data_3FMW # _model_server_result.job_id NRPKj9Wj5Vg4AcOZOxrfYQ _model_server_result.datetime_utc '2024-11-22 20:03:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fmw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":534}' # _entry.id 3FMW # _exptl.entry_id 3FMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.03 _cell.angle_gamma 90 _cell.entry_id 3FMW _cell.length_a 145.265 _cell.length_b 114.437 _cell.length_c 138.563 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 C,H,K 1 2 B,F,G,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 -x+1/2,y+1/2,-z -1 0 0 0 1 0 0 0 -1 72.6325 57.2185 0 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 114.024419 0 134.9953 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 92 n n PA O2A FAD sing 93 n n PA O5B FAD sing 94 n n PA O3P FAD sing 95 n n O2A HOA2 FAD sing 96 n n O5B C5B FAD sing 97 n n C5B C4B FAD sing 98 n n C5B H51A FAD sing 99 n n C5B H52A FAD sing 100 n n C4B O4B FAD sing 101 n n C4B C3B FAD sing 102 n n C4B H4B FAD sing 103 n n O4B C1B FAD sing 104 n n C3B O3B FAD sing 105 n n C3B C2B FAD sing 106 n n C3B H3B FAD sing 107 n n O3B HO3A FAD sing 108 n n C2B O2B FAD sing 109 n n C2B C1B FAD sing 110 n n C2B H2B FAD sing 111 n n O2B HO2A FAD sing 112 n n C1B N9A FAD sing 113 n n C1B H1B FAD sing 114 n n N9A C8A FAD sing 115 n y N9A C4A FAD sing 116 n y C8A N7A FAD doub 117 n y C8A H8A FAD sing 118 n n N7A C5A FAD sing 119 n y C5A C6A FAD sing 120 n y C5A C4A FAD doub 121 n y C6A N6A FAD sing 122 n n C6A N1A FAD doub 123 n y N6A H61A FAD sing 124 n n N6A H62A FAD sing 125 n n N1A C2A FAD sing 126 n y C2A N3A FAD doub 127 n y C2A H2A FAD sing 128 n n N3A C4A FAD sing 129 n y N1 C2 FAD sing 130 n n N1 C10 FAD doub 131 n n C2 O2 FAD doub 132 n n C2 N3 FAD sing 133 n n N3 C4 FAD sing 134 n n N3 HN3 FAD sing 135 n n C4 O4 FAD doub 136 n n C4 C4X FAD sing 137 n n C4X N5 FAD doub 138 n n C4X C10 FAD sing 139 n n N5 C5X FAD sing 140 n n C5X C6 FAD doub 141 n y C5X C9A FAD sing 142 n y C6 C7 FAD sing 143 n y C6 H6 FAD sing 144 n n C7 C7M FAD sing 145 n n C7 C8 FAD doub 146 n y C7M HM71 FAD sing 147 n n C7M HM72 FAD sing 148 n n C7M HM73 FAD sing 149 n n C8 C8M FAD sing 150 n n C8 C9 FAD sing 151 n y C8M HM81 FAD sing 152 n n C8M HM82 FAD sing 153 n n C8M HM83 FAD sing 154 n n C9 C9A FAD doub 155 n y C9 H9 FAD sing 156 n n C9A N10 FAD sing 157 n n N10 C10 FAD sing 158 n n N10 C1' FAD sing 159 n n C1' C2' FAD sing 160 n n C1' "H1'1" FAD sing 161 n n C1' "H1'2" FAD sing 162 n n C2' O2' FAD sing 163 n n C2' C3' FAD sing 164 n n C2' H2' FAD sing 165 n n O2' HO2' FAD sing 166 n n C3' O3' FAD sing 167 n n C3' C4' FAD sing 168 n n C3' H3' FAD sing 169 n n O3' HO3' FAD sing 170 n n C4' O4' FAD sing 171 n n C4' C5' FAD sing 172 n n C4' H4' FAD sing 173 n n O4' HO4' FAD sing 174 n n C5' O5' FAD sing 175 n n C5' "H5'1" FAD sing 176 n n C5' "H5'2" FAD sing 177 n n O5' P FAD sing 178 n n P O1P FAD doub 179 n n P O2P FAD sing 180 n n P O3P FAD sing 181 n n O2P HOP2 FAD sing 182 n n # _atom_sites.entry_id 3FMW _atom_sites.fract_transf_matrix[1][1] 0.006884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FAD A 1 534 500 FAD FAD . E 3 EDO A 1 535 1 EDO EDO . F 2 FAD B 1 534 500 FAD FAD . G 3 EDO B 1 535 1 EDO EDO . H 2 FAD C 1 534 500 FAD FAD . I 4 HOH A 1 536 2 HOH HOH . I 4 HOH A 2 537 9 HOH HOH . I 4 HOH A 3 538 11 HOH HOH . I 4 HOH A 4 539 20 HOH HOH . J 4 HOH B 1 536 22 HOH HOH . J 4 HOH B 2 537 23 HOH HOH . J 4 HOH B 3 538 26 HOH HOH . J 4 HOH B 4 539 28 HOH HOH . J 4 HOH B 5 540 31 HOH HOH . J 4 HOH B 6 541 32 HOH HOH . J 4 HOH B 7 542 33 HOH HOH . K 4 HOH C 1 535 3 HOH HOH . K 4 HOH C 2 536 6 HOH HOH . K 4 HOH C 3 537 38 HOH HOH . K 4 HOH C 4 538 41 HOH HOH . K 4 HOH C 5 539 43 HOH HOH . K 4 HOH C 6 540 49 HOH HOH . K 4 HOH C 7 541 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 2 50.293 -91.505 37.259 1 118.59 ? PA FAD 534 B 1 HETATM 2 O O1A FAD . . . F 2 49.2 -90.617 37.649 1 73.06 ? O1A FAD 534 B 1 HETATM 3 O O2A FAD . . . F 2 50.338 -92.632 38.183 1 135.45 ? O2A FAD 534 B 1 HETATM 4 O O5B FAD . . . F 2 49.968 -92.037 35.73 1 212.18 ? O5B FAD 534 B 1 HETATM 5 C C5B FAD . . . F 2 50.956 -92.804 35.089 1 163.59 ? C5B FAD 534 B 1 HETATM 6 C C4B FAD . . . F 2 50.903 -92.582 33.744 1 119.58 ? C4B FAD 534 B 1 HETATM 7 O O4B FAD . . . F 2 52.083 -93.045 33.126 1 100.02 ? O4B FAD 534 B 1 HETATM 8 C C3B FAD . . . F 2 49.889 -93.433 33.022 1 152.58 ? C3B FAD 534 B 1 HETATM 9 O O3B FAD . . . F 2 48.269 -93.277 33.168 1 115.74 ? O3B FAD 534 B 1 HETATM 10 C C2B FAD . . . F 2 50.535 -94.726 32.619 1 146.48 ? C2B FAD 534 B 1 HETATM 11 O O2B FAD . . . F 2 49.873 -95.792 33.071 1 119.66 ? O2B FAD 534 B 1 HETATM 12 C C1B FAD . . . F 2 51.731 -94.597 33.22 1 145.2 ? C1B FAD 534 B 1 HETATM 13 N N9A FAD . . . F 2 52.732 -95.43 32.809 1 141.89 ? N9A FAD 534 B 1 HETATM 14 C C8A FAD . . . F 2 53.452 -96.379 33.698 1 184.13 ? C8A FAD 534 B 1 HETATM 15 N N7A FAD . . . F 2 54.399 -96.99 32.982 1 191.7 ? N7A FAD 534 B 1 HETATM 16 C C5A FAD . . . F 2 54.344 -96.457 31.558 1 171.44 ? C5A FAD 534 B 1 HETATM 17 C C6A FAD . . . F 2 55.169 -96.784 30.322 1 152.27 ? C6A FAD 534 B 1 HETATM 18 N N6A FAD . . . F 2 56.241 -97.778 30.393 1 177.54 ? N6A FAD 534 B 1 HETATM 19 N N1A FAD . . . F 2 54.93 -96.199 29.234 1 97 ? N1A FAD 534 B 1 HETATM 20 C C2A FAD . . . F 2 53.804 -95.154 29.157 1 119.18 ? C2A FAD 534 B 1 HETATM 21 N N3A FAD . . . F 2 53.087 -94.867 30.222 1 159.14 ? N3A FAD 534 B 1 HETATM 22 C C4A FAD . . . F 2 53.352 -95.532 31.487 1 151.61 ? C4A FAD 534 B 1 HETATM 23 N N1 FAD . . . F 2 48.574 -86.155 45.655 1 80.95 ? N1 FAD 534 B 1 HETATM 24 C C2 FAD . . . F 2 47.991 -84.738 45.846 1 96.91 ? C2 FAD 534 B 1 HETATM 25 O O2 FAD . . . F 2 48.601 -83.799 45.457 1 124.08 ? O2 FAD 534 B 1 HETATM 26 N N3 FAD . . . F 2 46.683 -84.547 46.523 1 90.78 ? N3 FAD 534 B 1 HETATM 27 C C4 FAD . . . F 2 45.949 -85.663 46.996 1 80.11 ? C4 FAD 534 B 1 HETATM 28 O O4 FAD . . . F 2 44.897 -85.517 47.52 1 76.02 ? O4 FAD 534 B 1 HETATM 29 C C4X FAD . . . F 2 46.522 -87.052 46.803 1 114.23 ? C4X FAD 534 B 1 HETATM 30 N N5 FAD . . . F 2 45.82 -88.136 47.255 1 114.14 ? N5 FAD 534 B 1 HETATM 31 C C5X FAD . . . F 2 46.405 -89.603 47.059 1 138 ? C5X FAD 534 B 1 HETATM 32 C C6 FAD . . . F 2 45.583 -90.832 47.589 1 66.76 ? C6 FAD 534 B 1 HETATM 33 C C7 FAD . . . F 2 46.092 -92.131 47.422 1 69.79 ? C7 FAD 534 B 1 HETATM 34 C C7M FAD . . . F 2 45.264 -93.325 47.929 1 95.93 ? C7M FAD 534 B 1 HETATM 35 C C8 FAD . . . F 2 47.496 -92.359 46.703 1 80.18 ? C8 FAD 534 B 1 HETATM 36 C C8M FAD . . . F 2 48.07 -93.759 46.518 1 92.77 ? C8M FAD 534 B 1 HETATM 37 C C9 FAD . . . F 2 48.213 -91.304 46.241 1 70.42 ? C9 FAD 534 B 1 HETATM 38 C C9A FAD . . . F 2 47.628 -89.798 46.428 1 129.76 ? C9A FAD 534 B 1 HETATM 39 N N10 FAD . . . F 2 48.438 -88.567 45.913 1 122.98 ? N10 FAD 534 B 1 HETATM 40 C C10 FAD . . . F 2 47.887 -87.231 46.099 1 111.39 ? C10 FAD 534 B 1 HETATM 41 C C1' FAD . . . F 2 49.698 -88.776 45.152 1 134.91 ? C1' FAD 534 B 1 HETATM 42 C C2' FAD . . . F 2 49.271 -89.273 43.731 1 81.69 ? C2' FAD 534 B 1 HETATM 43 O O2' FAD . . . F 2 48.328 -88.702 43.294 1 126.85 ? O2' FAD 534 B 1 HETATM 44 C C3' FAD . . . F 2 50.553 -89.291 42.815 1 107.35 ? C3' FAD 534 B 1 HETATM 45 O O3' FAD . . . F 2 51.366 -88.167 43.04 1 64.25 ? O3' FAD 534 B 1 HETATM 46 C C4' FAD . . . F 2 50.219 -89.447 41.272 1 151.18 ? C4' FAD 534 B 1 HETATM 47 O O4' FAD . . . F 2 48.988 -88.841 40.936 1 106.62 ? O4' FAD 534 B 1 HETATM 48 C C5' FAD . . . F 2 51.38 -88.903 40.352 1 103.48 ? C5' FAD 534 B 1 HETATM 49 O O5' FAD . . . F 2 50.947 -88.758 38.987 1 38.57 ? O5' FAD 534 B 1 HETATM 50 P P FAD . . . F 2 51.938 -89.111 37.672 1 160.86 ? P FAD 534 B 1 HETATM 51 O O1P FAD . . . F 2 53.354 -88.748 37.896 1 27.46 ? O1P FAD 534 B 1 HETATM 52 O O2P FAD . . . F 2 51.423 -88.314 36.565 1 129.9 ? O2P FAD 534 B 1 HETATM 53 O O3P FAD . . . F 2 51.785 -90.751 37.288 1 61.39 ? O3P FAD 534 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #