data_3FMR
#
_model_server_result.job_id            SW8bbBOqQR1eAZ8UFOKZcQ 
_model_server_result.datetime_utc      '2024-11-06 02:52:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fmr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":451}' 
#
_entry.id    3FMR 
#
_exptl.entry_id    3FMR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              403.898 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R,2S,3S,4R)-4-hydroxy-2-methoxy-4-methyl-3-[(2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl]cyclohexyl (chloroacetyl)carbamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.33 
_cell.angle_gamma         90 
_cell.entry_id            3FMR 
_cell.length_a            61.977 
_cell.length_b            94.067 
_cell.length_c            66.407 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FMR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,M 1 1 
B,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 109 A HIS 109 1_555 E C11 TN4 . A TN4 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale2 B NE2 HIS 109 B HIS 109 1_555 K C11 TN4 . B TN4 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
metalc ? metalc1 A OD1 ASP 130 A ASP 130 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc2 A OD2 ASP 130 A ASP 130 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc3 A OD2 ASP 141 A ASP 141 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc4 A OD1 ASP 141 A ASP 141 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc5 A NE2 HIS 210 A HIS 210 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc6 A OE1 GLU 243 A GLU 243 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc7 A OE2 GLU 339 A GLU 339 1_555 C FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc8 A OE1 GLU 339 A GLU 339 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc9 B OD1 ASP 130 B ASP 130 1_555 J FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc10 B OD2 ASP 130 B ASP 130 1_555 J FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? 
metalc ? metalc11 B OD2 ASP 141 B ASP 141 1_555 I FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc12 B OD1 ASP 141 B ASP 141 1_555 J FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
metalc ? metalc13 B NE2 HIS 210 B HIS 210 1_555 I FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc14 B OE2 GLU 243 B GLU 243 1_555 I FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc15 B OE2 GLU 339 B GLU 339 1_555 I FE FE . B FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc16 B OE1 GLU 339 B GLU 339 1_555 J FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
#
_chem_comp.formula           'C19 H30 Cl N O6' 
_chem_comp.formula_weight    403.898 
_chem_comp.id                TN4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R,2S,3S,4R)-4-hydroxy-2-methoxy-4-methyl-3-[(2R,3R)-2-methyl-3-(3-methylbut-2-en-1-yl)oxiran-2-yl]cyclohexyl (chloroacetyl)carbamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TNP-470 (Open form)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 C1 TN4 sing 310 n n 
C11 C1 TN4 sing 311 n n 
C1 C2 TN4 sing 312 n n 
C1 C6 TN4 sing 313 n n 
C21 C2 TN4 sing 314 n n 
C2 C3 TN4 sing 315 n n 
C2 H2 TN4 sing 316 n n 
C3 O31 TN4 sing 317 n n 
C3 C4 TN4 sing 318 n n 
C3 H3 TN4 sing 319 n n 
C4 C5 TN4 sing 320 n n 
C4 O41 TN4 sing 321 n n 
C4 H4 TN4 sing 322 n n 
C44 CL4 TN4 sing 323 n n 
C6 C5 TN4 sing 324 n n 
C5 H5 TN4 sing 325 n n 
C5 H5A TN4 sing 326 n n 
C6 H6 TN4 sing 327 n n 
C6 H6A TN4 sing 328 n n 
C11 H11 TN4 sing 329 n n 
C11 H11A TN4 sing 330 n n 
C11 H11B TN4 sing 331 n n 
O11 HO11 TN4 sing 332 n n 
C2A C21 TN4 sing 333 n n 
C22 C21 TN4 sing 334 n n 
C21 O2A TN4 sing 335 n n 
C23 C22 TN4 sing 336 n n 
C22 O2A TN4 sing 337 n n 
C22 H22 TN4 sing 338 n n 
C24 C23 TN4 sing 339 n n 
C23 H23 TN4 sing 340 n n 
C23 H23A TN4 sing 341 n n 
C25 C24 TN4 doub 342 n n 
C24 H24 TN4 sing 343 n n 
C2B C25 TN4 sing 344 n n 
C25 C2C TN4 sing 345 n n 
C2A H2A TN4 sing 346 n n 
C2A H2AA TN4 sing 347 n n 
C2A H2AB TN4 sing 348 n n 
C2B H2B TN4 sing 349 n n 
C2B H2BA TN4 sing 350 n n 
C2B H2BB TN4 sing 351 n n 
C2C H2C TN4 sing 352 n n 
C2C H2CA TN4 sing 353 n n 
C2C H2CB TN4 sing 354 n n 
O31 C31 TN4 sing 355 n n 
C31 H31 TN4 sing 356 n n 
C31 H31A TN4 sing 357 n n 
C31 H31B TN4 sing 358 n n 
O41 C41 TN4 sing 359 n n 
C41 O4A TN4 doub 360 n n 
C41 N42 TN4 sing 361 n n 
N42 C43 TN4 sing 362 n n 
N42 HN42 TN4 sing 363 n n 
C43 C44 TN4 sing 364 n n 
C43 O4B TN4 doub 365 n n 
C44 H44 TN4 sing 366 n n 
C44 H44A TN4 sing 367 n n 
#
_atom_sites.entry_id                     3FMR 
_atom_sites.fract_transf_matrix[1][1]    0.016135 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002651 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010631 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015261 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FE A 1 401 401 FE FE . 
D 2 FE A 1 402 402 FE FE . 
E 3 TN4 A 1 451 451 TN4 TN4 . 
F 4 SO4 A 1 501 501 SO4 SO4 . 
G 4 SO4 A 1 502 502 SO4 SO4 . 
H 4 SO4 A 1 503 503 SO4 SO4 . 
I 2 FE B 1 401 401 FE FE . 
J 2 FE B 1 402 402 FE FE . 
K 3 TN4 B 1 451 451 TN4 TN4 . 
L 4 SO4 B 1 504 504 SO4 SO4 . 
M 5 HOH A 1 504 504 HOH HOH . 
M 5 HOH A 2 505 505 HOH HOH . 
M 5 HOH A 3 506 506 HOH HOH . 
M 5 HOH A 4 507 507 HOH HOH . 
M 5 HOH A 5 508 508 HOH HOH . 
M 5 HOH A 6 509 509 HOH HOH . 
M 5 HOH A 7 510 510 HOH HOH . 
M 5 HOH A 8 511 511 HOH HOH . 
M 5 HOH A 9 512 512 HOH HOH . 
N 5 HOH B 1 505 505 HOH HOH . 
N 5 HOH B 2 506 506 HOH HOH . 
N 5 HOH B 3 507 507 HOH HOH . 
N 5 HOH B 4 508 508 HOH HOH . 
N 5 HOH B 5 509 509 HOH HOH . 
N 5 HOH B 6 510 510 HOH HOH . 
N 5 HOH B 7 511 511 HOH HOH . 
N 5 HOH B 8 512 512 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TN4 . . . K 3 -4.706 5.781 -0.99 1 22.22 ? C1 TN4 451 B 1 
HETATM 2 C C2 TN4 . . . K 3 -4.678 4.614 -2.025 1 22.84 ? C2 TN4 451 B 1 
HETATM 3 C C3 TN4 . . . K 3 -3.996 5.007 -3.379 1 23.52 ? C3 TN4 451 B 1 
HETATM 4 C C4 TN4 . . . K 3 -2.631 5.687 -3.116 1 23.62 ? C4 TN4 451 B 1 
HETATM 5 C C5 TN4 . . . K 3 -2.722 6.841 -2.106 1 22.62 ? C5 TN4 451 B 1 
HETATM 6 C C6 TN4 . . . K 3 -3.306 6.361 -0.784 1 21.71 ? C6 TN4 451 B 1 
HETATM 7 C C11 TN4 . . . K 3 -5.25 5.369 0.389 1 21.61 ? C11 TN4 451 B 1 
HETATM 8 O O11 TN4 . . . K 3 -5.542 6.757 -1.419 1 22.52 ? O11 TN4 451 B 1 
HETATM 9 C C21 TN4 . . . K 3 -6.046 4.007 -2.284 1 22.64 ? C21 TN4 451 B 1 
HETATM 10 C C22 TN4 . . . K 3 -6.283 2.674 -1.537 1 22.4 ? C22 TN4 451 B 1 
HETATM 11 C C23 TN4 . . . K 3 -7.73 2.294 -1.27 1 21.31 ? C23 TN4 451 B 1 
HETATM 12 C C24 TN4 . . . K 3 -8.501 3.167 -0.312 1 19.65 ? C24 TN4 451 B 1 
HETATM 13 C C25 TN4 . . . K 3 -8.633 3.179 1.023 1 19.1 ? C25 TN4 451 B 1 
HETATM 14 C C2A TN4 . . . K 3 -7.145 4.696 -3.059 1 21.59 ? C2A TN4 451 B 1 
HETATM 15 O O2A TN4 . . . K 3 -5.874 2.684 -2.854 1 22.63 ? O2A TN4 451 B 1 
HETATM 16 C C2B TN4 . . . K 3 -9.486 4.161 1.787 1 18.64 ? C2B TN4 451 B 1 
HETATM 17 C C2C TN4 . . . K 3 -7.91 2.191 1.926 1 17.5 ? C2C TN4 451 B 1 
HETATM 18 C C31 TN4 . . . K 3 -4.234 3.919 -5.501 1 24.09 ? C31 TN4 451 B 1 
HETATM 19 O O31 TN4 . . . K 3 -3.755 3.832 -4.152 1 23.78 ? O31 TN4 451 B 1 
HETATM 20 C C41 TN4 . . . K 3 -0.723 4.24 -3.34 1 26.78 ? C41 TN4 451 B 1 
HETATM 21 O O41 TN4 . . . K 3 -1.712 4.683 -2.585 1 25.4 ? O41 TN4 451 B 1 
HETATM 22 N N42 TN4 . . . K 3 -0.194 3.08 -2.893 1 28.15 ? N42 TN4 451 B 1 
HETATM 23 C C43 TN4 . . . K 3 0.817 2.345 -3.428 1 27.95 ? C43 TN4 451 B 1 
HETATM 24 O O4A TN4 . . . K 3 -0.408 4.886 -4.325 1 27.24 ? O4A TN4 451 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           215 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#