data_3FMW # _model_server_result.job_id PdeTl9DPL7RJfn6NddCDjA _model_server_result.datetime_utc '2024-11-14 23:38:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fmw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":534}' # _entry.id 3FMW # _exptl.entry_id 3FMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.03 _cell.angle_gamma 90 _cell.entry_id 3FMW _cell.length_a 145.265 _cell.length_b 114.437 _cell.length_c 138.563 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,I 1 1 C,H,K 1 2 B,F,G,J 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 -x+1/2,y+1/2,-z -1 0 0 0 1 0 0 0 -1 72.6325 57.2185 0 3 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 114.024419 0 134.9953 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 92 n n PA O2A FAD sing 93 n n PA O5B FAD sing 94 n n PA O3P FAD sing 95 n n O2A HOA2 FAD sing 96 n n O5B C5B FAD sing 97 n n C5B C4B FAD sing 98 n n C5B H51A FAD sing 99 n n C5B H52A FAD sing 100 n n C4B O4B FAD sing 101 n n C4B C3B FAD sing 102 n n C4B H4B FAD sing 103 n n O4B C1B FAD sing 104 n n C3B O3B FAD sing 105 n n C3B C2B FAD sing 106 n n C3B H3B FAD sing 107 n n O3B HO3A FAD sing 108 n n C2B O2B FAD sing 109 n n C2B C1B FAD sing 110 n n C2B H2B FAD sing 111 n n O2B HO2A FAD sing 112 n n C1B N9A FAD sing 113 n n C1B H1B FAD sing 114 n n N9A C8A FAD sing 115 n y N9A C4A FAD sing 116 n y C8A N7A FAD doub 117 n y C8A H8A FAD sing 118 n n N7A C5A FAD sing 119 n y C5A C6A FAD sing 120 n y C5A C4A FAD doub 121 n y C6A N6A FAD sing 122 n n C6A N1A FAD doub 123 n y N6A H61A FAD sing 124 n n N6A H62A FAD sing 125 n n N1A C2A FAD sing 126 n y C2A N3A FAD doub 127 n y C2A H2A FAD sing 128 n n N3A C4A FAD sing 129 n y N1 C2 FAD sing 130 n n N1 C10 FAD doub 131 n n C2 O2 FAD doub 132 n n C2 N3 FAD sing 133 n n N3 C4 FAD sing 134 n n N3 HN3 FAD sing 135 n n C4 O4 FAD doub 136 n n C4 C4X FAD sing 137 n n C4X N5 FAD doub 138 n n C4X C10 FAD sing 139 n n N5 C5X FAD sing 140 n n C5X C6 FAD doub 141 n y C5X C9A FAD sing 142 n y C6 C7 FAD sing 143 n y C6 H6 FAD sing 144 n n C7 C7M FAD sing 145 n n C7 C8 FAD doub 146 n y C7M HM71 FAD sing 147 n n C7M HM72 FAD sing 148 n n C7M HM73 FAD sing 149 n n C8 C8M FAD sing 150 n n C8 C9 FAD sing 151 n y C8M HM81 FAD sing 152 n n C8M HM82 FAD sing 153 n n C8M HM83 FAD sing 154 n n C9 C9A FAD doub 155 n y C9 H9 FAD sing 156 n n C9A N10 FAD sing 157 n n N10 C10 FAD sing 158 n n N10 C1' FAD sing 159 n n C1' C2' FAD sing 160 n n C1' "H1'1" FAD sing 161 n n C1' "H1'2" FAD sing 162 n n C2' O2' FAD sing 163 n n C2' C3' FAD sing 164 n n C2' H2' FAD sing 165 n n O2' HO2' FAD sing 166 n n C3' O3' FAD sing 167 n n C3' C4' FAD sing 168 n n C3' H3' FAD sing 169 n n O3' HO3' FAD sing 170 n n C4' O4' FAD sing 171 n n C4' C5' FAD sing 172 n n C4' H4' FAD sing 173 n n O4' HO4' FAD sing 174 n n C5' O5' FAD sing 175 n n C5' "H5'1" FAD sing 176 n n C5' "H5'2" FAD sing 177 n n O5' P FAD sing 178 n n P O1P FAD doub 179 n n P O2P FAD sing 180 n n P O3P FAD sing 181 n n O2P HOP2 FAD sing 182 n n # _atom_sites.entry_id 3FMW _atom_sites.fract_transf_matrix[1][1] 0.006884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001593 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008738 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007408 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FAD A 1 534 500 FAD FAD . E 3 EDO A 1 535 1 EDO EDO . F 2 FAD B 1 534 500 FAD FAD . G 3 EDO B 1 535 1 EDO EDO . H 2 FAD C 1 534 500 FAD FAD . I 4 HOH A 1 536 2 HOH HOH . I 4 HOH A 2 537 9 HOH HOH . I 4 HOH A 3 538 11 HOH HOH . I 4 HOH A 4 539 20 HOH HOH . J 4 HOH B 1 536 22 HOH HOH . J 4 HOH B 2 537 23 HOH HOH . J 4 HOH B 3 538 26 HOH HOH . J 4 HOH B 4 539 28 HOH HOH . J 4 HOH B 5 540 31 HOH HOH . J 4 HOH B 6 541 32 HOH HOH . J 4 HOH B 7 542 33 HOH HOH . K 4 HOH C 1 535 3 HOH HOH . K 4 HOH C 2 536 6 HOH HOH . K 4 HOH C 3 537 38 HOH HOH . K 4 HOH C 4 538 41 HOH HOH . K 4 HOH C 5 539 43 HOH HOH . K 4 HOH C 6 540 49 HOH HOH . K 4 HOH C 7 541 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . H 2 21.458 -56.083 23.511 1 101.01 ? PA FAD 534 C 1 HETATM 2 O O1A FAD . . . H 2 20.082 -55.803 23.098 1 98.79 ? O1A FAD 534 C 1 HETATM 3 O O2A FAD . . . H 2 22.353 -55.066 22.969 1 126.62 ? O2A FAD 534 C 1 HETATM 4 O O5B FAD . . . H 2 21.555 -56.087 25.173 1 128.58 ? O5B FAD 534 C 1 HETATM 5 C C5B FAD . . . H 2 21.886 -54.878 25.846 1 136.43 ? C5B FAD 534 C 1 HETATM 6 C C4B FAD . . . H 2 21.462 -54.83 27.156 1 111.84 ? C4B FAD 534 C 1 HETATM 7 O O4B FAD . . . H 2 22.497 -55.065 28.094 1 137.7 ? O4B FAD 534 C 1 HETATM 8 C C3B FAD . . . H 2 21.07 -53.443 27.586 1 82.07 ? C3B FAD 534 C 1 HETATM 9 O O3B FAD . . . H 2 19.838 -52.655 26.92 1 100.35 ? O3B FAD 534 C 1 HETATM 10 C C2B FAD . . . H 2 22.234 -52.754 28.233 1 117.23 ? C2B FAD 534 C 1 HETATM 11 O O2B FAD . . . H 2 22.499 -51.569 27.672 1 108.83 ? O2B FAD 534 C 1 HETATM 12 C C1B FAD . . . H 2 23.213 -53.644 28 1 146.51 ? C1B FAD 534 C 1 HETATM 13 N N9A FAD . . . H 2 24.352 -53.515 28.75 1 154.32 ? N9A FAD 534 C 1 HETATM 14 C C8A FAD . . . H 2 25.724 -53.379 28.188 1 170.03 ? C8A FAD 534 C 1 HETATM 15 N N7A FAD . . . H 2 26.597 -53.321 29.199 1 124.88 ? N7A FAD 534 C 1 HETATM 16 C C5A FAD . . . H 2 25.822 -53.421 30.505 1 51.45 ? C5A FAD 534 C 1 HETATM 17 C C6A FAD . . . H 2 26.282 -53.395 31.96 1 87.06 ? C6A FAD 534 C 1 HETATM 18 N N6A FAD . . . H 2 27.711 -53.281 32.277 1 62.18 ? N6A FAD 534 C 1 HETATM 19 N N1A FAD . . . H 2 25.432 -53.482 32.889 1 84.65 ? N1A FAD 534 C 1 HETATM 20 C C2A FAD . . . H 2 23.934 -53.614 32.55 1 89.75 ? C2A FAD 534 C 1 HETATM 21 N N3A FAD . . . H 2 23.53 -53.633 31.296 1 91.08 ? N3A FAD 534 C 1 HETATM 22 C C4A FAD . . . H 2 24.495 -53.532 30.21 1 90.94 ? C4A FAD 534 C 1 HETATM 23 N N1 FAD . . . H 2 18.513 -60.298 14.75 1 86.06 ? N1 FAD 534 C 1 HETATM 24 C C2 FAD . . . H 2 17.332 -61.16 14.265 1 123.18 ? C2 FAD 534 C 1 HETATM 25 O O2 FAD . . . H 2 17.065 -62.156 14.848 1 127.55 ? O2 FAD 534 C 1 HETATM 26 N N3 FAD . . . H 2 16.547 -60.753 13.076 1 142.96 ? N3 FAD 534 C 1 HETATM 27 C C4 FAD . . . H 2 16.876 -59.566 12.382 1 104.41 ? C4 FAD 534 C 1 HETATM 28 O O4 FAD . . . H 2 16.247 -59.235 11.44 1 131.86 ? O4 FAD 534 C 1 HETATM 29 C C4X FAD . . . H 2 18.038 -58.716 12.861 1 74.23 ? C4X FAD 534 C 1 HETATM 30 N N5 FAD . . . H 2 18.363 -57.565 12.19 1 122.76 ? N5 FAD 534 C 1 HETATM 31 C C5X FAD . . . H 2 19.578 -56.657 12.68 1 76.31 ? C5X FAD 534 C 1 HETATM 32 C C6 FAD . . . H 2 19.938 -55.339 11.897 1 108.58 ? C6 FAD 534 C 1 HETATM 33 C C7 FAD . . . H 2 21.013 -54.533 12.323 1 79.72 ? C7 FAD 534 C 1 HETATM 34 C C7M FAD . . . H 2 21.372 -53.239 11.573 1 74.75 ? C7M FAD 534 C 1 HETATM 35 C C8 FAD . . . H 2 21.863 -54.949 13.592 1 65.62 ? C8 FAD 534 C 1 HETATM 36 C C8M FAD . . . H 2 23.02 -54.072 14.066 1 82.6 ? C8M FAD 534 C 1 HETATM 37 C C9 FAD . . . H 2 21.559 -56.085 14.272 1 96.75 ? C9 FAD 534 C 1 HETATM 38 C C9A FAD . . . H 2 20.322 -57.029 13.794 1 72.72 ? C9A FAD 534 C 1 HETATM 39 N N10 FAD . . . H 2 19.966 -58.343 14.569 1 87.48 ? N10 FAD 534 C 1 HETATM 40 C C10 FAD . . . H 2 18.848 -59.16 14.1 1 65.67 ? C10 FAD 534 C 1 HETATM 41 C C1' FAD . . . H 2 20.728 -58.73 15.793 1 123.86 ? C1' FAD 534 C 1 HETATM 42 C C2' FAD . . . H 2 20.621 -57.637 16.913 1 124.56 ? C2' FAD 534 C 1 HETATM 43 O O2' FAD . . . H 2 19.533 -57.244 17.158 1 91.5 ? O2' FAD 534 C 1 HETATM 44 C C3' FAD . . . H 2 21.405 -58.162 18.168 1 105.34 ? C3' FAD 534 C 1 HETATM 45 O O3' FAD . . . H 2 22.211 -59.253 17.808 1 96.05 ? O3' FAD 534 C 1 HETATM 46 C C4' FAD . . . H 2 20.474 -58.524 19.397 1 98.77 ? C4' FAD 534 C 1 HETATM 47 O O4' FAD . . . H 2 19.845 -57.351 19.853 1 86.71 ? O4' FAD 534 C 1 HETATM 48 C C5' FAD . . . H 2 21.372 -59.1 20.553 1 91.93 ? C5' FAD 534 C 1 HETATM 49 O O5' FAD . . . H 2 20.658 -59.538 21.718 1 115.27 ? O5' FAD 534 C 1 HETATM 50 P P FAD . . . H 2 21.21 -58.987 23.202 1 110.64 ? P FAD 534 C 1 HETATM 51 O O1P FAD . . . H 2 22.238 -59.869 23.762 1 63 ? O1P FAD 534 C 1 HETATM 52 O O2P FAD . . . H 2 20.096 -58.871 24.146 1 53.05 ? O2P FAD 534 C 1 HETATM 53 O O3P FAD . . . H 2 21.944 -57.524 22.858 1 135.61 ? O3P FAD 534 C 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #