data_3FHX # _model_server_result.job_id dgRDTopaHELRPAE5EUXqUg _model_server_result.datetime_utc '2024-11-05 11:04:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fhx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":406}' # _entry.id 3FHX # _exptl.entry_id 3FHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FHX _cell.length_a 91.224 _cell.length_b 115.422 _cell.length_c 168.898 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 118 A ASP 118 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc2 A O THR 148 A THR 148 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc3 A OG1 THR 186 A THR 186 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc4 AA O HOH . A HOH 389 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc5 AA O HOH . A HOH 390 1_555 C MG MG . A MG 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc6 AA O HOH . A HOH 392 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc7 C MG MG . A MG 400 1_555 E O2A ATP . A ATP 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc8 C MG MG . A MG 400 1_555 E O1B ATP . A ATP 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc9 D NA NA . A NA 402 1_555 E O3B ATP . A ATP 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc10 B OD2 ASP 118 B ASP 118 1_555 O MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc11 B O THR 148 B THR 148 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc12 B OG1 THR 186 B THR 186 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc13 BA O HOH . B HOH 383 1_555 O MG MG . B MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc14 BA O HOH . B HOH 385 1_555 P NA NA . B NA 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc15 O MG MG . B MG 404 1_555 Q O2A ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc16 O MG MG . B MG 404 1_555 Q O1B ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc17 P NA NA . B NA 406 1_555 Q O3B ATP . B ATP 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3FHX _atom_sites.fract_transf_matrix[1][1] 0.010962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 400 400 MG MG . D 3 NA A 1 402 402 NA NA . E 4 ATP A 1 407 407 ATP ATP . F 5 PXL A 1 313 1 PXL PXL . G 6 SO4 A 1 314 7 SO4 SO4 . H 6 SO4 A 1 315 9 SO4 SO4 . I 6 SO4 A 1 316 13 SO4 SO4 . J 6 SO4 A 1 317 15 SO4 SO4 . K 6 SO4 A 1 318 21 SO4 SO4 . L 6 SO4 A 1 319 23 SO4 SO4 . M 6 SO4 A 1 320 25 SO4 SO4 . N 7 MPD A 1 321 35 MPD MPD . O 2 MG B 1 404 404 MG MG . P 3 NA B 1 406 406 NA NA . Q 4 ATP B 1 409 409 ATP ATP . R 5 PXL B 1 313 3 PXL PXL . S 8 PLP B 1 314 5 PLP PLP . T 6 SO4 B 1 315 11 SO4 SO4 . U 6 SO4 B 1 316 17 SO4 SO4 . V 6 SO4 B 1 317 19 SO4 SO4 . W 6 SO4 B 1 318 27 SO4 SO4 . X 7 MPD B 1 319 29 MPD MPD . Y 7 MPD B 1 320 31 MPD MPD . Z 7 MPD B 1 321 33 MPD MPD . AA 9 HOH A 1 322 2 HOH HOH . AA 9 HOH A 2 323 3 HOH HOH . AA 9 HOH A 3 324 4 HOH HOH . AA 9 HOH A 4 325 5 HOH HOH . AA 9 HOH A 5 326 6 HOH HOH . AA 9 HOH A 6 327 7 HOH HOH . AA 9 HOH A 7 328 8 HOH HOH . AA 9 HOH A 8 329 9 HOH HOH . AA 9 HOH A 9 330 12 HOH HOH . AA 9 HOH A 10 331 13 HOH HOH . AA 9 HOH A 11 332 17 HOH HOH . AA 9 HOH A 12 333 18 HOH HOH . AA 9 HOH A 13 334 19 HOH HOH . AA 9 HOH A 14 335 20 HOH HOH . AA 9 HOH A 15 336 21 HOH HOH . AA 9 HOH A 16 337 22 HOH HOH . AA 9 HOH A 17 338 23 HOH HOH . AA 9 HOH A 18 339 26 HOH HOH . AA 9 HOH A 19 340 30 HOH HOH . AA 9 HOH A 20 341 44 HOH HOH . AA 9 HOH A 21 342 45 HOH HOH . AA 9 HOH A 22 343 46 HOH HOH . AA 9 HOH A 23 344 49 HOH HOH . AA 9 HOH A 24 345 50 HOH HOH . AA 9 HOH A 25 346 52 HOH HOH . AA 9 HOH A 26 347 53 HOH HOH . AA 9 HOH A 27 348 54 HOH HOH . AA 9 HOH A 28 349 55 HOH HOH . AA 9 HOH A 29 350 56 HOH HOH . AA 9 HOH A 30 351 57 HOH HOH . AA 9 HOH A 31 352 58 HOH HOH . AA 9 HOH A 32 353 66 HOH HOH . AA 9 HOH A 33 354 67 HOH HOH . AA 9 HOH A 34 355 68 HOH HOH . AA 9 HOH A 35 356 69 HOH HOH . AA 9 HOH A 36 357 70 HOH HOH . AA 9 HOH A 37 358 71 HOH HOH . AA 9 HOH A 38 359 73 HOH HOH . AA 9 HOH A 39 360 74 HOH HOH . AA 9 HOH A 40 361 76 HOH HOH . AA 9 HOH A 41 362 77 HOH HOH . AA 9 HOH A 42 363 78 HOH HOH . AA 9 HOH A 43 364 79 HOH HOH . AA 9 HOH A 44 365 80 HOH HOH . AA 9 HOH A 45 366 81 HOH HOH . AA 9 HOH A 46 367 83 HOH HOH . AA 9 HOH A 47 368 85 HOH HOH . AA 9 HOH A 48 369 86 HOH HOH . AA 9 HOH A 49 370 87 HOH HOH . AA 9 HOH A 50 371 88 HOH HOH . AA 9 HOH A 51 372 89 HOH HOH . AA 9 HOH A 52 373 90 HOH HOH . AA 9 HOH A 53 374 91 HOH HOH . AA 9 HOH A 54 375 92 HOH HOH . AA 9 HOH A 55 376 93 HOH HOH . AA 9 HOH A 56 377 94 HOH HOH . AA 9 HOH A 57 378 95 HOH HOH . AA 9 HOH A 58 379 96 HOH HOH . AA 9 HOH A 59 380 97 HOH HOH . AA 9 HOH A 60 381 114 HOH HOH . AA 9 HOH A 61 382 116 HOH HOH . AA 9 HOH A 62 383 121 HOH HOH . AA 9 HOH A 63 384 123 HOH HOH . AA 9 HOH A 64 385 124 HOH HOH . AA 9 HOH A 65 386 125 HOH HOH . AA 9 HOH A 66 387 126 HOH HOH . AA 9 HOH A 67 388 127 HOH HOH . AA 9 HOH A 68 389 129 HOH HOH . AA 9 HOH A 69 390 130 HOH HOH . AA 9 HOH A 70 391 134 HOH HOH . AA 9 HOH A 71 392 135 HOH HOH . BA 9 HOH B 1 322 1 HOH HOH . BA 9 HOH B 2 323 10 HOH HOH . BA 9 HOH B 3 324 11 HOH HOH . BA 9 HOH B 4 325 14 HOH HOH . BA 9 HOH B 5 326 15 HOH HOH . BA 9 HOH B 6 327 16 HOH HOH . BA 9 HOH B 7 328 24 HOH HOH . BA 9 HOH B 8 329 25 HOH HOH . BA 9 HOH B 9 330 27 HOH HOH . BA 9 HOH B 10 331 28 HOH HOH . BA 9 HOH B 11 332 29 HOH HOH . BA 9 HOH B 12 333 31 HOH HOH . BA 9 HOH B 13 334 32 HOH HOH . BA 9 HOH B 14 335 33 HOH HOH . BA 9 HOH B 15 336 34 HOH HOH . BA 9 HOH B 16 337 35 HOH HOH . BA 9 HOH B 17 338 36 HOH HOH . BA 9 HOH B 18 339 37 HOH HOH . BA 9 HOH B 19 340 38 HOH HOH . BA 9 HOH B 20 341 39 HOH HOH . BA 9 HOH B 21 342 40 HOH HOH . BA 9 HOH B 22 343 41 HOH HOH . BA 9 HOH B 23 344 42 HOH HOH . BA 9 HOH B 24 345 43 HOH HOH . BA 9 HOH B 25 346 47 HOH HOH . BA 9 HOH B 26 347 48 HOH HOH . BA 9 HOH B 27 348 51 HOH HOH . BA 9 HOH B 28 349 59 HOH HOH . BA 9 HOH B 29 350 60 HOH HOH . BA 9 HOH B 30 351 61 HOH HOH . BA 9 HOH B 31 352 62 HOH HOH . BA 9 HOH B 32 353 63 HOH HOH . BA 9 HOH B 33 354 64 HOH HOH . BA 9 HOH B 34 355 65 HOH HOH . BA 9 HOH B 35 356 72 HOH HOH . BA 9 HOH B 36 357 75 HOH HOH . BA 9 HOH B 37 358 82 HOH HOH . BA 9 HOH B 38 359 84 HOH HOH . BA 9 HOH B 39 360 98 HOH HOH . BA 9 HOH B 40 361 99 HOH HOH . BA 9 HOH B 41 362 100 HOH HOH . BA 9 HOH B 42 363 101 HOH HOH . BA 9 HOH B 43 364 102 HOH HOH . BA 9 HOH B 44 365 103 HOH HOH . BA 9 HOH B 45 366 104 HOH HOH . BA 9 HOH B 46 367 105 HOH HOH . BA 9 HOH B 47 368 106 HOH HOH . BA 9 HOH B 48 369 107 HOH HOH . BA 9 HOH B 49 370 108 HOH HOH . BA 9 HOH B 50 371 109 HOH HOH . BA 9 HOH B 51 372 110 HOH HOH . BA 9 HOH B 52 373 111 HOH HOH . BA 9 HOH B 53 374 112 HOH HOH . BA 9 HOH B 54 375 113 HOH HOH . BA 9 HOH B 55 376 115 HOH HOH . BA 9 HOH B 56 377 117 HOH HOH . BA 9 HOH B 57 378 118 HOH HOH . BA 9 HOH B 58 379 119 HOH HOH . BA 9 HOH B 59 380 120 HOH HOH . BA 9 HOH B 60 381 122 HOH HOH . BA 9 HOH B 61 382 128 HOH HOH . BA 9 HOH B 62 383 131 HOH HOH . BA 9 HOH B 63 384 132 HOH HOH . BA 9 HOH B 64 385 133 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id P _atom_site.label_entity_id 3 _atom_site.Cartn_x 7.325 _atom_site.Cartn_y 26.988 _atom_site.Cartn_z 19.651 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.51 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 406 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #