data_3FMR # _model_server_result.job_id QQJ-BZDH3qSodbkBNfKD7w _model_server_result.datetime_utc '2024-11-06 02:51:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fmr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":451}' # _entry.id 3FMR # _exptl.entry_id 3FMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 403.898 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R,2S,3S,4R)-4-hydroxy-2-methoxy-4-methyl-3-[(2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl]cyclohexyl (chloroacetyl)carbamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.33 _cell.angle_gamma 90 _cell.entry_id 3FMR _cell.length_a 61.977 _cell.length_b 94.067 _cell.length_c 66.407 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,M 1 1 B,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 109 A HIS 109 1_555 E C11 TN4 . A TN4 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 B NE2 HIS 109 B HIS 109 1_555 K C11 TN4 . B TN4 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A OD1 ASP 130 A ASP 130 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc2 A OD2 ASP 130 A ASP 130 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc3 A OD2 ASP 141 A ASP 141 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc4 A OD1 ASP 141 A ASP 141 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc5 A NE2 HIS 210 A HIS 210 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc6 A OE1 GLU 243 A GLU 243 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc7 A OE2 GLU 339 A GLU 339 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc8 A OE1 GLU 339 A GLU 339 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc9 B OD1 ASP 130 B ASP 130 1_555 J FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc10 B OD2 ASP 130 B ASP 130 1_555 J FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc11 B OD2 ASP 141 B ASP 141 1_555 I FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc12 B OD1 ASP 141 B ASP 141 1_555 J FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc13 B NE2 HIS 210 B HIS 210 1_555 I FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc14 B OE2 GLU 243 B GLU 243 1_555 I FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc15 B OE2 GLU 339 B GLU 339 1_555 I FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc16 B OE1 GLU 339 B GLU 339 1_555 J FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C19 H30 Cl N O6' _chem_comp.formula_weight 403.898 _chem_comp.id TN4 _chem_comp.mon_nstd_flag . _chem_comp.name '(1R,2S,3S,4R)-4-hydroxy-2-methoxy-4-methyl-3-[(2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl]cyclohexyl (chloroacetyl)carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TNP-470 (Open form)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C1 TN4 sing 310 n n C11 C1 TN4 sing 311 n n C1 C2 TN4 sing 312 n n C1 C6 TN4 sing 313 n n C21 C2 TN4 sing 314 n n C2 C3 TN4 sing 315 n n C2 H2 TN4 sing 316 n n C3 O31 TN4 sing 317 n n C3 C4 TN4 sing 318 n n C3 H3 TN4 sing 319 n n C4 C5 TN4 sing 320 n n C4 O41 TN4 sing 321 n n C4 H4 TN4 sing 322 n n C44 CL4 TN4 sing 323 n n C6 C5 TN4 sing 324 n n C5 H5 TN4 sing 325 n n C5 H5A TN4 sing 326 n n C6 H6 TN4 sing 327 n n C6 H6A TN4 sing 328 n n C11 H11 TN4 sing 329 n n C11 H11A TN4 sing 330 n n C11 H11B TN4 sing 331 n n O11 HO11 TN4 sing 332 n n C2A C21 TN4 sing 333 n n C22 C21 TN4 sing 334 n n C21 O2A TN4 sing 335 n n C23 C22 TN4 sing 336 n n C22 O2A TN4 sing 337 n n C22 H22 TN4 sing 338 n n C24 C23 TN4 sing 339 n n C23 H23 TN4 sing 340 n n C23 H23A TN4 sing 341 n n C25 C24 TN4 doub 342 n n C24 H24 TN4 sing 343 n n C2B C25 TN4 sing 344 n n C25 C2C TN4 sing 345 n n C2A H2A TN4 sing 346 n n C2A H2AA TN4 sing 347 n n C2A H2AB TN4 sing 348 n n C2B H2B TN4 sing 349 n n C2B H2BA TN4 sing 350 n n C2B H2BB TN4 sing 351 n n C2C H2C TN4 sing 352 n n C2C H2CA TN4 sing 353 n n C2C H2CB TN4 sing 354 n n O31 C31 TN4 sing 355 n n C31 H31 TN4 sing 356 n n C31 H31A TN4 sing 357 n n C31 H31B TN4 sing 358 n n O41 C41 TN4 sing 359 n n C41 O4A TN4 doub 360 n n C41 N42 TN4 sing 361 n n N42 C43 TN4 sing 362 n n N42 HN42 TN4 sing 363 n n C43 C44 TN4 sing 364 n n C43 O4B TN4 doub 365 n n C44 H44 TN4 sing 366 n n C44 H44A TN4 sing 367 n n # _atom_sites.entry_id 3FMR _atom_sites.fract_transf_matrix[1][1] 0.016135 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002651 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015261 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FE A 1 401 401 FE FE . D 2 FE A 1 402 402 FE FE . E 3 TN4 A 1 451 451 TN4 TN4 . F 4 SO4 A 1 501 501 SO4 SO4 . G 4 SO4 A 1 502 502 SO4 SO4 . H 4 SO4 A 1 503 503 SO4 SO4 . I 2 FE B 1 401 401 FE FE . J 2 FE B 1 402 402 FE FE . K 3 TN4 B 1 451 451 TN4 TN4 . L 4 SO4 B 1 504 504 SO4 SO4 . M 5 HOH A 1 504 504 HOH HOH . M 5 HOH A 2 505 505 HOH HOH . M 5 HOH A 3 506 506 HOH HOH . M 5 HOH A 4 507 507 HOH HOH . M 5 HOH A 5 508 508 HOH HOH . M 5 HOH A 6 509 509 HOH HOH . M 5 HOH A 7 510 510 HOH HOH . M 5 HOH A 8 511 511 HOH HOH . M 5 HOH A 9 512 512 HOH HOH . N 5 HOH B 1 505 505 HOH HOH . N 5 HOH B 2 506 506 HOH HOH . N 5 HOH B 3 507 507 HOH HOH . N 5 HOH B 4 508 508 HOH HOH . N 5 HOH B 5 509 509 HOH HOH . N 5 HOH B 6 510 510 HOH HOH . N 5 HOH B 7 511 511 HOH HOH . N 5 HOH B 8 512 512 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TN4 . . . E 3 14.97 -5.736 25.624 1 32.88 ? C1 TN4 451 A 1 HETATM 2 C C2 TN4 . . . E 3 14.862 -7.215 25.224 1 33.14 ? C2 TN4 451 A 1 HETATM 3 C C3 TN4 . . . E 3 14.299 -8.018 26.4 1 32.61 ? C3 TN4 451 A 1 HETATM 4 C C4 TN4 . . . E 3 12.809 -7.669 26.478 1 32.64 ? C4 TN4 451 A 1 HETATM 5 C C5 TN4 . . . E 3 12.561 -6.177 26.238 1 32.73 ? C5 TN4 451 A 1 HETATM 6 C C6 TN4 . . . E 3 13.773 -5.278 26.45 1 32.23 ? C6 TN4 451 A 1 HETATM 7 C C11 TN4 . . . E 3 15.131 -4.821 24.379 1 33.23 ? C11 TN4 451 A 1 HETATM 8 O O11 TN4 . . . E 3 16.075 -5.678 26.407 1 32.12 ? O11 TN4 451 A 1 HETATM 9 C C21 TN4 . . . E 3 16.255 -7.686 24.906 1 33.36 ? C21 TN4 451 A 1 HETATM 10 C C22 TN4 . . . E 3 16.518 -7.962 23.408 1 32.72 ? C22 TN4 451 A 1 HETATM 11 C C23 TN4 . . . E 3 17.943 -7.868 22.9 1 31.61 ? C23 TN4 451 A 1 HETATM 12 C C24 TN4 . . . E 3 18.542 -6.494 23.053 1 31.56 ? C24 TN4 451 A 1 HETATM 13 C C25 TN4 . . . E 3 18.636 -5.425 22.249 1 31.09 ? C25 TN4 451 A 1 HETATM 14 C C2A TN4 . . . E 3 17.323 -7.703 25.967 1 33.42 ? C2A TN4 451 A 1 HETATM 15 O O2A TN4 . . . E 3 16.223 -8.994 24.272 1 33.41 ? O2A TN4 451 A 1 HETATM 16 C C2B TN4 . . . E 3 19.3 -4.137 22.66 1 29.84 ? C2B TN4 451 A 1 HETATM 17 C C2C TN4 . . . E 3 18.07 -5.398 20.83 1 30.12 ? C2C TN4 451 A 1 HETATM 18 C C31 TN4 . . . E 3 14.08 -10.234 27.155 1 32.49 ? C31 TN4 451 A 1 HETATM 19 O O31 TN4 . . . E 3 14.427 -9.388 26.054 1 31.76 ? O31 TN4 451 A 1 HETATM 20 C C41 TN4 . . . E 3 11.153 -9.095 25.436 1 34.68 ? C41 TN4 451 A 1 HETATM 21 O O41 TN4 . . . E 3 12.216 -8.32 25.33 1 34.63 ? O41 TN4 451 A 1 HETATM 22 N N42 TN4 . . . E 3 10.785 -9.613 24.243 1 35.27 ? N42 TN4 451 A 1 HETATM 23 C C43 TN4 . . . E 3 9.763 -10.449 23.945 1 35.31 ? C43 TN4 451 A 1 HETATM 24 O O4A TN4 . . . E 3 10.659 -9.272 26.533 1 34.41 ? O4A TN4 451 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #