data_3FL7 # _model_server_result.job_id xDnaK8WqkhQt4QPyQYmcSA _model_server_result.datetime_utc '2024-11-04 20:37:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1005}' # _entry.id 3FL7 # _exptl.entry_id 3FL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FL7 _cell.length_a 59.358 _cell.length_b 89.992 _cell.length_c 136.476 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2 A,B,C,D,E,F,G 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 59.358 89.992 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 75 A CYS 70 1_555 A SG CYS 193 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 A SG CYS 110 A CYS 105 1_555 A SG CYS 120 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 206 A CYS 201 1_555 A SG CYS 252 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf4 A SG CYS 235 A CYS 230 1_555 A SG CYS 265 A CYS 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf5 A SG CYS 267 A CYS 262 1_555 A SG CYS 278 A CYS 273 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf6 A SG CYS 281 A CYS 276 1_555 A SG CYS 295 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf7 A SG CYS 298 A CYS 293 1_555 A SG CYS 312 A CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf8 A SG CYS 314 A CYS 309 1_555 A SG CYS 330 A CYS 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf9 A SG CYS 371 A CYS 366 1_555 A SG CYS 384 A CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf10 A SG CYS 374 A CYS 369 1_555 A SG CYS 381 A CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? covale ? covale1 A ND2 ASN 412 A ASN 407 1_555 F C1 NAG . A NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? metalc ? metalc1 A OD2 ASP 153 A ASP 148 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc2 A OE2 GLU 171 A GLU 166 1_555 B NA NA . A NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3FL7 _atom_sites.fract_transf_matrix[1][1] 0.016847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007327 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 1001 1002 NA NA . C 3 CL A 1 1002 1003 CL CL . D 3 CL A 1 1003 1004 CL CL . E 3 CL A 1 1004 1005 CL CL . F 4 NAG A 1 1005 1001 NAG NAG . G 5 HOH A 1 1006 1006 HOH HOH . G 5 HOH A 2 1007 1007 HOH HOH . G 5 HOH A 3 1008 1008 HOH HOH . G 5 HOH A 4 1009 1009 HOH HOH . G 5 HOH A 5 1010 1010 HOH HOH . G 5 HOH A 6 1011 1011 HOH HOH . G 5 HOH A 7 1012 1012 HOH HOH . G 5 HOH A 8 1013 1013 HOH HOH . G 5 HOH A 9 1014 1014 HOH HOH . G 5 HOH A 10 1015 1015 HOH HOH . G 5 HOH A 11 1016 1016 HOH HOH . G 5 HOH A 12 1017 1017 HOH HOH . G 5 HOH A 13 1018 1018 HOH HOH . G 5 HOH A 14 1019 1019 HOH HOH . G 5 HOH A 15 1020 1020 HOH HOH . G 5 HOH A 16 1021 1021 HOH HOH . G 5 HOH A 17 1022 1022 HOH HOH . G 5 HOH A 18 1023 1023 HOH HOH . G 5 HOH A 19 1024 1024 HOH HOH . G 5 HOH A 20 1025 1025 HOH HOH . G 5 HOH A 21 1026 1026 HOH HOH . G 5 HOH A 22 1027 1027 HOH HOH . G 5 HOH A 23 1028 1028 HOH HOH . G 5 HOH A 24 1029 1029 HOH HOH . G 5 HOH A 25 1030 1030 HOH HOH . G 5 HOH A 26 1031 1031 HOH HOH . G 5 HOH A 27 1032 1032 HOH HOH . G 5 HOH A 28 1033 1033 HOH HOH . G 5 HOH A 29 1034 1034 HOH HOH . G 5 HOH A 30 1035 1035 HOH HOH . G 5 HOH A 31 1036 1036 HOH HOH . G 5 HOH A 32 1037 1037 HOH HOH . G 5 HOH A 33 1038 1038 HOH HOH . G 5 HOH A 34 1039 1039 HOH HOH . G 5 HOH A 35 1040 1040 HOH HOH . G 5 HOH A 36 1041 1041 HOH HOH . G 5 HOH A 37 1042 1042 HOH HOH . G 5 HOH A 38 1043 1043 HOH HOH . G 5 HOH A 39 1044 1044 HOH HOH . G 5 HOH A 40 1045 1045 HOH HOH . G 5 HOH A 41 1046 1046 HOH HOH . G 5 HOH A 42 1047 1047 HOH HOH . G 5 HOH A 43 1048 1048 HOH HOH . G 5 HOH A 44 1049 1049 HOH HOH . G 5 HOH A 45 1050 1050 HOH HOH . G 5 HOH A 46 1051 1051 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 33.119 12.963 112.763 1 59.63 ? C1 NAG 1005 A 1 HETATM 2 C C2 NAG . . . F 4 32.231 12.38 111.613 1 61.82 ? C2 NAG 1005 A 1 HETATM 3 C C3 NAG . . . F 4 31.985 10.868 111.758 1 62.86 ? C3 NAG 1005 A 1 HETATM 4 C C4 NAG . . . F 4 33.334 10.191 111.929 1 63.84 ? C4 NAG 1005 A 1 HETATM 5 C C5 NAG . . . F 4 33.877 10.727 113.251 1 63.87 ? C5 NAG 1005 A 1 HETATM 6 C C6 NAG . . . F 4 35.131 10.032 113.764 1 64.48 ? C6 NAG 1005 A 1 HETATM 7 C C7 NAG . . . F 4 29.689 12.946 111.373 1 62.32 ? C7 NAG 1005 A 1 HETATM 8 C C8 NAG . . . F 4 28.788 14.158 111.365 1 61.45 ? C8 NAG 1005 A 1 HETATM 9 N N2 NAG . . . F 4 31.024 13.193 111.34 1 62.22 ? N2 NAG 1005 A 1 HETATM 10 O O3 NAG . . . F 4 31.323 10.273 110.656 1 62.62 ? O3 NAG 1005 A 1 HETATM 11 O O4 NAG . . . F 4 33.217 8.785 111.904 1 65.84 ? O4 NAG 1005 A 1 HETATM 12 O O5 NAG . . . F 4 34.204 12.087 113.027 1 62.06 ? O5 NAG 1005 A 1 HETATM 13 O O6 NAG . . . F 4 35.528 10.728 114.931 1 65.85 ? O6 NAG 1005 A 1 HETATM 14 O O7 NAG . . . F 4 29.163 11.831 111.408 1 62.61 ? O7 NAG 1005 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #