data_3FIX # _model_server_result.job_id tS5d2Cdykw9DW_OtMdW46w _model_server_result.datetime_utc '2025-03-09 02:12:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fix # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":160}' # _entry.id 3FIX # _exptl.entry_id 3FIX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 101.19 _cell.angle_beta 90.1 _cell.angle_gamma 89.97 _cell.entry_id 3FIX _cell.length_a 42.229 _cell.length_b 60.915 _cell.length_c 72.116 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 PISA monomeric 1 software_defined_assembly 4 ? dimeric 2 author_defined_assembly 5 ? dimeric 2 author_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,G 1 1 B,H 2 1 C,F,I 3 1 D,J 4 1 A,B,E,G,H 5 1 C,D,F,I,J 6 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 24 A ALA 0 1_555 A N MSE 25 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 25 A MSE 1 1_555 A N SER 26 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C ILE 138 A ILE 114 1_555 A N MSE 139 A MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 139 A MSE 115 1_555 A N LYS 140 A LYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C ILE 178 A ILE 154 1_555 A N MSE 179 A MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale6 A C MSE 179 A MSE 155 1_555 A N GLU 180 A GLU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 B C ILE 138 B ILE 114 1_555 B N MSE 139 B MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 B C MSE 139 B MSE 115 1_555 B N LYS 140 B LYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 B C ILE 178 B ILE 154 1_555 B N MSE 179 B MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale10 B C MSE 179 B MSE 155 1_555 B N GLU 180 B GLU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 C C ALA 24 C ALA 0 1_555 C N MSE 25 C MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale12 C C MSE 25 C MSE 1 1_555 C N SER 26 C SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale13 C C ILE 138 C ILE 114 1_555 C N MSE 139 C MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 C C MSE 139 C MSE 115 1_555 C N LYS 140 C LYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale15 C C ILE 178 C ILE 154 1_555 C N MSE 179 C MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.297 ? covale ? covale16 C C MSE 179 C MSE 155 1_555 C N GLU 180 C GLU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale17 D C ILE 138 D ILE 114 1_555 D N MSE 139 D MSE 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale18 D C MSE 139 D MSE 115 1_555 D N LYS 140 D LYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale19 D C ILE 178 D ILE 154 1_555 D N MSE 179 D MSE 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale20 D C MSE 179 D MSE 155 1_555 D N GLU 180 D GLU 156 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3FIX _atom_sites.fract_transf_matrix[1][1] 0.02368 _atom_sites.fract_transf_matrix[1][2] -0.00001 _atom_sites.fract_transf_matrix[1][3] 0.000041 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016416 _atom_sites.fract_transf_matrix[2][3] 0.003248 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO A 1 160 1 EDO EDO . F 2 EDO C 1 160 2 EDO EDO . G 3 HOH A 1 161 10 HOH HOH . G 3 HOH A 2 162 11 HOH HOH . G 3 HOH A 3 163 12 HOH HOH . G 3 HOH A 4 164 13 HOH HOH . G 3 HOH A 5 165 14 HOH HOH . G 3 HOH A 6 166 15 HOH HOH . G 3 HOH A 7 167 35 HOH HOH . G 3 HOH A 8 168 37 HOH HOH . G 3 HOH A 9 169 41 HOH HOH . H 3 HOH B 1 160 3 HOH HOH . H 3 HOH B 2 161 4 HOH HOH . H 3 HOH B 3 162 5 HOH HOH . H 3 HOH B 4 163 6 HOH HOH . H 3 HOH B 5 164 7 HOH HOH . H 3 HOH B 6 165 8 HOH HOH . H 3 HOH B 7 166 9 HOH HOH . H 3 HOH B 8 167 16 HOH HOH . H 3 HOH B 9 168 17 HOH HOH . H 3 HOH B 10 169 18 HOH HOH . H 3 HOH B 11 170 36 HOH HOH . I 3 HOH C 1 161 19 HOH HOH . I 3 HOH C 2 162 24 HOH HOH . I 3 HOH C 3 163 25 HOH HOH . I 3 HOH C 4 164 26 HOH HOH . I 3 HOH C 5 165 27 HOH HOH . I 3 HOH C 6 166 28 HOH HOH . I 3 HOH C 7 167 29 HOH HOH . I 3 HOH C 8 168 34 HOH HOH . I 3 HOH C 9 169 38 HOH HOH . I 3 HOH C 10 170 39 HOH HOH . J 3 HOH D 1 160 20 HOH HOH . J 3 HOH D 2 161 21 HOH HOH . J 3 HOH D 3 162 22 HOH HOH . J 3 HOH D 4 163 23 HOH HOH . J 3 HOH D 5 164 30 HOH HOH . J 3 HOH D 6 165 31 HOH HOH . J 3 HOH D 7 166 32 HOH HOH . J 3 HOH D 8 167 33 HOH HOH . J 3 HOH D 9 168 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 2 -33.211 -54.898 -2.572 1 75.31 ? C1 EDO 160 C 1 HETATM 2 O O1 EDO . . . F 2 -32.101 -54.672 -1.677 1 68.57 ? O1 EDO 160 C 1 HETATM 3 C C2 EDO . . . F 2 -32.831 -54.577 -4.038 1 77.43 ? C2 EDO 160 C 1 HETATM 4 O O2 EDO . . . F 2 -33.818 -53.728 -4.666 1 77.28 ? O2 EDO 160 C 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #