data_3FIT
#
_model_server_result.job_id            FTiDW-r9IaGvRnigyn3hSQ 
_model_server_result.datetime_utc      '2024-11-26 20:20:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fit 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":400}' 
#
_entry.id    3FIT 
#
_exptl.entry_id    3FIT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3FIT 
_cell.length_a            50.6 
_cell.length_b            50.6 
_cell.length_c            268 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FIT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 44.666667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 81 A SER 81 1_555 A N MSE 82 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale2 A C MSE 82 A MSE 82 1_555 A N GLN 83 A GLN 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 A C GLU 134 A GLU 134 1_555 A N MSE 135 A MSE 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C MSE 135 A MSE 135 1_555 A N ALA 136 A ALA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     3FIT 
_atom_sites.fract_transf_matrix[1][1]    0.019763 
_atom_sites.fract_transf_matrix[1][2]    0.01141 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.02282 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003731 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FRU A 1 500 500 FRU FRU . 
C 3 SO4 A 1 300 300 SO4 SO4 . 
D 3 SO4 A 1 301 301 SO4 SO4 . 
E 4 AMP A 1 400 400 AMP A . 
F 5 HOH A 1 501 1 HOH HOH . 
F 5 HOH A 2 502 2 HOH HOH . 
F 5 HOH A 3 503 3 HOH HOH . 
F 5 HOH A 4 504 4 HOH HOH . 
F 5 HOH A 5 505 5 HOH HOH . 
F 5 HOH A 6 506 6 HOH HOH . 
F 5 HOH A 7 507 7 HOH HOH . 
F 5 HOH A 8 508 8 HOH HOH . 
F 5 HOH A 9 509 9 HOH HOH . 
F 5 HOH A 10 510 10 HOH HOH . 
F 5 HOH A 11 511 11 HOH HOH . 
F 5 HOH A 12 512 12 HOH HOH . 
F 5 HOH A 13 513 13 HOH HOH . 
F 5 HOH A 14 514 14 HOH HOH . 
F 5 HOH A 15 515 15 HOH HOH . 
F 5 HOH A 16 516 16 HOH HOH . 
F 5 HOH A 17 517 17 HOH HOH . 
F 5 HOH A 18 518 18 HOH HOH . 
F 5 HOH A 19 519 19 HOH HOH . 
F 5 HOH A 20 520 20 HOH HOH . 
F 5 HOH A 21 521 21 HOH HOH . 
F 5 HOH A 22 522 22 HOH HOH . 
F 5 HOH A 23 523 23 HOH HOH . 
F 5 HOH A 24 524 24 HOH HOH . 
F 5 HOH A 25 525 25 HOH HOH . 
F 5 HOH A 26 526 26 HOH HOH . 
F 5 HOH A 27 527 27 HOH HOH . 
F 5 HOH A 28 528 28 HOH HOH . 
F 5 HOH A 29 529 29 HOH HOH . 
F 5 HOH A 30 530 30 HOH HOH . 
F 5 HOH A 31 531 31 HOH HOH . 
F 5 HOH A 32 532 32 HOH HOH . 
F 5 HOH A 33 533 33 HOH HOH . 
F 5 HOH A 34 534 34 HOH HOH . 
F 5 HOH A 35 535 35 HOH HOH . 
F 5 HOH A 36 536 36 HOH HOH . 
F 5 HOH A 37 537 37 HOH HOH . 
F 5 HOH A 38 538 38 HOH HOH . 
F 5 HOH A 39 539 39 HOH HOH . 
F 5 HOH A 40 540 40 HOH HOH . 
F 5 HOH A 41 541 41 HOH HOH . 
F 5 HOH A 42 542 43 HOH HOH . 
F 5 HOH A 43 543 44 HOH HOH . 
F 5 HOH A 44 544 45 HOH HOH . 
F 5 HOH A 45 545 46 HOH HOH . 
F 5 HOH A 46 546 47 HOH HOH . 
F 5 HOH A 47 547 48 HOH HOH . 
F 5 HOH A 48 548 49 HOH HOH . 
F 5 HOH A 49 549 50 HOH HOH . 
F 5 HOH A 50 550 51 HOH HOH . 
F 5 HOH A 51 551 52 HOH HOH . 
F 5 HOH A 52 552 53 HOH HOH . 
F 5 HOH A 53 553 54 HOH HOH . 
F 5 HOH A 54 554 55 HOH HOH . 
F 5 HOH A 55 555 56 HOH HOH . 
F 5 HOH A 56 556 57 HOH HOH . 
F 5 HOH A 57 557 59 HOH HOH . 
F 5 HOH A 58 558 60 HOH HOH . 
F 5 HOH A 59 559 61 HOH HOH . 
F 5 HOH A 60 560 62 HOH HOH . 
F 5 HOH A 61 561 65 HOH HOH . 
F 5 HOH A 62 562 66 HOH HOH . 
F 5 HOH A 63 563 67 HOH HOH . 
F 5 HOH A 64 564 69 HOH HOH . 
F 5 HOH A 65 565 70 HOH HOH . 
F 5 HOH A 66 566 71 HOH HOH . 
F 5 HOH A 67 567 72 HOH HOH . 
F 5 HOH A 68 568 73 HOH HOH . 
F 5 HOH A 69 569 75 HOH HOH . 
F 5 HOH A 70 570 76 HOH HOH . 
F 5 HOH A 71 571 77 HOH HOH . 
F 5 HOH A 72 572 78 HOH HOH . 
F 5 HOH A 73 573 79 HOH HOH . 
F 5 HOH A 74 574 80 HOH HOH . 
F 5 HOH A 75 575 81 HOH HOH . 
F 5 HOH A 76 576 82 HOH HOH . 
F 5 HOH A 77 577 83 HOH HOH . 
F 5 HOH A 78 578 85 HOH HOH . 
F 5 HOH A 79 579 88 HOH HOH . 
F 5 HOH A 80 580 90 HOH HOH . 
F 5 HOH A 81 581 92 HOH HOH . 
F 5 HOH A 82 582 93 HOH HOH . 
F 5 HOH A 83 583 95 HOH HOH . 
F 5 HOH A 84 584 100 HOH HOH . 
F 5 HOH A 85 585 101 HOH HOH . 
F 5 HOH A 86 586 102 HOH HOH . 
F 5 HOH A 87 587 104 HOH HOH . 
F 5 HOH A 88 588 105 HOH HOH . 
F 5 HOH A 89 589 107 HOH HOH . 
F 5 HOH A 90 590 109 HOH HOH . 
F 5 HOH A 91 591 111 HOH HOH . 
F 5 HOH A 92 592 112 HOH HOH . 
F 5 HOH A 93 593 113 HOH HOH . 
F 5 HOH A 94 594 114 HOH HOH . 
F 5 HOH A 95 595 115 HOH HOH . 
F 5 HOH A 96 596 116 HOH HOH . 
F 5 HOH A 97 597 117 HOH HOH . 
F 5 HOH A 98 598 118 HOH HOH . 
F 5 HOH A 99 599 119 HOH HOH . 
F 5 HOH A 100 600 120 HOH HOH . 
F 5 HOH A 101 601 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' AMP . . . E 4 7.344 19.812 22.897 0.38 42.87 ? O5' AMP 400 A 1 
HETATM 2 C C5' AMP . . . E 4 8.318 20.669 23.491 0.38 41.76 ? C5' AMP 400 A 1 
HETATM 3 C C4' AMP . . . E 4 8.607 20.248 24.929 0.38 39.68 ? C4' AMP 400 A 1 
HETATM 4 O O4' AMP . . . E 4 8.975 21.415 25.672 0.38 39.67 ? O4' AMP 400 A 1 
HETATM 5 C C3' AMP . . . E 4 7.359 19.636 25.572 0.38 39.19 ? C3' AMP 400 A 1 
HETATM 6 O O3' AMP . . . E 4 8.045 18.916 26.609 0.38 35.3 ? O3' AMP 400 A 1 
HETATM 7 C C2' AMP . . . E 4 6.725 21.006 25.798 0.38 41.44 ? C2' AMP 400 A 1 
HETATM 8 O O2' AMP . . . E 4 5.632 20.907 26.727 0.38 46.27 ? O2' AMP 400 A 1 
HETATM 9 C C1' AMP . . . E 4 7.831 21.858 26.412 0.38 39.02 ? C1' AMP 400 A 1 
HETATM 10 N N9 AMP . . . E 4 7.702 23.306 26.139 0.38 37.65 ? N9 AMP 400 A 1 
HETATM 11 C C8 AMP . . . E 4 7.352 23.96 24.976 0.38 39.21 ? C8 AMP 400 A 1 
HETATM 12 N N7 AMP . . . E 4 7.313 25.263 25.046 0.38 38.67 ? N7 AMP 400 A 1 
HETATM 13 C C5 AMP . . . E 4 7.688 25.494 26.367 0.38 37.85 ? C5 AMP 400 A 1 
HETATM 14 C C6 AMP . . . E 4 7.78 26.7 27.062 0.38 38.99 ? C6 AMP 400 A 1 
HETATM 15 N N6 AMP . . . E 4 7.563 27.863 26.462 0.38 39.49 ? N6 AMP 400 A 1 
HETATM 16 N N1 AMP . . . E 4 8.108 26.557 28.351 0.38 39.8 ? N1 AMP 400 A 1 
HETATM 17 C C2 AMP . . . E 4 8.325 25.373 28.925 0.38 36.66 ? C2 AMP 400 A 1 
HETATM 18 N N3 AMP . . . E 4 8.259 24.167 28.362 0.38 34.53 ? N3 AMP 400 A 1 
HETATM 19 C C4 AMP . . . E 4 7.931 24.321 27.048 0.38 37.21 ? C4 AMP 400 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           19 
#