data_3FJ2 # _model_server_result.job_id Fwrg3Zy7l5kYdpHjiEdlOg _model_server_result.datetime_utc '2024-12-22 06:05:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fj2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":168}' # _entry.id 3FJ2 # _exptl.entry_id 3FJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FJ2 _cell.length_a 72.944 _cell.length_b 72.944 _cell.length_c 213.691 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 19 A GLY 0 1_555 A N MSE 20 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 20 A MSE 1 1_555 A N LYS 21 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale3 A C LEU 36 A LEU 17 1_555 A N MSE 37 A MSE 18 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C LEU 36 A LEU 17 1_555 A N MSE 37 A MSE 18 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C MSE 37 A MSE 18 1_555 A N GLU 38 A GLU 19 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 37 A MSE 18 1_555 A N GLU 38 A GLU 19 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C GLN 104 A GLN 85 1_555 A N MSE 105 A MSE 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 A C MSE 105 A MSE 86 1_555 A N TYR 106 A TYR 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale9 A C ALA 127 A ALA 108 1_555 A N MSE 128 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale10 A C MSE 128 A MSE 109 1_555 A N ASN 129 A ASN 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 A C ILE 160 A ILE 141 1_555 A N MSE 161 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 A C MSE 161 A MSE 142 1_555 A N LYS 162 A LYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3FJ2 _atom_sites.fract_transf_matrix[1][1] 0.013709 _atom_sites.fract_transf_matrix[1][2] 0.007915 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01583 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 168 1 GOL GOL . C 2 GOL A 1 169 2 GOL GOL . D 2 GOL A 1 170 3 GOL GOL . E 2 GOL A 1 171 4 GOL GOL . F 3 HOH A 1 172 172 HOH HOH . F 3 HOH A 2 173 173 HOH HOH . F 3 HOH A 3 174 174 HOH HOH . F 3 HOH A 4 175 175 HOH HOH . F 3 HOH A 5 176 176 HOH HOH . F 3 HOH A 6 177 177 HOH HOH . F 3 HOH A 7 178 178 HOH HOH . F 3 HOH A 8 179 179 HOH HOH . F 3 HOH A 9 180 180 HOH HOH . F 3 HOH A 10 181 181 HOH HOH . F 3 HOH A 11 182 182 HOH HOH . F 3 HOH A 12 183 183 HOH HOH . F 3 HOH A 13 184 184 HOH HOH . F 3 HOH A 14 185 185 HOH HOH . F 3 HOH A 15 186 186 HOH HOH . F 3 HOH A 16 187 187 HOH HOH . F 3 HOH A 17 188 5 HOH HOH . F 3 HOH A 18 189 6 HOH HOH . F 3 HOH A 19 190 7 HOH HOH . F 3 HOH A 20 191 8 HOH HOH . F 3 HOH A 21 192 9 HOH HOH . F 3 HOH A 22 193 10 HOH HOH . F 3 HOH A 23 194 11 HOH HOH . F 3 HOH A 24 195 12 HOH HOH . F 3 HOH A 25 196 13 HOH HOH . F 3 HOH A 26 197 14 HOH HOH . F 3 HOH A 27 198 15 HOH HOH . F 3 HOH A 28 199 16 HOH HOH . F 3 HOH A 29 200 17 HOH HOH . F 3 HOH A 30 201 18 HOH HOH . F 3 HOH A 31 202 19 HOH HOH . F 3 HOH A 32 203 20 HOH HOH . F 3 HOH A 33 204 21 HOH HOH . F 3 HOH A 34 205 22 HOH HOH . F 3 HOH A 35 206 23 HOH HOH . F 3 HOH A 36 207 24 HOH HOH . F 3 HOH A 37 208 25 HOH HOH . F 3 HOH A 38 209 26 HOH HOH . F 3 HOH A 39 210 27 HOH HOH . F 3 HOH A 40 211 28 HOH HOH . F 3 HOH A 41 212 29 HOH HOH . F 3 HOH A 42 213 30 HOH HOH . F 3 HOH A 43 214 31 HOH HOH . F 3 HOH A 44 215 32 HOH HOH . F 3 HOH A 45 216 33 HOH HOH . F 3 HOH A 46 217 34 HOH HOH . F 3 HOH A 47 218 35 HOH HOH . F 3 HOH A 48 219 36 HOH HOH . F 3 HOH A 49 220 37 HOH HOH . F 3 HOH A 50 221 38 HOH HOH . F 3 HOH A 51 222 39 HOH HOH . F 3 HOH A 52 223 40 HOH HOH . F 3 HOH A 53 224 41 HOH HOH . F 3 HOH A 54 225 42 HOH HOH . F 3 HOH A 55 226 43 HOH HOH . F 3 HOH A 56 227 44 HOH HOH . F 3 HOH A 57 228 45 HOH HOH . F 3 HOH A 58 229 46 HOH HOH . F 3 HOH A 59 230 47 HOH HOH . F 3 HOH A 60 231 48 HOH HOH . F 3 HOH A 61 232 49 HOH HOH . F 3 HOH A 62 233 50 HOH HOH . F 3 HOH A 63 234 51 HOH HOH . F 3 HOH A 64 235 52 HOH HOH . F 3 HOH A 65 236 53 HOH HOH . F 3 HOH A 66 237 54 HOH HOH . F 3 HOH A 67 238 55 HOH HOH . F 3 HOH A 68 239 56 HOH HOH . F 3 HOH A 69 240 57 HOH HOH . F 3 HOH A 70 241 58 HOH HOH . F 3 HOH A 71 242 59 HOH HOH . F 3 HOH A 72 243 60 HOH HOH . F 3 HOH A 73 244 61 HOH HOH . F 3 HOH A 74 245 62 HOH HOH . F 3 HOH A 75 246 63 HOH HOH . F 3 HOH A 76 247 64 HOH HOH . F 3 HOH A 77 248 65 HOH HOH . F 3 HOH A 78 249 66 HOH HOH . F 3 HOH A 79 250 67 HOH HOH . F 3 HOH A 80 251 68 HOH HOH . F 3 HOH A 81 252 69 HOH HOH . F 3 HOH A 82 253 70 HOH HOH . F 3 HOH A 83 254 71 HOH HOH . F 3 HOH A 84 255 72 HOH HOH . F 3 HOH A 85 256 73 HOH HOH . F 3 HOH A 86 257 74 HOH HOH . F 3 HOH A 87 258 75 HOH HOH . F 3 HOH A 88 259 76 HOH HOH . F 3 HOH A 89 260 77 HOH HOH . F 3 HOH A 90 261 78 HOH HOH . F 3 HOH A 91 262 79 HOH HOH . F 3 HOH A 92 263 80 HOH HOH . F 3 HOH A 93 264 81 HOH HOH . F 3 HOH A 94 265 82 HOH HOH . F 3 HOH A 95 266 83 HOH HOH . F 3 HOH A 96 267 84 HOH HOH . F 3 HOH A 97 268 85 HOH HOH . F 3 HOH A 98 269 86 HOH HOH . F 3 HOH A 99 270 87 HOH HOH . F 3 HOH A 100 271 88 HOH HOH . F 3 HOH A 101 272 89 HOH HOH . F 3 HOH A 102 273 90 HOH HOH . F 3 HOH A 103 274 91 HOH HOH . F 3 HOH A 104 275 92 HOH HOH . F 3 HOH A 105 276 93 HOH HOH . F 3 HOH A 106 277 94 HOH HOH . F 3 HOH A 107 278 95 HOH HOH . F 3 HOH A 108 279 96 HOH HOH . F 3 HOH A 109 280 97 HOH HOH . F 3 HOH A 110 281 98 HOH HOH . F 3 HOH A 111 282 99 HOH HOH . F 3 HOH A 112 283 100 HOH HOH . F 3 HOH A 113 284 101 HOH HOH . F 3 HOH A 114 285 102 HOH HOH . F 3 HOH A 115 286 103 HOH HOH . F 3 HOH A 116 287 104 HOH HOH . F 3 HOH A 117 288 105 HOH HOH . F 3 HOH A 118 289 106 HOH HOH . F 3 HOH A 119 290 107 HOH HOH . F 3 HOH A 120 291 108 HOH HOH . F 3 HOH A 121 292 109 HOH HOH . F 3 HOH A 122 293 110 HOH HOH . F 3 HOH A 123 294 111 HOH HOH . F 3 HOH A 124 295 112 HOH HOH . F 3 HOH A 125 296 113 HOH HOH . F 3 HOH A 126 297 114 HOH HOH . F 3 HOH A 127 298 115 HOH HOH . F 3 HOH A 128 299 116 HOH HOH . F 3 HOH A 129 300 117 HOH HOH . F 3 HOH A 130 301 118 HOH HOH . F 3 HOH A 131 302 119 HOH HOH . F 3 HOH A 132 303 120 HOH HOH . F 3 HOH A 133 304 121 HOH HOH . F 3 HOH A 134 305 122 HOH HOH . F 3 HOH A 135 306 123 HOH HOH . F 3 HOH A 136 307 124 HOH HOH . F 3 HOH A 137 308 125 HOH HOH . F 3 HOH A 138 309 126 HOH HOH . F 3 HOH A 139 310 127 HOH HOH . F 3 HOH A 140 311 128 HOH HOH . F 3 HOH A 141 312 129 HOH HOH . F 3 HOH A 142 313 130 HOH HOH . F 3 HOH A 143 314 131 HOH HOH . F 3 HOH A 144 315 132 HOH HOH . F 3 HOH A 145 316 133 HOH HOH . F 3 HOH A 146 317 134 HOH HOH . F 3 HOH A 147 318 135 HOH HOH . F 3 HOH A 148 319 136 HOH HOH . F 3 HOH A 149 320 137 HOH HOH . F 3 HOH A 150 321 138 HOH HOH . F 3 HOH A 151 322 139 HOH HOH . F 3 HOH A 152 323 140 HOH HOH . F 3 HOH A 153 324 141 HOH HOH . F 3 HOH A 154 325 142 HOH HOH . F 3 HOH A 155 326 143 HOH HOH . F 3 HOH A 156 327 144 HOH HOH . F 3 HOH A 157 328 145 HOH HOH . F 3 HOH A 158 329 146 HOH HOH . F 3 HOH A 159 330 147 HOH HOH . F 3 HOH A 160 331 148 HOH HOH . F 3 HOH A 161 332 149 HOH HOH . F 3 HOH A 162 333 150 HOH HOH . F 3 HOH A 163 334 151 HOH HOH . F 3 HOH A 164 335 152 HOH HOH . F 3 HOH A 165 336 153 HOH HOH . F 3 HOH A 166 337 154 HOH HOH . F 3 HOH A 167 338 155 HOH HOH . F 3 HOH A 168 339 156 HOH HOH . F 3 HOH A 169 340 157 HOH HOH . F 3 HOH A 170 341 158 HOH HOH . F 3 HOH A 171 342 159 HOH HOH . F 3 HOH A 172 343 160 HOH HOH . F 3 HOH A 173 344 161 HOH HOH . F 3 HOH A 174 345 162 HOH HOH . F 3 HOH A 175 346 163 HOH HOH . F 3 HOH A 176 347 164 HOH HOH . F 3 HOH A 177 348 165 HOH HOH . F 3 HOH A 178 349 166 HOH HOH . F 3 HOH A 179 350 167 HOH HOH . F 3 HOH A 180 351 168 HOH HOH . F 3 HOH A 181 352 169 HOH HOH . F 3 HOH A 182 353 170 HOH HOH . F 3 HOH A 183 354 171 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 17.998 68.296 11.81 1 62.42 ? C1 GOL 168 A 1 HETATM 2 O O1 GOL . . . B 2 16.964 69.222 12.111 1 61.7 ? O1 GOL 168 A 1 HETATM 3 C C2 GOL . . . B 2 17.383 67.001 11.298 1 63.84 ? C2 GOL 168 A 1 HETATM 4 O O2 GOL . . . B 2 16.484 66.564 12.286 1 66.66 ? O2 GOL 168 A 1 HETATM 5 C C3 GOL . . . B 2 18.429 65.919 10.993 1 63.86 ? C3 GOL 168 A 1 HETATM 6 O O3 GOL . . . B 2 18.618 65.736 9.598 1 62.21 ? O3 GOL 168 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #