data_3FHM # _model_server_result.job_id eSqLBpC-uUyIWdvNZ3BnSg _model_server_result.datetime_utc '2025-04-16 16:53:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fhm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":211}' # _entry.id 3FHM # _exptl.entry_id 3FHM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 115.21 _cell.angle_beta 106.15 _cell.angle_gamma 94.94 _cell.entry_id 3FHM _cell.length_a 53.247 _cell.length_b 58.075 _cell.length_c 59.056 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FHM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,N,O,P,Q,T 1 1 B,C,H,I,J,K,L,M,R,S 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 276 n n PA O2A NAI sing 277 n n PA O5B NAI sing 278 n n PA O3 NAI sing 279 n n O2A HOA2 NAI sing 280 n n O5B C5B NAI sing 281 n n C5B C4B NAI sing 282 n n C5B H51A NAI sing 283 n n C5B H52A NAI sing 284 n n C4B O4B NAI sing 285 n n C4B C3B NAI sing 286 n n C4B H4B NAI sing 287 n n O4B C1B NAI sing 288 n n C3B O3B NAI sing 289 n n C3B C2B NAI sing 290 n n C3B H3B NAI sing 291 n n O3B HO3A NAI sing 292 n n C2B O2B NAI sing 293 n n C2B C1B NAI sing 294 n n C2B H2B NAI sing 295 n n O2B HO2A NAI sing 296 n n C1B N9A NAI sing 297 n n C1B H1B NAI sing 298 n n N9A C8A NAI sing 299 n y N9A C4A NAI sing 300 n y C8A N7A NAI doub 301 n y C8A H8A NAI sing 302 n n N7A C5A NAI sing 303 n y C5A C6A NAI sing 304 n y C5A C4A NAI doub 305 n y C6A N6A NAI sing 306 n n C6A N1A NAI doub 307 n y N6A H61A NAI sing 308 n n N6A H62A NAI sing 309 n n N1A C2A NAI sing 310 n y C2A N3A NAI doub 311 n y C2A H2A NAI sing 312 n n N3A C4A NAI sing 313 n y O3 PN NAI sing 314 n n PN O1N NAI sing 315 n n PN O2N NAI doub 316 n n PN O5D NAI sing 317 n n O1N HO1N NAI sing 318 n n O5D C5D NAI sing 319 n n C5D C4D NAI sing 320 n n C5D H51N NAI sing 321 n n C5D H52N NAI sing 322 n n C4D O4D NAI sing 323 n n C4D C3D NAI sing 324 n n C4D H4D NAI sing 325 n n O4D C1D NAI sing 326 n n C3D O3D NAI sing 327 n n C3D C2D NAI sing 328 n n C3D H3D NAI sing 329 n n O3D HO3N NAI sing 330 n n C2D O2D NAI sing 331 n n C2D C1D NAI sing 332 n n C2D H2D NAI sing 333 n n O2D HO2N NAI sing 334 n n C1D N1N NAI sing 335 n n C1D H1D NAI sing 336 n n N1N C2N NAI sing 337 n n N1N C6N NAI sing 338 n n C2N C3N NAI doub 339 n n C2N H2N NAI sing 340 n n C3N C7N NAI sing 341 n n C3N C4N NAI sing 342 n n C7N O7N NAI doub 343 n n C7N N7N NAI sing 344 n n N7N H71N NAI sing 345 n n N7N H72N NAI sing 346 n n C4N C5N NAI sing 347 n n C4N H4N NAI sing 348 n n C4N H42N NAI sing 349 n n C5N C6N NAI doub 350 n n C5N H5N NAI sing 351 n n C6N H6N NAI sing 352 n n # _atom_sites.entry_id 3FHM _atom_sites.fract_transf_matrix[1][1] 0.01878 _atom_sites.fract_transf_matrix[1][2] 0.001624 _atom_sites.fract_transf_matrix[1][3] 0.007027 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017283 _atom_sites.fract_transf_matrix[2][3] 0.009206 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 AMP A 1 200 200 AMP AMP . F 3 NAI A 1 211 211 NAI NAI . G 4 SO4 A 1 145 3 SO4 SO4 . H 2 AMP B 1 200 200 AMP AMP . I 3 NAI B 1 211 211 NAI NAI . J 4 SO4 B 1 145 2 SO4 SO4 . K 2 AMP C 1 200 200 AMP AMP . L 3 NAI C 1 211 211 NAI NAI . M 4 SO4 C 1 145 1 SO4 SO4 . N 2 AMP D 1 200 200 AMP AMP . O 3 NAI D 1 211 211 NAI NAI . P 4 SO4 D 1 145 4 SO4 SO4 . Q 5 HOH A 1 146 4 HOH HOH . Q 5 HOH A 2 147 10 HOH HOH . Q 5 HOH A 3 148 16 HOH HOH . Q 5 HOH A 4 149 30 HOH HOH . Q 5 HOH A 5 150 45 HOH HOH . Q 5 HOH A 6 151 48 HOH HOH . Q 5 HOH A 7 152 56 HOH HOH . Q 5 HOH A 8 153 57 HOH HOH . Q 5 HOH A 9 154 62 HOH HOH . R 5 HOH B 1 146 7 HOH HOH . R 5 HOH B 2 147 14 HOH HOH . R 5 HOH B 3 148 21 HOH HOH . R 5 HOH B 4 149 32 HOH HOH . R 5 HOH B 5 150 33 HOH HOH . R 5 HOH B 6 151 35 HOH HOH . R 5 HOH B 7 152 42 HOH HOH . R 5 HOH B 8 153 50 HOH HOH . R 5 HOH B 9 154 60 HOH HOH . R 5 HOH B 10 155 61 HOH HOH . R 5 HOH B 11 156 63 HOH HOH . R 5 HOH B 12 157 67 HOH HOH . R 5 HOH B 13 158 1 HOH HOH . S 5 HOH C 1 146 2 HOH HOH . S 5 HOH C 2 147 9 HOH HOH . S 5 HOH C 3 148 12 HOH HOH . S 5 HOH C 4 149 20 HOH HOH . S 5 HOH C 5 150 23 HOH HOH . S 5 HOH C 6 151 31 HOH HOH . S 5 HOH C 7 152 34 HOH HOH . S 5 HOH C 8 153 43 HOH HOH . S 5 HOH C 9 154 46 HOH HOH . S 5 HOH C 10 155 54 HOH HOH . S 5 HOH C 11 156 68 HOH HOH . S 5 HOH C 12 157 69 HOH HOH . T 5 HOH D 1 146 3 HOH HOH . T 5 HOH D 2 147 6 HOH HOH . T 5 HOH D 3 148 8 HOH HOH . T 5 HOH D 4 149 11 HOH HOH . T 5 HOH D 5 150 17 HOH HOH . T 5 HOH D 6 151 22 HOH HOH . T 5 HOH D 7 152 27 HOH HOH . T 5 HOH D 8 153 39 HOH HOH . T 5 HOH D 9 154 41 HOH HOH . T 5 HOH D 10 155 55 HOH HOH . T 5 HOH D 11 156 64 HOH HOH . T 5 HOH D 12 157 66 HOH HOH . T 5 HOH D 13 158 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . L 3 -30.963 -20.203 31.242 1 23.26 ? PA NAI 211 C 1 HETATM 2 O O1A NAI . . . L 3 -29.577 -19.654 31.247 1 20.13 ? O1A NAI 211 C 1 HETATM 3 O O2A NAI . . . L 3 -31.202 -21.637 31.548 1 22.65 ? O2A NAI 211 C 1 HETATM 4 O O5B NAI . . . L 3 -31.724 -20.11 29.812 1 25.68 ? O5B NAI 211 C 1 HETATM 5 C C5B NAI . . . L 3 -31.225 -19.275 28.739 1 25.48 ? C5B NAI 211 C 1 HETATM 6 C C4B NAI . . . L 3 -31.942 -19.452 27.409 1 25.01 ? C4B NAI 211 C 1 HETATM 7 O O4B NAI . . . L 3 -31.765 -20.834 27.187 1 25.84 ? O4B NAI 211 C 1 HETATM 8 C C3B NAI . . . L 3 -33.456 -19.266 27.49 1 28.17 ? C3B NAI 211 C 1 HETATM 9 O O3B NAI . . . L 3 -34.037 -19.005 26.21 1 28.56 ? O3B NAI 211 C 1 HETATM 10 C C2B NAI . . . L 3 -33.976 -20.599 27.99 1 26.82 ? C2B NAI 211 C 1 HETATM 11 O O2B NAI . . . L 3 -35.331 -20.812 27.564 1 27.11 ? O2B NAI 211 C 1 HETATM 12 C C1B NAI . . . L 3 -33.002 -21.526 27.308 1 26.02 ? C1B NAI 211 C 1 HETATM 13 N N9A NAI . . . L 3 -32.865 -22.762 28.071 1 26.48 ? N9A NAI 211 C 1 HETATM 14 C C8A NAI . . . L 3 -32.61 -22.937 29.397 1 27.08 ? C8A NAI 211 C 1 HETATM 15 N N7A NAI . . . L 3 -32.574 -24.285 29.684 1 27.36 ? N7A NAI 211 C 1 HETATM 16 C C5A NAI . . . L 3 -32.827 -24.974 28.523 1 26.73 ? C5A NAI 211 C 1 HETATM 17 C C6A NAI . . . L 3 -32.974 -26.402 28.053 1 27.63 ? C6A NAI 211 C 1 HETATM 18 N N6A NAI . . . L 3 -32.818 -27.46 28.885 1 26.46 ? N6A NAI 211 C 1 HETATM 19 N N1A NAI . . . L 3 -33.241 -26.634 26.724 1 29.04 ? N1A NAI 211 C 1 HETATM 20 C C2A NAI . . . L 3 -33.384 -25.639 25.82 1 27.92 ? C2A NAI 211 C 1 HETATM 21 N N3A NAI . . . L 3 -33.269 -24.341 26.178 1 27.42 ? N3A NAI 211 C 1 HETATM 22 C C4A NAI . . . L 3 -33.004 -23.953 27.468 1 26.81 ? C4A NAI 211 C 1 HETATM 23 O O3 NAI . . . L 3 -31.839 -19.357 32.27 1 26.04 ? O3 NAI 211 C 1 HETATM 24 P PN NAI . . . L 3 -32.026 -17.738 32.181 1 28.01 ? PN NAI 211 C 1 HETATM 25 O O1N NAI . . . L 3 -31.82 -17.141 33.574 1 26.61 ? O1N NAI 211 C 1 HETATM 26 O O2N NAI . . . L 3 -33.356 -17.641 31.58 1 29.32 ? O2N NAI 211 C 1 HETATM 27 O O5D NAI . . . L 3 -30.872 -17.181 31.223 1 29.65 ? O5D NAI 211 C 1 HETATM 28 C C5D NAI . . . L 3 -29.759 -16.558 31.908 1 28.36 ? C5D NAI 211 C 1 HETATM 29 C C4D NAI . . . L 3 -29.512 -15.083 31.646 1 29.26 ? C4D NAI 211 C 1 HETATM 30 O O4D NAI . . . L 3 -29.546 -14.852 30.231 1 33.54 ? O4D NAI 211 C 1 HETATM 31 C C3D NAI . . . L 3 -30.57 -14.194 32.261 1 30.71 ? C3D NAI 211 C 1 HETATM 32 O O3D NAI . . . L 3 -29.866 -13.08 32.802 1 31.91 ? O3D NAI 211 C 1 HETATM 33 C C2D NAI . . . L 3 -31.45 -13.708 31.125 1 31.05 ? C2D NAI 211 C 1 HETATM 34 O O2D NAI . . . L 3 -31.792 -12.345 31.223 1 29.95 ? O2D NAI 211 C 1 HETATM 35 C C1D NAI . . . L 3 -30.585 -13.906 29.878 1 35.47 ? C1D NAI 211 C 1 HETATM 36 N N1N NAI . . . L 3 -31.38 -14.259 28.66 1 36.28 ? N1N NAI 211 C 1 HETATM 37 C C2N NAI . . . L 3 -31.244 -13.476 27.565 1 37.18 ? C2N NAI 211 C 1 HETATM 38 C C3N NAI . . . L 3 -31.971 -13.759 26.41 1 39.3 ? C3N NAI 211 C 1 HETATM 39 C C7N NAI . . . L 3 -31.819 -12.898 25.19 1 39.53 ? C7N NAI 211 C 1 HETATM 40 O O7N NAI . . . L 3 -32.45 -13.166 24.196 1 43.41 ? O7N NAI 211 C 1 HETATM 41 N N7N NAI . . . L 3 -31.048 -11.822 25.2 1 42.69 ? N7N NAI 211 C 1 HETATM 42 C C4N NAI . . . L 3 -32.873 -14.843 26.411 1 36.73 ? C4N NAI 211 C 1 HETATM 43 C C5N NAI . . . L 3 -33.039 -15.623 27.563 1 37.42 ? C5N NAI 211 C 1 HETATM 44 C C6N NAI . . . L 3 -32.262 -15.303 28.666 1 37.23 ? C6N NAI 211 C 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #