data_3FNF # _model_server_result.job_id 1uhFJ_WhrPM01H2p1roijw _model_server_result.datetime_utc '2024-11-01 18:20:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fnf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":410}' # _entry.id 3FNF # _exptl.entry_id 3FNF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.219 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-benzyl-2-(2,4-dichlorophenoxy)phenol _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.51 _cell.angle_gamma 90 _cell.entry_id 3FNF _cell.length_a 125.651 _cell.length_b 92.377 _cell.length_c 102.406 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FNF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C19 H14 Cl2 O2' _chem_comp.formula_weight 345.219 _chem_comp.id JPM _chem_comp.mon_nstd_flag . _chem_comp.name 5-benzyl-2-(2,4-dichlorophenoxy)phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 JPM doub 173 n y C2 O2 JPM sing 174 n n C2 C1 JPM sing 175 n y C3 C4 JPM sing 176 n y C3 O1 JPM sing 177 n n C4 C5 JPM doub 178 n y C5 C6 JPM sing 179 n y C7 C8 JPM doub 180 n y C7 C12 JPM sing 181 n y C7 CL1 JPM sing 182 n n C8 C9 JPM sing 183 n y C8 O1 JPM sing 184 n n C9 C10 JPM doub 185 n y C10 C11 JPM sing 186 n y C11 C12 JPM doub 187 n y C11 CL5 JPM sing 188 n n C15 C16 JPM doub 189 n y C15 C14 JPM sing 190 n y C16 C17 JPM sing 191 n y C18 C6 JPM sing 192 n n C18 C13 JPM sing 193 n n C19 C13 JPM sing 194 n y C19 C14 JPM doub 195 n y C1 C6 JPM doub 196 n y C13 C17 JPM doub 197 n y C4 H4 JPM sing 198 n n C5 H5 JPM sing 199 n n C9 H9 JPM sing 200 n n C10 H10 JPM sing 201 n n C12 H12 JPM sing 202 n n C15 H15 JPM sing 203 n n C16 H16 JPM sing 204 n n C18 H18 JPM sing 205 n n C18 H18A JPM sing 206 n n C19 H19 JPM sing 207 n n O2 HO2 JPM sing 208 n n C1 H1 JPM sing 209 n n C17 H17 JPM sing 210 n n C14 H14 JPM sing 211 n n # _atom_sites.entry_id 3FNF _atom_sites.fract_transf_matrix[1][1] 0.007959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002358 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAD A 1 300 300 NAD NAD . F 3 JPM A 1 400 400 JPM JPM . G 2 NAD B 1 310 310 NAD NAD . H 3 JPM B 1 410 410 JPM JPM . I 2 NAD C 1 320 320 NAD NAD . J 3 JPM C 1 420 420 JPM JPM . K 2 NAD D 1 330 330 NAD NAD . L 3 JPM D 1 430 430 JPM JPM . M 4 HOH A 1 270 1 HOH HOH . M 4 HOH A 2 271 2 HOH HOH . M 4 HOH A 3 272 13 HOH HOH . M 4 HOH A 4 273 16 HOH HOH . M 4 HOH A 5 274 21 HOH HOH . M 4 HOH A 6 275 23 HOH HOH . M 4 HOH A 7 276 28 HOH HOH . M 4 HOH A 8 277 31 HOH HOH . M 4 HOH A 9 278 32 HOH HOH . M 4 HOH A 10 279 33 HOH HOH . M 4 HOH A 11 280 38 HOH HOH . M 4 HOH A 12 281 41 HOH HOH . M 4 HOH A 13 282 43 HOH HOH . M 4 HOH A 14 283 44 HOH HOH . M 4 HOH A 15 284 48 HOH HOH . M 4 HOH A 16 285 50 HOH HOH . M 4 HOH A 17 286 53 HOH HOH . M 4 HOH A 18 287 56 HOH HOH . M 4 HOH A 19 288 57 HOH HOH . M 4 HOH A 20 289 58 HOH HOH . M 4 HOH A 21 290 63 HOH HOH . M 4 HOH A 22 291 66 HOH HOH . M 4 HOH A 23 292 67 HOH HOH . M 4 HOH A 24 293 74 HOH HOH . M 4 HOH A 25 294 78 HOH HOH . M 4 HOH A 26 295 79 HOH HOH . M 4 HOH A 27 296 81 HOH HOH . M 4 HOH A 28 297 82 HOH HOH . M 4 HOH A 29 298 93 HOH HOH . M 4 HOH A 30 299 96 HOH HOH . M 4 HOH A 31 301 103 HOH HOH . M 4 HOH A 32 302 114 HOH HOH . M 4 HOH A 33 303 116 HOH HOH . M 4 HOH A 34 304 121 HOH HOH . M 4 HOH A 35 305 126 HOH HOH . M 4 HOH A 36 306 128 HOH HOH . M 4 HOH A 37 307 133 HOH HOH . M 4 HOH A 38 308 137 HOH HOH . M 4 HOH A 39 309 139 HOH HOH . M 4 HOH A 40 310 143 HOH HOH . M 4 HOH A 41 311 144 HOH HOH . M 4 HOH A 42 312 148 HOH HOH . M 4 HOH A 43 313 149 HOH HOH . M 4 HOH A 44 314 154 HOH HOH . M 4 HOH A 45 315 155 HOH HOH . M 4 HOH A 46 316 157 HOH HOH . M 4 HOH A 47 317 164 HOH HOH . M 4 HOH A 48 318 170 HOH HOH . M 4 HOH A 49 319 172 HOH HOH . M 4 HOH A 50 320 176 HOH HOH . M 4 HOH A 51 321 177 HOH HOH . M 4 HOH A 52 322 178 HOH HOH . M 4 HOH A 53 323 193 HOH HOH . M 4 HOH A 54 324 181 HOH HOH . M 4 HOH A 55 325 184 HOH HOH . M 4 HOH A 56 326 185 HOH HOH . M 4 HOH A 57 327 187 HOH HOH . M 4 HOH A 58 328 188 HOH HOH . M 4 HOH A 59 329 190 HOH HOH . M 4 HOH A 60 330 192 HOH HOH . M 4 HOH A 61 331 201 HOH HOH . M 4 HOH A 62 332 211 HOH HOH . M 4 HOH A 63 333 226 HOH HOH . M 4 HOH A 64 334 229 HOH HOH . M 4 HOH A 65 335 231 HOH HOH . M 4 HOH A 66 336 237 HOH HOH . M 4 HOH A 67 337 250 HOH HOH . M 4 HOH A 68 338 253 HOH HOH . N 4 HOH B 1 270 7 HOH HOH . N 4 HOH B 2 271 11 HOH HOH . N 4 HOH B 3 272 14 HOH HOH . N 4 HOH B 4 273 17 HOH HOH . N 4 HOH B 5 274 19 HOH HOH . N 4 HOH B 6 275 35 HOH HOH . N 4 HOH B 7 276 36 HOH HOH . N 4 HOH B 8 277 46 HOH HOH . N 4 HOH B 9 278 52 HOH HOH . N 4 HOH B 10 279 64 HOH HOH . N 4 HOH B 11 280 72 HOH HOH . N 4 HOH B 12 281 73 HOH HOH . N 4 HOH B 13 282 77 HOH HOH . N 4 HOH B 14 283 83 HOH HOH . N 4 HOH B 15 284 84 HOH HOH . N 4 HOH B 16 285 85 HOH HOH . N 4 HOH B 17 286 89 HOH HOH . N 4 HOH B 18 287 92 HOH HOH . N 4 HOH B 19 288 97 HOH HOH . N 4 HOH B 20 289 98 HOH HOH . N 4 HOH B 21 290 102 HOH HOH . N 4 HOH B 22 291 104 HOH HOH . N 4 HOH B 23 292 105 HOH HOH . N 4 HOH B 24 293 108 HOH HOH . N 4 HOH B 25 294 110 HOH HOH . N 4 HOH B 26 295 118 HOH HOH . N 4 HOH B 27 296 123 HOH HOH . N 4 HOH B 28 297 125 HOH HOH . N 4 HOH B 29 298 127 HOH HOH . N 4 HOH B 30 299 135 HOH HOH . N 4 HOH B 31 300 140 HOH HOH . N 4 HOH B 32 301 142 HOH HOH . N 4 HOH B 33 302 145 HOH HOH . N 4 HOH B 34 303 147 HOH HOH . N 4 HOH B 35 304 150 HOH HOH . N 4 HOH B 36 305 153 HOH HOH . N 4 HOH B 37 306 163 HOH HOH . N 4 HOH B 38 307 166 HOH HOH . N 4 HOH B 39 308 169 HOH HOH . N 4 HOH B 40 309 171 HOH HOH . N 4 HOH B 41 311 173 HOH HOH . N 4 HOH B 42 312 179 HOH HOH . N 4 HOH B 43 313 195 HOH HOH . N 4 HOH B 44 314 196 HOH HOH . N 4 HOH B 45 315 199 HOH HOH . N 4 HOH B 46 316 205 HOH HOH . N 4 HOH B 47 317 206 HOH HOH . N 4 HOH B 48 318 207 HOH HOH . N 4 HOH B 49 319 212 HOH HOH . N 4 HOH B 50 320 217 HOH HOH . N 4 HOH B 51 321 218 HOH HOH . N 4 HOH B 52 322 221 HOH HOH . N 4 HOH B 53 323 223 HOH HOH . N 4 HOH B 54 324 232 HOH HOH . N 4 HOH B 55 325 235 HOH HOH . N 4 HOH B 56 326 236 HOH HOH . N 4 HOH B 57 327 238 HOH HOH . N 4 HOH B 58 328 241 HOH HOH . N 4 HOH B 59 329 242 HOH HOH . N 4 HOH B 60 330 244 HOH HOH . N 4 HOH B 61 331 245 HOH HOH . N 4 HOH B 62 332 247 HOH HOH . N 4 HOH B 63 333 248 HOH HOH . N 4 HOH B 64 334 251 HOH HOH . O 4 HOH C 1 270 5 HOH HOH . O 4 HOH C 2 271 9 HOH HOH . O 4 HOH C 3 272 10 HOH HOH . O 4 HOH C 4 273 20 HOH HOH . O 4 HOH C 5 274 22 HOH HOH . O 4 HOH C 6 275 25 HOH HOH . O 4 HOH C 7 276 26 HOH HOH . O 4 HOH C 8 277 34 HOH HOH . O 4 HOH C 9 278 37 HOH HOH . O 4 HOH C 10 279 42 HOH HOH . O 4 HOH C 11 280 45 HOH HOH . O 4 HOH C 12 281 49 HOH HOH . O 4 HOH C 13 282 51 HOH HOH . O 4 HOH C 14 283 54 HOH HOH . O 4 HOH C 15 284 59 HOH HOH . O 4 HOH C 16 285 60 HOH HOH . O 4 HOH C 17 286 62 HOH HOH . O 4 HOH C 18 287 70 HOH HOH . O 4 HOH C 19 288 76 HOH HOH . O 4 HOH C 20 289 88 HOH HOH . O 4 HOH C 21 290 94 HOH HOH . O 4 HOH C 22 291 95 HOH HOH . O 4 HOH C 23 292 99 HOH HOH . O 4 HOH C 24 293 100 HOH HOH . O 4 HOH C 25 294 107 HOH HOH . O 4 HOH C 26 295 111 HOH HOH . O 4 HOH C 27 296 115 HOH HOH . O 4 HOH C 28 297 117 HOH HOH . O 4 HOH C 29 298 119 HOH HOH . O 4 HOH C 30 299 122 HOH HOH . O 4 HOH C 31 300 124 HOH HOH . O 4 HOH C 32 301 129 HOH HOH . O 4 HOH C 33 302 130 HOH HOH . O 4 HOH C 34 303 131 HOH HOH . O 4 HOH C 35 304 132 HOH HOH . O 4 HOH C 36 305 134 HOH HOH . O 4 HOH C 37 306 136 HOH HOH . O 4 HOH C 38 307 141 HOH HOH . O 4 HOH C 39 308 151 HOH HOH . O 4 HOH C 40 309 160 HOH HOH . O 4 HOH C 41 310 161 HOH HOH . O 4 HOH C 42 311 162 HOH HOH . O 4 HOH C 43 312 168 HOH HOH . O 4 HOH C 44 313 174 HOH HOH . O 4 HOH C 45 314 175 HOH HOH . O 4 HOH C 46 315 183 HOH HOH . O 4 HOH C 47 316 186 HOH HOH . O 4 HOH C 48 317 189 HOH HOH . O 4 HOH C 49 319 194 HOH HOH . O 4 HOH C 50 321 200 HOH HOH . O 4 HOH C 51 322 204 HOH HOH . O 4 HOH C 52 323 180 HOH HOH . O 4 HOH C 53 324 210 HOH HOH . O 4 HOH C 54 325 222 HOH HOH . O 4 HOH C 55 326 224 HOH HOH . O 4 HOH C 56 327 225 HOH HOH . O 4 HOH C 57 328 227 HOH HOH . O 4 HOH C 58 329 228 HOH HOH . O 4 HOH C 59 330 239 HOH HOH . O 4 HOH C 60 331 240 HOH HOH . O 4 HOH C 61 332 246 HOH HOH . O 4 HOH C 62 333 249 HOH HOH . O 4 HOH C 63 334 209 HOH HOH . P 4 HOH D 1 270 3 HOH HOH . P 4 HOH D 2 271 4 HOH HOH . P 4 HOH D 3 272 6 HOH HOH . P 4 HOH D 4 273 8 HOH HOH . P 4 HOH D 5 274 12 HOH HOH . P 4 HOH D 6 275 15 HOH HOH . P 4 HOH D 7 276 18 HOH HOH . P 4 HOH D 8 277 24 HOH HOH . P 4 HOH D 9 278 27 HOH HOH . P 4 HOH D 10 279 29 HOH HOH . P 4 HOH D 11 280 30 HOH HOH . P 4 HOH D 12 281 39 HOH HOH . P 4 HOH D 13 282 40 HOH HOH . P 4 HOH D 14 283 47 HOH HOH . P 4 HOH D 15 284 55 HOH HOH . P 4 HOH D 16 285 61 HOH HOH . P 4 HOH D 17 286 65 HOH HOH . P 4 HOH D 18 287 68 HOH HOH . P 4 HOH D 19 288 69 HOH HOH . P 4 HOH D 20 289 71 HOH HOH . P 4 HOH D 21 290 75 HOH HOH . P 4 HOH D 22 291 80 HOH HOH . P 4 HOH D 23 292 86 HOH HOH . P 4 HOH D 24 293 87 HOH HOH . P 4 HOH D 25 294 90 HOH HOH . P 4 HOH D 26 295 91 HOH HOH . P 4 HOH D 27 296 101 HOH HOH . P 4 HOH D 28 297 106 HOH HOH . P 4 HOH D 29 298 109 HOH HOH . P 4 HOH D 30 299 112 HOH HOH . P 4 HOH D 31 300 113 HOH HOH . P 4 HOH D 32 301 120 HOH HOH . P 4 HOH D 33 302 138 HOH HOH . P 4 HOH D 34 303 146 HOH HOH . P 4 HOH D 35 304 152 HOH HOH . P 4 HOH D 36 305 156 HOH HOH . P 4 HOH D 37 306 158 HOH HOH . P 4 HOH D 38 307 159 HOH HOH . P 4 HOH D 39 308 165 HOH HOH . P 4 HOH D 40 309 167 HOH HOH . P 4 HOH D 41 310 182 HOH HOH . P 4 HOH D 42 311 191 HOH HOH . P 4 HOH D 43 312 197 HOH HOH . P 4 HOH D 44 313 198 HOH HOH . P 4 HOH D 45 314 202 HOH HOH . P 4 HOH D 46 315 203 HOH HOH . P 4 HOH D 47 316 208 HOH HOH . P 4 HOH D 48 317 213 HOH HOH . P 4 HOH D 49 318 214 HOH HOH . P 4 HOH D 50 319 215 HOH HOH . P 4 HOH D 51 320 216 HOH HOH . P 4 HOH D 52 321 219 HOH HOH . P 4 HOH D 53 322 220 HOH HOH . P 4 HOH D 54 323 230 HOH HOH . P 4 HOH D 55 324 233 HOH HOH . P 4 HOH D 56 325 234 HOH HOH . P 4 HOH D 57 326 243 HOH HOH . P 4 HOH D 58 327 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 JPM . . . H 3 9.325 17.383 31.587 1 43 ? C2 JPM 410 B 1 HETATM 2 C C3 JPM . . . H 3 8.053 17.071 32.036 1 42.75 ? C3 JPM 410 B 1 HETATM 3 C C4 JPM . . . H 3 7.608 17.604 33.244 1 41.12 ? C4 JPM 410 B 1 HETATM 4 C C5 JPM . . . H 3 8.456 18.409 34.004 1 44.02 ? C5 JPM 410 B 1 HETATM 5 C C7 JPM . . . H 3 5.834 14.396 30.77 1 40.4 ? C7 JPM 410 B 1 HETATM 6 C C8 JPM . . . H 3 6.857 14.964 31.527 1 40.52 ? C8 JPM 410 B 1 HETATM 7 C C9 JPM . . . H 3 7.466 14.177 32.529 1 42.1 ? C9 JPM 410 B 1 HETATM 8 C C10 JPM . . . H 3 7.046 12.851 32.779 1 40.26 ? C10 JPM 410 B 1 HETATM 9 C C11 JPM . . . H 3 6.01 12.293 32.031 1 40 ? C11 JPM 410 B 1 HETATM 10 C C12 JPM . . . H 3 5.424 13.085 31.04 1 40.41 ? C12 JPM 410 B 1 HETATM 11 C C15 JPM . . . H 3 13.022 17.339 37.2 1 48.55 ? C15 JPM 410 B 1 HETATM 12 C C16 JPM . . . H 3 13.31 17.286 35.83 1 48.49 ? C16 JPM 410 B 1 HETATM 13 C C18 JPM . . . H 3 10.642 19.604 34.4 1 45.29 ? C18 JPM 410 B 1 HETATM 14 C C19 JPM . . . H 3 11.189 18.87 36.749 1 48.95 ? C19 JPM 410 B 1 HETATM 15 O O2 JPM . . . H 3 9.728 16.863 30.4 1 45.72 ? O2 JPM 410 B 1 HETATM 16 O O1 JPM . . . H 3 7.246 16.27 31.25 1 41.31 ? O1 JPM 410 B 1 HETATM 17 CL CL1 JPM . . . H 3 5.131 15.18 29.684 1 37.55 ? CL1 JPM 410 B 1 HETATM 18 CL CL5 JPM . . . H 3 5.511 10.89 32.265 1 36.92 ? CL5 JPM 410 B 1 HETATM 19 C C1 JPM . . . H 3 10.185 18.188 32.338 1 42.72 ? C1 JPM 410 B 1 HETATM 20 C C6 JPM . . . H 3 9.748 18.706 33.561 1 43.45 ? C6 JPM 410 B 1 HETATM 21 C C13 JPM . . . H 3 11.475 18.807 35.38 1 46.63 ? C13 JPM 410 B 1 HETATM 22 C C17 JPM . . . H 3 12.532 18.018 34.928 1 46.46 ? C17 JPM 410 B 1 HETATM 23 C C14 JPM . . . H 3 11.956 18.122 37.664 1 49.12 ? C14 JPM 410 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #