data_3FHI # _model_server_result.job_id hQuyj0SgBcETd4Nb5js6Zw _model_server_result.datetime_utc '2024-11-26 15:58:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fhi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":400}' # _entry.id 3FHI # _exptl.entry_id 3FHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FHI _cell.length_a 54.453 _cell.length_b 93.017 _cell.length_c 122.043 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale3 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD1 ASN 171 A ASN 171 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc2 A OD1 ASP 184 A ASP 184 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc3 A OD2 ASP 184 A ASP 184 1_555 E MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc4 F O HOH . A HOH 356 1_555 E MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc5 F O HOH . A HOH 372 1_555 E MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc6 C O2G ANP . A ANP 400 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc7 C O2A ANP . A ANP 400 1_555 D MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc8 C O1G ANP . A ANP 400 1_555 E MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? metalc ? metalc9 C O2B ANP . A ANP 400 1_555 E MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc10 D MN MN . A MN 401 1_555 F O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.905 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3FHI _atom_sites.fract_transf_matrix[1][1] 0.018364 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010751 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ANP A 1 400 400 ANP ANP . D 4 MN A 1 401 401 MN MN . E 4 MN A 1 402 402 MN MN . F 5 HOH A 1 351 1 HOH HOH . F 5 HOH A 2 352 2 HOH HOH . F 5 HOH A 3 353 3 HOH HOH . F 5 HOH A 4 354 4 HOH HOH . F 5 HOH A 5 355 5 HOH HOH . F 5 HOH A 6 356 6 HOH HOH . F 5 HOH A 7 357 8 HOH HOH . F 5 HOH A 8 358 9 HOH HOH . F 5 HOH A 9 359 11 HOH HOH . F 5 HOH A 10 360 12 HOH HOH . F 5 HOH A 11 361 13 HOH HOH . F 5 HOH A 12 362 14 HOH HOH . F 5 HOH A 13 363 15 HOH HOH . F 5 HOH A 14 364 16 HOH HOH . F 5 HOH A 15 365 17 HOH HOH . F 5 HOH A 16 366 18 HOH HOH . F 5 HOH A 17 367 19 HOH HOH . F 5 HOH A 18 368 20 HOH HOH . F 5 HOH A 19 369 21 HOH HOH . F 5 HOH A 20 370 22 HOH HOH . F 5 HOH A 21 371 23 HOH HOH . F 5 HOH A 22 372 24 HOH HOH . F 5 HOH A 23 373 25 HOH HOH . F 5 HOH A 24 374 26 HOH HOH . F 5 HOH A 25 375 27 HOH HOH . F 5 HOH A 26 376 28 HOH HOH . F 5 HOH A 27 377 29 HOH HOH . F 5 HOH A 28 378 30 HOH HOH . F 5 HOH A 29 379 31 HOH HOH . F 5 HOH A 30 380 32 HOH HOH . F 5 HOH A 31 381 33 HOH HOH . F 5 HOH A 32 382 34 HOH HOH . F 5 HOH A 33 383 35 HOH HOH . F 5 HOH A 34 384 36 HOH HOH . F 5 HOH A 35 385 37 HOH HOH . F 5 HOH A 36 386 38 HOH HOH . F 5 HOH A 37 387 39 HOH HOH . F 5 HOH A 38 388 40 HOH HOH . F 5 HOH A 39 389 41 HOH HOH . F 5 HOH A 40 390 42 HOH HOH . F 5 HOH A 41 391 44 HOH HOH . F 5 HOH A 42 392 45 HOH HOH . F 5 HOH A 43 393 46 HOH HOH . F 5 HOH A 44 394 47 HOH HOH . F 5 HOH A 45 395 48 HOH HOH . F 5 HOH A 46 396 49 HOH HOH . F 5 HOH A 47 397 50 HOH HOH . F 5 HOH A 48 398 51 HOH HOH . F 5 HOH A 49 399 52 HOH HOH . F 5 HOH A 50 403 53 HOH HOH . F 5 HOH A 51 404 54 HOH HOH . F 5 HOH A 52 405 55 HOH HOH . F 5 HOH A 53 406 56 HOH HOH . F 5 HOH A 54 407 57 HOH HOH . F 5 HOH A 55 408 59 HOH HOH . F 5 HOH A 56 409 60 HOH HOH . F 5 HOH A 57 410 61 HOH HOH . F 5 HOH A 58 411 63 HOH HOH . F 5 HOH A 59 412 64 HOH HOH . F 5 HOH A 60 413 66 HOH HOH . F 5 HOH A 61 414 67 HOH HOH . F 5 HOH A 62 415 68 HOH HOH . F 5 HOH A 63 416 69 HOH HOH . F 5 HOH A 64 417 70 HOH HOH . F 5 HOH A 65 418 71 HOH HOH . F 5 HOH A 66 419 72 HOH HOH . F 5 HOH A 67 420 73 HOH HOH . F 5 HOH A 68 421 74 HOH HOH . F 5 HOH A 69 422 75 HOH HOH . F 5 HOH A 70 423 76 HOH HOH . F 5 HOH A 71 424 77 HOH HOH . F 5 HOH A 72 425 78 HOH HOH . F 5 HOH A 73 426 79 HOH HOH . F 5 HOH A 74 427 80 HOH HOH . F 5 HOH A 75 428 81 HOH HOH . F 5 HOH A 76 429 82 HOH HOH . F 5 HOH A 77 430 83 HOH HOH . F 5 HOH A 78 431 84 HOH HOH . F 5 HOH A 79 432 85 HOH HOH . F 5 HOH A 80 433 86 HOH HOH . F 5 HOH A 81 434 87 HOH HOH . F 5 HOH A 82 435 88 HOH HOH . F 5 HOH A 83 436 89 HOH HOH . F 5 HOH A 84 437 90 HOH HOH . F 5 HOH A 85 438 91 HOH HOH . F 5 HOH A 86 439 92 HOH HOH . F 5 HOH A 87 440 93 HOH HOH . F 5 HOH A 88 441 94 HOH HOH . F 5 HOH A 89 442 95 HOH HOH . F 5 HOH A 90 443 96 HOH HOH . F 5 HOH A 91 444 97 HOH HOH . F 5 HOH A 92 445 98 HOH HOH . F 5 HOH A 93 446 99 HOH HOH . F 5 HOH A 94 447 100 HOH HOH . F 5 HOH A 95 448 101 HOH HOH . F 5 HOH A 96 449 102 HOH HOH . F 5 HOH A 97 450 103 HOH HOH . F 5 HOH A 98 451 104 HOH HOH . F 5 HOH A 99 452 105 HOH HOH . F 5 HOH A 100 453 106 HOH HOH . F 5 HOH A 101 454 107 HOH HOH . F 5 HOH A 102 455 108 HOH HOH . F 5 HOH A 103 456 109 HOH HOH . F 5 HOH A 104 457 110 HOH HOH . F 5 HOH A 105 458 111 HOH HOH . F 5 HOH A 106 459 112 HOH HOH . F 5 HOH A 107 460 113 HOH HOH . F 5 HOH A 108 461 114 HOH HOH . F 5 HOH A 109 462 115 HOH HOH . F 5 HOH A 110 463 116 HOH HOH . F 5 HOH A 111 464 117 HOH HOH . F 5 HOH A 112 465 118 HOH HOH . F 5 HOH A 113 466 119 HOH HOH . F 5 HOH A 114 467 121 HOH HOH . F 5 HOH A 115 468 122 HOH HOH . F 5 HOH A 116 469 123 HOH HOH . F 5 HOH A 117 470 124 HOH HOH . F 5 HOH A 118 471 125 HOH HOH . F 5 HOH A 119 472 126 HOH HOH . F 5 HOH A 120 473 128 HOH HOH . F 5 HOH A 121 474 129 HOH HOH . F 5 HOH A 122 475 130 HOH HOH . F 5 HOH A 123 476 131 HOH HOH . F 5 HOH A 124 477 132 HOH HOH . F 5 HOH A 125 478 133 HOH HOH . F 5 HOH A 126 479 134 HOH HOH . F 5 HOH A 127 480 136 HOH HOH . F 5 HOH A 128 481 137 HOH HOH . F 5 HOH A 129 482 138 HOH HOH . F 5 HOH A 130 483 139 HOH HOH . F 5 HOH A 131 484 140 HOH HOH . F 5 HOH A 132 485 141 HOH HOH . F 5 HOH A 133 486 142 HOH HOH . F 5 HOH A 134 487 143 HOH HOH . F 5 HOH A 135 488 144 HOH HOH . F 5 HOH A 136 489 145 HOH HOH . F 5 HOH A 137 490 146 HOH HOH . F 5 HOH A 138 491 147 HOH HOH . F 5 HOH A 139 492 148 HOH HOH . F 5 HOH A 140 493 149 HOH HOH . F 5 HOH A 141 494 150 HOH HOH . F 5 HOH A 142 495 151 HOH HOH . F 5 HOH A 143 496 152 HOH HOH . F 5 HOH A 144 497 153 HOH HOH . F 5 HOH A 145 498 154 HOH HOH . F 5 HOH A 146 499 155 HOH HOH . F 5 HOH A 147 500 156 HOH HOH . F 5 HOH A 148 501 157 HOH HOH . F 5 HOH A 149 502 158 HOH HOH . F 5 HOH A 150 503 159 HOH HOH . F 5 HOH A 151 504 160 HOH HOH . F 5 HOH A 152 505 161 HOH HOH . F 5 HOH A 153 506 162 HOH HOH . F 5 HOH A 154 507 163 HOH HOH . F 5 HOH A 155 508 164 HOH HOH . F 5 HOH A 156 509 165 HOH HOH . F 5 HOH A 157 510 166 HOH HOH . G 5 HOH B 1 7 7 HOH HOH . G 5 HOH B 2 10 10 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 13.793 11.533 39.072 1 21.29 ? PG ANP 400 A 1 HETATM 2 O O1G ANP . . . C 3 15.223 11.97 38.484 1 17.38 ? O1G ANP 400 A 1 HETATM 3 O O2G ANP . . . C 3 13.997 10.575 40.307 1 24.81 ? O2G ANP 400 A 1 HETATM 4 O O3G ANP . . . C 3 12.741 12.625 39.417 1 14.79 ? O3G ANP 400 A 1 HETATM 5 P PB ANP . . . C 3 13.659 10.44 36.252 1 20.33 ? PB ANP 400 A 1 HETATM 6 O O1B ANP . . . C 3 12.946 11.574 35.407 1 21.01 ? O1B ANP 400 A 1 HETATM 7 O O2B ANP . . . C 3 15.198 10.557 36.05 1 22.05 ? O2B ANP 400 A 1 HETATM 8 N N3B ANP . . . C 3 12.997 10.617 37.853 1 21.13 ? N3B ANP 400 A 1 HETATM 9 P PA ANP . . . C 3 13.558 7.54 36.14 1 24.45 ? PA ANP 400 A 1 HETATM 10 O O1A ANP . . . C 3 14.845 6.977 35.377 1 26.21 ? O1A ANP 400 A 1 HETATM 11 O O2A ANP . . . C 3 13.657 7.305 37.692 1 26.53 ? O2A ANP 400 A 1 HETATM 12 O O3A ANP . . . C 3 13.093 9.031 35.701 1 23.75 ? O3A ANP 400 A 1 HETATM 13 O O5' ANP . . . C 3 12.275 6.78 35.615 1 23.04 ? O5' ANP 400 A 1 HETATM 14 C C5' ANP . . . C 3 11.02 7.264 36.066 1 22.4 ? C5' ANP 400 A 1 HETATM 15 C C4' ANP . . . C 3 10.192 6.122 36.613 1 22.75 ? C4' ANP 400 A 1 HETATM 16 O O4' ANP . . . C 3 9.885 5.131 35.613 1 24.26 ? O4' ANP 400 A 1 HETATM 17 C C3' ANP . . . C 3 10.722 5.383 37.838 1 24.77 ? C3' ANP 400 A 1 HETATM 18 O O3' ANP . . . C 3 10.447 5.934 39.126 1 24.44 ? O3' ANP 400 A 1 HETATM 19 C C2' ANP . . . C 3 10.355 3.944 37.578 1 23.34 ? C2' ANP 400 A 1 HETATM 20 O O2' ANP . . . C 3 9.109 3.667 38.224 1 23.42 ? O2' ANP 400 A 1 HETATM 21 C C1' ANP . . . C 3 9.992 3.8 36.132 1 20.4 ? C1' ANP 400 A 1 HETATM 22 N N9 ANP . . . C 3 11.142 3.024 35.57 1 19.38 ? N9 ANP 400 A 1 HETATM 23 C C8 ANP . . . C 3 12.401 3.482 35.366 1 18.36 ? C8 ANP 400 A 1 HETATM 24 N N7 ANP . . . C 3 13.228 2.516 34.863 1 18.33 ? N7 ANP 400 A 1 HETATM 25 C C5 ANP . . . C 3 12.495 1.401 34.723 1 18.1 ? C5 ANP 400 A 1 HETATM 26 C C6 ANP . . . C 3 12.657 -0.004 34.317 1 16.56 ? C6 ANP 400 A 1 HETATM 27 N N6 ANP . . . C 3 13.844 -0.43 33.87 1 17.91 ? N6 ANP 400 A 1 HETATM 28 N N1 ANP . . . C 3 11.612 -0.852 34.387 1 18.6 ? N1 ANP 400 A 1 HETATM 29 C C2 ANP . . . C 3 10.398 -0.479 34.83 1 18.23 ? C2 ANP 400 A 1 HETATM 30 N N3 ANP . . . C 3 10.151 0.774 35.239 1 16.32 ? N3 ANP 400 A 1 HETATM 31 C C4 ANP . . . C 3 11.18 1.747 35.201 1 17.82 ? C4 ANP 400 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #