data_3FNG # _model_server_result.job_id 9S4qW9SG8vdyjl4EcBYbxg _model_server_result.datetime_utc '2024-11-01 18:28:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fng # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3FNG # _exptl.entry_id 3FNG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FNG _cell.length_a 90.048 _cell.length_b 90.048 _cell.length_c 183.888 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FNG _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 90.048 90.048 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 90.048 90.048 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 282 n n PA O2A NAD sing 283 n n PA O5B NAD sing 284 n n PA O3 NAD sing 285 n n O2A HOA2 NAD sing 286 n n O5B C5B NAD sing 287 n n C5B C4B NAD sing 288 n n C5B H51A NAD sing 289 n n C5B H52A NAD sing 290 n n C4B O4B NAD sing 291 n n C4B C3B NAD sing 292 n n C4B H4B NAD sing 293 n n O4B C1B NAD sing 294 n n C3B O3B NAD sing 295 n n C3B C2B NAD sing 296 n n C3B H3B NAD sing 297 n n O3B HO3A NAD sing 298 n n C2B O2B NAD sing 299 n n C2B C1B NAD sing 300 n n C2B H2B NAD sing 301 n n O2B HO2A NAD sing 302 n n C1B N9A NAD sing 303 n n C1B H1B NAD sing 304 n n N9A C8A NAD sing 305 n y N9A C4A NAD sing 306 n y C8A N7A NAD doub 307 n y C8A H8A NAD sing 308 n n N7A C5A NAD sing 309 n y C5A C6A NAD sing 310 n y C5A C4A NAD doub 311 n y C6A N6A NAD sing 312 n n C6A N1A NAD doub 313 n y N6A H61A NAD sing 314 n n N6A H62A NAD sing 315 n n N1A C2A NAD sing 316 n y C2A N3A NAD doub 317 n y C2A H2A NAD sing 318 n n N3A C4A NAD sing 319 n y O3 PN NAD sing 320 n n PN O1N NAD doub 321 n n PN O2N NAD sing 322 n n PN O5D NAD sing 323 n n O5D C5D NAD sing 324 n n C5D C4D NAD sing 325 n n C5D H51N NAD sing 326 n n C5D H52N NAD sing 327 n n C4D O4D NAD sing 328 n n C4D C3D NAD sing 329 n n C4D H4D NAD sing 330 n n O4D C1D NAD sing 331 n n C3D O3D NAD sing 332 n n C3D C2D NAD sing 333 n n C3D H3D NAD sing 334 n n O3D HO3N NAD sing 335 n n C2D O2D NAD sing 336 n n C2D C1D NAD sing 337 n n C2D H2D NAD sing 338 n n O2D HO2N NAD sing 339 n n C1D N1N NAD sing 340 n n C1D H1D NAD sing 341 n n N1N C2N NAD sing 342 n y N1N C6N NAD doub 343 n y C2N C3N NAD doub 344 n y C2N H2N NAD sing 345 n n C3N C7N NAD sing 346 n n C3N C4N NAD sing 347 n y C7N O7N NAD doub 348 n n C7N N7N NAD sing 349 n n N7N H71N NAD sing 350 n n N7N H72N NAD sing 351 n n C4N C5N NAD doub 352 n y C4N H4N NAD sing 353 n n C5N C6N NAD sing 354 n y C5N H5N NAD sing 355 n n C6N H6N NAD sing 356 n n # _atom_sites.entry_id 3FNG _atom_sites.fract_transf_matrix[1][1] 0.011105 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 300 300 NAD NAD . C 3 JPL A 1 400 400 JPL JPL . D 4 HOH A 1 270 1 HOH HOH . D 4 HOH A 2 271 2 HOH HOH . D 4 HOH A 3 272 3 HOH HOH . D 4 HOH A 4 273 4 HOH HOH . D 4 HOH A 5 274 5 HOH HOH . D 4 HOH A 6 275 6 HOH HOH . D 4 HOH A 7 276 7 HOH HOH . D 4 HOH A 8 277 8 HOH HOH . D 4 HOH A 9 278 9 HOH HOH . D 4 HOH A 10 279 10 HOH HOH . D 4 HOH A 11 280 11 HOH HOH . D 4 HOH A 12 281 12 HOH HOH . D 4 HOH A 13 282 13 HOH HOH . D 4 HOH A 14 283 14 HOH HOH . D 4 HOH A 15 284 15 HOH HOH . D 4 HOH A 16 285 16 HOH HOH . D 4 HOH A 17 286 17 HOH HOH . D 4 HOH A 18 287 18 HOH HOH . D 4 HOH A 19 288 19 HOH HOH . D 4 HOH A 20 289 20 HOH HOH . D 4 HOH A 21 290 21 HOH HOH . D 4 HOH A 22 291 22 HOH HOH . D 4 HOH A 23 292 23 HOH HOH . D 4 HOH A 24 293 24 HOH HOH . D 4 HOH A 25 294 25 HOH HOH . D 4 HOH A 26 295 26 HOH HOH . D 4 HOH A 27 296 27 HOH HOH . D 4 HOH A 28 297 28 HOH HOH . D 4 HOH A 29 298 29 HOH HOH . D 4 HOH A 30 299 30 HOH HOH . D 4 HOH A 31 301 31 HOH HOH . D 4 HOH A 32 302 32 HOH HOH . D 4 HOH A 33 303 33 HOH HOH . D 4 HOH A 34 304 34 HOH HOH . D 4 HOH A 35 305 35 HOH HOH . D 4 HOH A 36 306 36 HOH HOH . D 4 HOH A 37 307 37 HOH HOH . D 4 HOH A 38 308 38 HOH HOH . D 4 HOH A 39 309 39 HOH HOH . D 4 HOH A 40 310 40 HOH HOH . D 4 HOH A 41 311 41 HOH HOH . D 4 HOH A 42 312 42 HOH HOH . D 4 HOH A 43 313 43 HOH HOH . D 4 HOH A 44 314 44 HOH HOH . D 4 HOH A 45 315 45 HOH HOH . D 4 HOH A 46 316 46 HOH HOH . D 4 HOH A 47 317 47 HOH HOH . D 4 HOH A 48 318 48 HOH HOH . D 4 HOH A 49 319 49 HOH HOH . D 4 HOH A 50 320 50 HOH HOH . D 4 HOH A 51 321 51 HOH HOH . D 4 HOH A 52 322 52 HOH HOH . D 4 HOH A 53 323 53 HOH HOH . D 4 HOH A 54 324 54 HOH HOH . D 4 HOH A 55 325 55 HOH HOH . D 4 HOH A 56 326 56 HOH HOH . D 4 HOH A 57 327 57 HOH HOH . D 4 HOH A 58 328 58 HOH HOH . D 4 HOH A 59 329 59 HOH HOH . D 4 HOH A 60 330 60 HOH HOH . D 4 HOH A 61 331 61 HOH HOH . D 4 HOH A 62 332 62 HOH HOH . D 4 HOH A 63 333 63 HOH HOH . D 4 HOH A 64 334 64 HOH HOH . D 4 HOH A 65 335 65 HOH HOH . D 4 HOH A 66 336 66 HOH HOH . D 4 HOH A 67 337 67 HOH HOH . D 4 HOH A 68 338 68 HOH HOH . D 4 HOH A 69 339 69 HOH HOH . D 4 HOH A 70 340 70 HOH HOH . D 4 HOH A 71 341 71 HOH HOH . D 4 HOH A 72 342 72 HOH HOH . D 4 HOH A 73 343 73 HOH HOH . D 4 HOH A 74 344 74 HOH HOH . D 4 HOH A 75 345 75 HOH HOH . D 4 HOH A 76 346 76 HOH HOH . D 4 HOH A 77 347 77 HOH HOH . D 4 HOH A 78 348 78 HOH HOH . D 4 HOH A 79 349 79 HOH HOH . D 4 HOH A 80 350 80 HOH HOH . D 4 HOH A 81 351 81 HOH HOH . D 4 HOH A 82 352 82 HOH HOH . D 4 HOH A 83 353 83 HOH HOH . D 4 HOH A 84 354 84 HOH HOH . D 4 HOH A 85 355 85 HOH HOH . D 4 HOH A 86 356 86 HOH HOH . D 4 HOH A 87 357 87 HOH HOH . D 4 HOH A 88 358 88 HOH HOH . D 4 HOH A 89 359 89 HOH HOH . D 4 HOH A 90 360 90 HOH HOH . D 4 HOH A 91 361 91 HOH HOH . D 4 HOH A 92 362 92 HOH HOH . D 4 HOH A 93 363 93 HOH HOH . D 4 HOH A 94 364 94 HOH HOH . D 4 HOH A 95 365 95 HOH HOH . D 4 HOH A 96 366 96 HOH HOH . D 4 HOH A 97 367 97 HOH HOH . D 4 HOH A 98 368 98 HOH HOH . D 4 HOH A 99 369 99 HOH HOH . D 4 HOH A 100 370 100 HOH HOH . D 4 HOH A 101 371 101 HOH HOH . D 4 HOH A 102 372 102 HOH HOH . D 4 HOH A 103 373 103 HOH HOH . D 4 HOH A 104 374 104 HOH HOH . D 4 HOH A 105 375 105 HOH HOH . D 4 HOH A 106 376 106 HOH HOH . D 4 HOH A 107 377 107 HOH HOH . D 4 HOH A 108 378 108 HOH HOH . D 4 HOH A 109 379 109 HOH HOH . D 4 HOH A 110 380 110 HOH HOH . D 4 HOH A 111 381 111 HOH HOH . D 4 HOH A 112 382 112 HOH HOH . D 4 HOH A 113 383 113 HOH HOH . D 4 HOH A 114 384 114 HOH HOH . D 4 HOH A 115 385 115 HOH HOH . D 4 HOH A 116 386 116 HOH HOH . D 4 HOH A 117 387 117 HOH HOH . D 4 HOH A 118 388 118 HOH HOH . D 4 HOH A 119 389 119 HOH HOH . D 4 HOH A 120 390 120 HOH HOH . D 4 HOH A 121 391 121 HOH HOH . D 4 HOH A 122 392 122 HOH HOH . D 4 HOH A 123 393 123 HOH HOH . D 4 HOH A 124 394 124 HOH HOH . D 4 HOH A 125 395 125 HOH HOH . D 4 HOH A 126 396 126 HOH HOH . D 4 HOH A 127 397 127 HOH HOH . D 4 HOH A 128 398 128 HOH HOH . D 4 HOH A 129 399 129 HOH HOH . D 4 HOH A 130 401 130 HOH HOH . D 4 HOH A 131 402 131 HOH HOH . D 4 HOH A 132 403 132 HOH HOH . D 4 HOH A 133 404 133 HOH HOH . D 4 HOH A 134 405 134 HOH HOH . D 4 HOH A 135 406 135 HOH HOH . D 4 HOH A 136 407 136 HOH HOH . D 4 HOH A 137 408 137 HOH HOH . D 4 HOH A 138 409 138 HOH HOH . D 4 HOH A 139 410 139 HOH HOH . D 4 HOH A 140 411 140 HOH HOH . D 4 HOH A 141 412 141 HOH HOH . D 4 HOH A 142 413 142 HOH HOH . D 4 HOH A 143 414 143 HOH HOH . D 4 HOH A 144 415 144 HOH HOH . D 4 HOH A 145 416 145 HOH HOH . D 4 HOH A 146 417 146 HOH HOH . D 4 HOH A 147 418 147 HOH HOH . D 4 HOH A 148 419 148 HOH HOH . D 4 HOH A 149 420 149 HOH HOH . D 4 HOH A 150 421 150 HOH HOH . D 4 HOH A 151 422 151 HOH HOH . D 4 HOH A 152 423 152 HOH HOH . D 4 HOH A 153 424 153 HOH HOH . D 4 HOH A 154 425 154 HOH HOH . D 4 HOH A 155 426 155 HOH HOH . D 4 HOH A 156 427 156 HOH HOH . D 4 HOH A 157 428 157 HOH HOH . D 4 HOH A 158 429 158 HOH HOH . D 4 HOH A 159 430 159 HOH HOH . D 4 HOH A 160 431 160 HOH HOH . D 4 HOH A 161 432 161 HOH HOH . D 4 HOH A 162 433 162 HOH HOH . D 4 HOH A 163 434 163 HOH HOH . D 4 HOH A 164 435 164 HOH HOH . D 4 HOH A 165 436 165 HOH HOH . D 4 HOH A 166 437 166 HOH HOH . D 4 HOH A 167 438 167 HOH HOH . D 4 HOH A 168 439 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 19.731 47.197 -12.193 1 31.37 ? PA NAD 300 A 1 HETATM 2 O O1A NAD . . . B 2 19.401 48.37 -13.017 1 32.04 ? O1A NAD 300 A 1 HETATM 3 O O2A NAD . . . B 2 19.124 45.914 -12.614 1 31.38 ? O2A NAD 300 A 1 HETATM 4 O O5B NAD . . . B 2 19.515 47.426 -10.626 1 32.17 ? O5B NAD 300 A 1 HETATM 5 C C5B NAD . . . B 2 19.642 48.669 -9.983 1 31.29 ? C5B NAD 300 A 1 HETATM 6 C C4B NAD . . . B 2 18.449 48.776 -9.043 1 30.83 ? C4B NAD 300 A 1 HETATM 7 O O4B NAD . . . B 2 18.63 49.885 -8.167 1 31.52 ? O4B NAD 300 A 1 HETATM 8 C C3B NAD . . . B 2 17.143 49.029 -9.808 1 32.12 ? C3B NAD 300 A 1 HETATM 9 O O3B NAD . . . B 2 16.155 48.105 -9.413 1 30.94 ? O3B NAD 300 A 1 HETATM 10 C C2B NAD . . . B 2 16.699 50.379 -9.303 1 32.2 ? C2B NAD 300 A 1 HETATM 11 O O2B NAD . . . B 2 15.304 50.477 -9.218 1 34.08 ? O2B NAD 300 A 1 HETATM 12 C C1B NAD . . . B 2 17.344 50.408 -7.922 1 31.06 ? C1B NAD 300 A 1 HETATM 13 N N9A NAD . . . B 2 17.329 51.77 -7.356 1 27.09 ? N9A NAD 300 A 1 HETATM 14 C C8A NAD . . . B 2 17.805 52.92 -7.906 1 27.19 ? C8A NAD 300 A 1 HETATM 15 N N7A NAD . . . B 2 17.542 53.943 -7.043 1 26.34 ? N7A NAD 300 A 1 HETATM 16 C C5A NAD . . . B 2 16.868 53.446 -5.977 1 28.41 ? C5A NAD 300 A 1 HETATM 17 C C6A NAD . . . B 2 16.347 54.02 -4.82 1 29 ? C6A NAD 300 A 1 HETATM 18 N N6A NAD . . . B 2 16.169 55.334 -4.733 1 29.07 ? N6A NAD 300 A 1 HETATM 19 N N1A NAD . . . B 2 15.716 53.215 -3.907 1 29.98 ? N1A NAD 300 A 1 HETATM 20 C C2A NAD . . . B 2 15.574 51.856 -4.11 1 29.39 ? C2A NAD 300 A 1 HETATM 21 N N3A NAD . . . B 2 16.09 51.297 -5.254 1 29.88 ? N3A NAD 300 A 1 HETATM 22 C C4A NAD . . . B 2 16.727 52.081 -6.166 1 27.42 ? C4A NAD 300 A 1 HETATM 23 O O3 NAD . . . B 2 21.348 47.034 -12.261 1 31.89 ? O3 NAD 300 A 1 HETATM 24 P PN NAD . . . B 2 22.196 45.849 -11.553 1 30.95 ? PN NAD 300 A 1 HETATM 25 O O1N NAD . . . B 2 23.457 45.823 -12.35 1 30.97 ? O1N NAD 300 A 1 HETATM 26 O O2N NAD . . . B 2 21.5 44.566 -11.303 1 31.56 ? O2N NAD 300 A 1 HETATM 27 O O5D NAD . . . B 2 22.513 46.581 -10.14 1 29.88 ? O5D NAD 300 A 1 HETATM 28 C C5D NAD . . . B 2 22.432 45.945 -8.873 1 29.06 ? C5D NAD 300 A 1 HETATM 29 C C4D NAD . . . B 2 23.657 46.22 -7.978 1 26.81 ? C4D NAD 300 A 1 HETATM 30 O O4D NAD . . . B 2 24.757 45.47 -8.468 1 28.18 ? O4D NAD 300 A 1 HETATM 31 C C3D NAD . . . B 2 24.135 47.674 -7.944 1 26.85 ? C3D NAD 300 A 1 HETATM 32 O O3D NAD . . . B 2 24.598 48.011 -6.648 1 29.43 ? O3D NAD 300 A 1 HETATM 33 C C2D NAD . . . B 2 25.339 47.694 -8.853 1 26.72 ? C2D NAD 300 A 1 HETATM 34 O O2D NAD . . . B 2 26.18 48.789 -8.516 1 26.36 ? O2D NAD 300 A 1 HETATM 35 C C1D NAD . . . B 2 25.905 46.312 -8.56 1 26.67 ? C1D NAD 300 A 1 HETATM 36 N N1N NAD . . . B 2 26.848 45.737 -9.532 1 26.87 ? N1N NAD 300 A 1 HETATM 37 C C2N NAD . . . B 2 26.501 45.585 -10.846 1 26.64 ? C2N NAD 300 A 1 HETATM 38 C C3N NAD . . . B 2 27.408 45 -11.734 1 27.89 ? C3N NAD 300 A 1 HETATM 39 C C7N NAD . . . B 2 27.002 44.777 -13.154 1 29.06 ? C7N NAD 300 A 1 HETATM 40 O O7N NAD . . . B 2 28.035 44.547 -14.052 1 29.12 ? O7N NAD 300 A 1 HETATM 41 N N7N NAD . . . B 2 25.713 44.8 -13.524 1 29.31 ? N7N NAD 300 A 1 HETATM 42 C C4N NAD . . . B 2 28.678 44.584 -11.304 1 24.53 ? C4N NAD 300 A 1 HETATM 43 C C5N NAD . . . B 2 28.996 44.722 -9.948 1 23.1 ? C5N NAD 300 A 1 HETATM 44 C C6N NAD . . . B 2 28.077 45.299 -9.08 1 24.92 ? C6N NAD 300 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #