HOH HOH . Q 7 HOH A 51 628 55 HOH HOH . Q 7 HOH A 52 629 56 HOH HOH . Q 7 HOH A 53 630 57 HOH HOH . Q 7 HOH A 54 631 58 HOH HOH . Q 7 HOH A 55 632 59 HOH HOH . Q 7 HOH A 56 633 60 HOH HOH . Q 7 HOH A 57 634 61 HOH HOH . Q 7 HOH A 58 635 62 HOH HOH . Q 7 HOH A 59 636 63 HOH HOH . Q 7 HOH A 60 637 64 HOH HOH . Q 7 HOH A 61 638 65 HOH HOH . Q 7 HOH A 62 639 67 HOH HOH . Q 7 HOH A 63 640 69 HOH HOH . Q 7 HOH A 64 641 70 HOH HOH . Q 7 HOH A 65 642 71 HOH HOH . Q 7 HOH A 66 643 72 HOH HOH . Q 7 HOH A 67 644 73 HOH HOH . Q 7 HOH A 68 645 74 HOH HOH . Q 7 HOH A 69 646 75 HOH HOH . Q 7 HOH A 70 647 76 HOH HOH . Q 7 HOH A 71 648 77 HOH HOH . Q 7 HOH A 72 649 78 HOH HOH . Q 7 HOH A 73 650 79 HOH HOH . Q 7 HOH A 74 651 80 HOH HOH . Q 7 HOH A 75 652 81 HOH HOH . Q 7 HOH A 76 653 82 HOH HOH . Q 7 HOH A 77 654 83 HOH HOH . Q 7 HOH A 78 655 84 HOH HOH . Q 7 HOH A 79 656 85 HOH HOH . Q 7 HOH A 80 657 86 HOH HOH . Q 7 HOH A 81 658 87 HOH HOH . Q 7 HOH A 82 659 88 HOH HOH . Q 7 HOH A 83 660 89 HOH HOH . Q 7 HOH A 84 661 90 HOH HOH . Q 7 HOH A 85 662 91 HOH HOH . Q 7 HOH A 86 663 92 HOH HOH . Q 7 HOH A 87 664 93 HOH HOH . Q 7 HOH A 88 665 95 HOH HOH . Q 7 HOH A 89 666 96 HOH HOH . Q 7 HOH A 90 667 99 HOH HOH . Q 7 HOH A 91 668 100 HOH HOH . Q 7 HOH A 92 669 101 HOH HOH . Q 7 HOH A 93 670 102 HOH HOH . Q 7 HOH A 94 671 103 HOH HOH . Q 7 HOH A 95 672 104 HOH HOH . Q 7 HOH A 96 673 106 HOH HOH . Q 7 HOH A 97 674 107 HOH HOH . Q 7 HOH A 98 675 108 HOH HOH . Q 7 HOH A 99 676 110 HOH HOH . Q 7 HOH A 100 677 111 HOH HOH . Q 7 HOH A 101 678 113 HOH HOH . Q 7 HOH A 102 679 114 HOH HOH . Q 7 HOH A 103 680 115 HOH HOH . Q 7 HOH A 104 681 117 HOH HOH . Q 7 HOH A 105 682 118 HOH HOH . Q 7 HOH A 106 683 119 HOH HOH . Q 7 HOH A 107 684 120 HOH HOH . Q 7 HOH A 108 685 122 HOH HOH . Q 7 HOH A 109 686 126 HOH HOH . Q 7 HOH A 110 687 127 HOH HOH . Q 7 HOH A 111 688 128 HOH HOH . Q 7 HOH A 112 689 129 HOH HOH . Q 7 HOH A 113 690 130 HOH HOH . Q 7 HOH A 114 691 132 HOH HOH . Q 7 HOH A 115 692 133 HOH HOH . Q 7 HOH A 116 693 134 HOH HOH . Q 7 HOH A 117 694 136 HOH HOH . Q 7 HOH A 118 695 137 HOH HOH . Q 7 HOH A 119 696 138 HOH HOH . Q 7 HOH A 120 697 139 HOH HOH . Q 7 HOH A 121 698 140 HOH HOH . Q 7 HOH A 122 699 141 HOH HOH . Q 7 HOH A 123 700 142 HOH HOH . Q 7 HOH A 124 701 143 HOH HOH . Q 7 HOH A 125 702 144 HOH HOH . Q 7 HOH A 126 703 145 HOH HOH . Q 7 HOH A 127 704 146 HOH HOH . Q 7 HOH A 128 705 147 HOH HOH . Q 7 HOH A 129 706 148 HOH HOH . Q 7 HOH A 130 707 149 HOH HOH . Q 7 HOH A 131 708 150 HOH HOH . Q 7 HOH A 132 709 152 HOH HOH . Q 7 HOH A 133 710 153 HOH HOH . Q 7 HOH A 134 711 154 HOH HOH . Q 7 HOH A 135 712 155 HOH HOH . Q 7 HOH A 136 713 156 HOH HOH . Q 7 HOH A 137 714 157 HOH HOH . Q 7 HOH A 138 715 158 HOH HOH . Q 7 HOH A 139 716 159 HOH HOH . Q 7 HOH A 140 717 160 HOH HOH . Q 7 HOH A 141 718 161 HOH HOH . Q 7 HOH A 142 719 162 HOH HOH . Q 7 HOH A 143 720 163 HOH HOH . Q 7 HOH A 144 721 164 HOH HOH . Q 7 HOH A 145 722 165 HOH HOH . Q 7 HOH A 146 723 166 HOH HOH . Q 7 HOH A 147 724 167 HOH HOH . Q 7 HOH A 148 725 169 HOH HOH . Q 7 HOH A 149 726 170 HOH HOH . Q 7 HOH A 150 727 171 HOH HOH . Q 7 HOH A 151 728 172 HOH HOH . Q 7 HOH A 152 729 173 HOH HOH . Q 7 HOH A 153 730 174 HOH HOH . Q 7 HOH A 154 731 175 HOH HOH . Q 7 HOH A 155 732 176 HOH HOH . Q 7 HOH A 156 733 177 HOH HOH . Q 7 HOH A 157 734 178 HOH HOH . Q 7 HOH A 158 735 179 HOH HOH . Q 7 HOH A 159 736 180 HOH HOH . Q 7 HOH A 160 737 181 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 34.058 20.228 14.477 1 53.39 ? C1 GOL 606 A 1 HETATM 2 O O1 GOL . . . H 4 32.795 20.722 14.868 1 53.39 ? O1 GOL 606 A 1 HETATM 3 C C2 GOL . . . H 4 34.142 20.155 12.955 1 52.8 ? C2 GOL 606 A 1 HETATM 4 O O2 GOL . . . H 4 35.06 21.122 12.493 1 51.96 ? O2 GOL 606 A 1 HETATM 5 C C3 GOL . . . H 4 34.577 18.752 12.533 1 50.83 ? C3 GOL 606 A 1 HETATM 6 O O3 GOL . . . H 4 35.45 18.803 11.425 1 47.82 ? O3 GOL 606 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #