data_3FH0 # _model_server_result.job_id u3YX2-Riq7-gvJHHmkzoFQ _model_server_result.datetime_utc '2024-10-18 21:27:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fh0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3FH0 # _exptl.entry_id 3FH0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FH0 _cell.length_a 67.604 _cell.length_b 67.604 _cell.length_c 162.986 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FH0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N ILE 5 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C GLY 60 A GLY 57 1_555 A N MSE 61 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 61 A MSE 58 1_555 A N ASP 62 A ASP 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 A C ARG 85 A ARG 82 1_555 A N MSE 86 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C MSE 86 A MSE 83 1_555 A N HIS 87 A HIS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 B C MSE 4 B MSE 1 1_555 B N ILE 5 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale9 B C GLY 60 B GLY 57 1_555 B N MSE 61 B MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 B C MSE 61 B MSE 58 1_555 B N ASP 62 B ASP 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale11 B C ARG 85 B ARG 82 1_555 B N MSE 86 B MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 B C MSE 86 B MSE 83 1_555 B N HIS 87 B HIS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3FH0 _atom_sites.fract_transf_matrix[1][1] 0.014792 _atom_sites.fract_transf_matrix[1][2] 0.00854 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 201 201 ADP ADP . D 3 EDO A 1 202 202 EDO EDO . E 2 ADP B 1 201 201 ADP ADP . F 3 EDO B 1 202 202 EDO EDO . G 3 EDO B 1 203 203 EDO EDO . H 4 HOH A 1 142 142 HOH HOH . H 4 HOH A 2 143 143 HOH HOH . H 4 HOH A 3 144 3 HOH HOH . H 4 HOH A 4 145 5 HOH HOH . H 4 HOH A 5 146 7 HOH HOH . H 4 HOH A 6 147 147 HOH HOH . H 4 HOH A 7 148 148 HOH HOH . H 4 HOH A 8 149 8 HOH HOH . H 4 HOH A 9 150 9 HOH HOH . H 4 HOH A 10 151 13 HOH HOH . H 4 HOH A 11 152 152 HOH HOH . H 4 HOH A 12 153 14 HOH HOH . H 4 HOH A 13 154 15 HOH HOH . H 4 HOH A 14 155 16 HOH HOH . H 4 HOH A 15 156 156 HOH HOH . H 4 HOH A 16 157 19 HOH HOH . H 4 HOH A 17 158 21 HOH HOH . H 4 HOH A 18 159 23 HOH HOH . H 4 HOH A 19 160 24 HOH HOH . H 4 HOH A 20 161 161 HOH HOH . H 4 HOH A 21 162 162 HOH HOH . H 4 HOH A 22 163 25 HOH HOH . H 4 HOH A 23 164 27 HOH HOH . H 4 HOH A 24 165 165 HOH HOH . H 4 HOH A 25 166 166 HOH HOH . H 4 HOH A 26 167 29 HOH HOH . H 4 HOH A 27 168 33 HOH HOH . H 4 HOH A 28 169 34 HOH HOH . H 4 HOH A 29 170 36 HOH HOH . H 4 HOH A 30 171 41 HOH HOH . H 4 HOH A 31 172 42 HOH HOH . H 4 HOH A 32 173 43 HOH HOH . H 4 HOH A 33 174 45 HOH HOH . H 4 HOH A 34 175 46 HOH HOH . H 4 HOH A 35 176 47 HOH HOH . H 4 HOH A 36 177 48 HOH HOH . H 4 HOH A 37 178 50 HOH HOH . H 4 HOH A 38 179 179 HOH HOH . H 4 HOH A 39 180 51 HOH HOH . H 4 HOH A 40 181 54 HOH HOH . H 4 HOH A 41 182 182 HOH HOH . H 4 HOH A 42 183 183 HOH HOH . H 4 HOH A 43 184 55 HOH HOH . H 4 HOH A 44 185 56 HOH HOH . H 4 HOH A 45 186 58 HOH HOH . H 4 HOH A 46 187 187 HOH HOH . H 4 HOH A 47 188 188 HOH HOH . H 4 HOH A 48 189 59 HOH HOH . H 4 HOH A 49 190 190 HOH HOH . H 4 HOH A 50 191 60 HOH HOH . H 4 HOH A 51 192 192 HOH HOH . H 4 HOH A 52 193 193 HOH HOH . H 4 HOH A 53 194 61 HOH HOH . H 4 HOH A 54 195 63 HOH HOH . H 4 HOH A 55 196 65 HOH HOH . H 4 HOH A 56 197 66 HOH HOH . H 4 HOH A 57 198 69 HOH HOH . H 4 HOH A 58 199 76 HOH HOH . H 4 HOH A 59 200 77 HOH HOH . H 4 HOH A 60 203 80 HOH HOH . H 4 HOH A 61 204 84 HOH HOH . H 4 HOH A 62 205 85 HOH HOH . H 4 HOH A 63 206 91 HOH HOH . H 4 HOH A 64 207 92 HOH HOH . H 4 HOH A 65 208 95 HOH HOH . H 4 HOH A 66 209 99 HOH HOH . H 4 HOH A 67 210 101 HOH HOH . H 4 HOH A 68 211 102 HOH HOH . H 4 HOH A 69 212 106 HOH HOH . H 4 HOH A 70 213 107 HOH HOH . H 4 HOH A 71 214 109 HOH HOH . H 4 HOH A 72 215 110 HOH HOH . H 4 HOH A 73 216 112 HOH HOH . H 4 HOH A 74 217 115 HOH HOH . H 4 HOH A 75 218 117 HOH HOH . H 4 HOH A 76 219 119 HOH HOH . H 4 HOH A 77 220 122 HOH HOH . H 4 HOH A 78 221 124 HOH HOH . H 4 HOH A 79 222 126 HOH HOH . H 4 HOH A 80 223 128 HOH HOH . H 4 HOH A 81 224 129 HOH HOH . H 4 HOH A 82 225 133 HOH HOH . H 4 HOH A 83 226 136 HOH HOH . H 4 HOH A 84 227 138 HOH HOH . H 4 HOH A 85 228 94 HOH HOH . I 4 HOH B 1 142 1 HOH HOH . I 4 HOH B 2 143 2 HOH HOH . I 4 HOH B 3 144 144 HOH HOH . I 4 HOH B 4 145 145 HOH HOH . I 4 HOH B 5 146 4 HOH HOH . I 4 HOH B 6 147 6 HOH HOH . I 4 HOH B 7 148 11 HOH HOH . I 4 HOH B 8 149 149 HOH HOH . I 4 HOH B 9 150 12 HOH HOH . I 4 HOH B 10 151 151 HOH HOH . I 4 HOH B 11 152 17 HOH HOH . I 4 HOH B 12 153 153 HOH HOH . I 4 HOH B 13 154 154 HOH HOH . I 4 HOH B 14 155 18 HOH HOH . I 4 HOH B 15 156 20 HOH HOH . I 4 HOH B 16 157 157 HOH HOH . I 4 HOH B 17 158 26 HOH HOH . I 4 HOH B 18 159 159 HOH HOH . I 4 HOH B 19 160 160 HOH HOH . I 4 HOH B 20 161 28 HOH HOH . I 4 HOH B 21 162 30 HOH HOH . I 4 HOH B 22 163 31 HOH HOH . I 4 HOH B 23 164 164 HOH HOH . I 4 HOH B 24 165 32 HOH HOH . I 4 HOH B 25 166 35 HOH HOH . I 4 HOH B 26 167 167 HOH HOH . I 4 HOH B 27 168 37 HOH HOH . I 4 HOH B 28 169 38 HOH HOH . I 4 HOH B 29 170 39 HOH HOH . I 4 HOH B 30 171 171 HOH HOH . I 4 HOH B 31 172 172 HOH HOH . I 4 HOH B 32 173 40 HOH HOH . I 4 HOH B 33 174 44 HOH HOH . I 4 HOH B 34 175 175 HOH HOH . I 4 HOH B 35 176 176 HOH HOH . I 4 HOH B 36 177 49 HOH HOH . I 4 HOH B 37 178 52 HOH HOH . I 4 HOH B 38 179 53 HOH HOH . I 4 HOH B 39 180 57 HOH HOH . I 4 HOH B 40 181 62 HOH HOH . I 4 HOH B 41 182 64 HOH HOH . I 4 HOH B 42 183 67 HOH HOH . I 4 HOH B 43 184 184 HOH HOH . I 4 HOH B 44 185 68 HOH HOH . I 4 HOH B 45 186 186 HOH HOH . I 4 HOH B 46 187 70 HOH HOH . I 4 HOH B 47 188 71 HOH HOH . I 4 HOH B 48 189 189 HOH HOH . I 4 HOH B 49 190 72 HOH HOH . I 4 HOH B 50 191 191 HOH HOH . I 4 HOH B 51 192 73 HOH HOH . I 4 HOH B 52 193 75 HOH HOH . I 4 HOH B 53 194 78 HOH HOH . I 4 HOH B 54 195 79 HOH HOH . I 4 HOH B 55 196 81 HOH HOH . I 4 HOH B 56 197 82 HOH HOH . I 4 HOH B 57 198 83 HOH HOH . I 4 HOH B 58 199 87 HOH HOH . I 4 HOH B 59 200 88 HOH HOH . I 4 HOH B 60 204 89 HOH HOH . I 4 HOH B 61 205 90 HOH HOH . I 4 HOH B 62 206 93 HOH HOH . I 4 HOH B 63 208 96 HOH HOH . I 4 HOH B 64 209 97 HOH HOH . I 4 HOH B 65 210 98 HOH HOH . I 4 HOH B 66 211 100 HOH HOH . I 4 HOH B 67 212 103 HOH HOH . I 4 HOH B 68 213 104 HOH HOH . I 4 HOH B 69 214 111 HOH HOH . I 4 HOH B 70 215 113 HOH HOH . I 4 HOH B 71 216 114 HOH HOH . I 4 HOH B 72 217 116 HOH HOH . I 4 HOH B 73 218 118 HOH HOH . I 4 HOH B 74 219 120 HOH HOH . I 4 HOH B 75 220 121 HOH HOH . I 4 HOH B 76 221 123 HOH HOH . I 4 HOH B 77 222 125 HOH HOH . I 4 HOH B 78 223 130 HOH HOH . I 4 HOH B 79 224 131 HOH HOH . I 4 HOH B 80 225 134 HOH HOH . I 4 HOH B 81 226 135 HOH HOH . I 4 HOH B 82 227 140 HOH HOH . I 4 HOH B 83 228 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 26.33 31.926 11.71 0.6 51.51 ? PB ADP 201 A 1 HETATM 2 O O1B ADP . . . C 2 25.321 31.021 12.38 0.6 52.42 ? O1B ADP 201 A 1 HETATM 3 O O2B ADP . . . C 2 26.857 32.952 12.684 0.6 53.17 ? O2B ADP 201 A 1 HETATM 4 O O3B ADP . . . C 2 27.402 31.254 10.885 0.6 48.15 ? O3B ADP 201 A 1 HETATM 5 P PA ADP . . . C 2 24.355 33.832 11.089 0.6 44.65 ? PA ADP 201 A 1 HETATM 6 O O1A ADP . . . C 2 23.649 33.414 12.334 0.6 44.74 ? O1A ADP 201 A 1 HETATM 7 O O2A ADP . . . C 2 23.592 34.213 9.847 0.6 43.73 ? O2A ADP 201 A 1 HETATM 8 O O3A ADP . . . C 2 25.479 32.778 10.647 0.6 46.15 ? O3A ADP 201 A 1 HETATM 9 O O5' ADP . . . C 2 25.228 35.127 11.513 0.6 45.91 ? O5' ADP 201 A 1 HETATM 10 C C5' ADP . . . C 2 25.732 36.002 10.495 0.6 40.75 ? C5' ADP 201 A 1 HETATM 11 C C4' ADP . . . C 2 25.533 37.413 10.989 0.6 39.98 ? C4' ADP 201 A 1 HETATM 12 O O4' ADP . . . C 2 24.217 37.645 11.51 0.6 39.18 ? O4' ADP 201 A 1 HETATM 13 C C3' ADP . . . C 2 26.471 37.777 12.129 0.6 38.41 ? C3' ADP 201 A 1 HETATM 14 O O3' ADP . . . C 2 27.746 38.13 11.613 0.6 39.77 ? O3' ADP 201 A 1 HETATM 15 C C2' ADP . . . C 2 25.76 38.964 12.723 0.6 37.45 ? C2' ADP 201 A 1 HETATM 16 O O2' ADP . . . C 2 26.054 40.149 11.961 0.6 38.19 ? O2' ADP 201 A 1 HETATM 17 C C1' ADP . . . C 2 24.287 38.583 12.588 0.6 37.03 ? C1' ADP 201 A 1 HETATM 18 N N9 ADP . . . C 2 23.953 37.955 13.892 0.6 36.94 ? N9 ADP 201 A 1 HETATM 19 C C8 ADP . . . C 2 23.967 36.633 14.195 0.6 35.77 ? C8 ADP 201 A 1 HETATM 20 N N7 ADP . . . C 2 23.648 36.44 15.505 0.6 36.07 ? N7 ADP 201 A 1 HETATM 21 C C5 ADP . . . C 2 23.44 37.648 16.07 0.6 34.39 ? C5 ADP 201 A 1 HETATM 22 C C6 ADP . . . C 2 23.083 38.167 17.417 0.6 34.6 ? C6 ADP 201 A 1 HETATM 23 N N6 ADP . . . C 2 22.858 37.323 18.468 0.6 30.38 ? N6 ADP 201 A 1 HETATM 24 N N1 ADP . . . C 2 22.976 39.518 17.554 0.6 31.37 ? N1 ADP 201 A 1 HETATM 25 C C2 ADP . . . C 2 23.171 40.363 16.533 0.6 33.98 ? C2 ADP 201 A 1 HETATM 26 N N3 ADP . . . C 2 23.509 39.964 15.292 0.6 34.54 ? N3 ADP 201 A 1 HETATM 27 C C4 ADP . . . C 2 23.654 38.644 15.004 0.6 35.19 ? C4 ADP 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #