data_3FNH # _model_server_result.job_id 0RiTZDenSDmetFetAbqHxw _model_server_result.datetime_utc '2024-11-01 16:26:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fnh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 3FNH # _exptl.entry_id 3FNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FNH _cell.length_a 90.022 _cell.length_b 90.022 _cell.length_c 183.144 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_445 -y-1,-x-1,-z 0 -1 0 -1 0 0 0 0 -1 -90.022 -90.022 0 3 'crystal symmetry operation' 10_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -90.022 -90.022 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 279 n n PA O2A NAD sing 280 n n PA O5B NAD sing 281 n n PA O3 NAD sing 282 n n O2A HOA2 NAD sing 283 n n O5B C5B NAD sing 284 n n C5B C4B NAD sing 285 n n C5B H51A NAD sing 286 n n C5B H52A NAD sing 287 n n C4B O4B NAD sing 288 n n C4B C3B NAD sing 289 n n C4B H4B NAD sing 290 n n O4B C1B NAD sing 291 n n C3B O3B NAD sing 292 n n C3B C2B NAD sing 293 n n C3B H3B NAD sing 294 n n O3B HO3A NAD sing 295 n n C2B O2B NAD sing 296 n n C2B C1B NAD sing 297 n n C2B H2B NAD sing 298 n n O2B HO2A NAD sing 299 n n C1B N9A NAD sing 300 n n C1B H1B NAD sing 301 n n N9A C8A NAD sing 302 n y N9A C4A NAD sing 303 n y C8A N7A NAD doub 304 n y C8A H8A NAD sing 305 n n N7A C5A NAD sing 306 n y C5A C6A NAD sing 307 n y C5A C4A NAD doub 308 n y C6A N6A NAD sing 309 n n C6A N1A NAD doub 310 n y N6A H61A NAD sing 311 n n N6A H62A NAD sing 312 n n N1A C2A NAD sing 313 n y C2A N3A NAD doub 314 n y C2A H2A NAD sing 315 n n N3A C4A NAD sing 316 n y O3 PN NAD sing 317 n n PN O1N NAD doub 318 n n PN O2N NAD sing 319 n n PN O5D NAD sing 320 n n O5D C5D NAD sing 321 n n C5D C4D NAD sing 322 n n C5D H51N NAD sing 323 n n C5D H52N NAD sing 324 n n C4D O4D NAD sing 325 n n C4D C3D NAD sing 326 n n C4D H4D NAD sing 327 n n O4D C1D NAD sing 328 n n C3D O3D NAD sing 329 n n C3D C2D NAD sing 330 n n C3D H3D NAD sing 331 n n O3D HO3N NAD sing 332 n n C2D O2D NAD sing 333 n n C2D C1D NAD sing 334 n n C2D H2D NAD sing 335 n n O2D HO2N NAD sing 336 n n C1D N1N NAD sing 337 n n C1D H1D NAD sing 338 n n N1N C2N NAD sing 339 n y N1N C6N NAD doub 340 n y C2N C3N NAD doub 341 n y C2N H2N NAD sing 342 n n C3N C7N NAD sing 343 n n C3N C4N NAD sing 344 n y C7N O7N NAD doub 345 n n C7N N7N NAD sing 346 n n N7N H71N NAD sing 347 n n N7N H72N NAD sing 348 n n C4N C5N NAD doub 349 n y C4N H4N NAD sing 350 n n C5N C6N NAD sing 351 n y C5N H5N NAD sing 352 n n C6N H6N NAD sing 353 n n # _atom_sites.entry_id 3FNH _atom_sites.fract_transf_matrix[1][1] 0.011108 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011108 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 300 300 NAD NAD . C 3 JPJ A 1 400 400 JPJ JPJ . D 4 HOH A 1 270 1 HOH HOH . D 4 HOH A 2 271 2 HOH HOH . D 4 HOH A 3 272 3 HOH HOH . D 4 HOH A 4 273 4 HOH HOH . D 4 HOH A 5 274 5 HOH HOH . D 4 HOH A 6 275 6 HOH HOH . D 4 HOH A 7 276 7 HOH HOH . D 4 HOH A 8 277 8 HOH HOH . D 4 HOH A 9 278 9 HOH HOH . D 4 HOH A 10 279 10 HOH HOH . D 4 HOH A 11 280 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 -19.766 -47.133 -12.098 1 54.68 ? PA NAD 300 A 1 HETATM 2 O O1A NAD . . . B 2 -19.387 -48.28 -13.006 1 46.4 ? O1A NAD 300 A 1 HETATM 3 O O2A NAD . . . B 2 -19.322 -45.73 -12.464 1 48.15 ? O2A NAD 300 A 1 HETATM 4 O O5B NAD . . . B 2 -19.355 -47.501 -10.59 1 52.98 ? O5B NAD 300 A 1 HETATM 5 C C5B NAD . . . B 2 -19.382 -48.822 -10.099 1 52.24 ? C5B NAD 300 A 1 HETATM 6 C C4B NAD . . . B 2 -18.288 -48.822 -9.032 1 52.9 ? C4B NAD 300 A 1 HETATM 7 O O4B NAD . . . B 2 -18.457 -49.911 -8.149 1 55.21 ? O4B NAD 300 A 1 HETATM 8 C C3B NAD . . . B 2 -16.904 -48.998 -9.666 1 51.95 ? C3B NAD 300 A 1 HETATM 9 O O3B NAD . . . B 2 -16.096 -47.997 -9.132 1 49.35 ? O3B NAD 300 A 1 HETATM 10 C C2B NAD . . . B 2 -16.477 -50.392 -9.237 1 51.96 ? C2B NAD 300 A 1 HETATM 11 O O2B NAD . . . B 2 -15.082 -50.634 -9.192 1 51.23 ? O2B NAD 300 A 1 HETATM 12 C C1B NAD . . . B 2 -17.179 -50.455 -7.887 1 50.05 ? C1B NAD 300 A 1 HETATM 13 N N9A NAD . . . B 2 -17.195 -51.82 -7.366 1 48.98 ? N9A NAD 300 A 1 HETATM 14 C C8A NAD . . . B 2 -17.706 -52.969 -7.909 1 48.67 ? C8A NAD 300 A 1 HETATM 15 N N7A NAD . . . B 2 -17.441 -54.014 -7.051 1 47.81 ? N7A NAD 300 A 1 HETATM 16 C C5A NAD . . . B 2 -16.75 -53.524 -5.986 1 47.6 ? C5A NAD 300 A 1 HETATM 17 C C6A NAD . . . B 2 -16.225 -54.104 -4.83 1 46.07 ? C6A NAD 300 A 1 HETATM 18 N N6A NAD . . . B 2 -16.165 -55.432 -4.669 1 44.11 ? N6A NAD 300 A 1 HETATM 19 N N1A NAD . . . B 2 -15.586 -53.288 -3.924 1 46.4 ? N1A NAD 300 A 1 HETATM 20 C C2A NAD . . . B 2 -15.439 -51.932 -4.116 1 47.72 ? C2A NAD 300 A 1 HETATM 21 N N3A NAD . . . B 2 -15.947 -51.347 -5.259 1 50.53 ? N3A NAD 300 A 1 HETATM 22 C C4A NAD . . . B 2 -16.594 -52.143 -6.177 1 49.66 ? C4A NAD 300 A 1 HETATM 23 O O3 NAD . . . B 2 -21.387 -47.142 -11.881 1 55.57 ? O3 NAD 300 A 1 HETATM 24 P PN NAD . . . B 2 -22.199 -45.838 -11.372 1 54.75 ? PN NAD 300 A 1 HETATM 25 O O1N NAD . . . B 2 -23.278 -45.613 -12.353 1 55.86 ? O1N NAD 300 A 1 HETATM 26 O O2N NAD . . . B 2 -21.334 -44.656 -11.106 1 55.56 ? O2N NAD 300 A 1 HETATM 27 O O5D NAD . . . B 2 -22.615 -46.654 -10.034 1 52.8 ? O5D NAD 300 A 1 HETATM 28 C C5D NAD . . . B 2 -22.428 -46.084 -8.755 1 52.3 ? C5D NAD 300 A 1 HETATM 29 C C4D NAD . . . B 2 -23.589 -46.354 -7.819 1 53.56 ? C4D NAD 300 A 1 HETATM 30 O O4D NAD . . . B 2 -24.688 -45.636 -8.287 1 55.21 ? O4D NAD 300 A 1 HETATM 31 C C3D NAD . . . B 2 -24.079 -47.786 -7.794 1 55.52 ? C3D NAD 300 A 1 HETATM 32 O O3D NAD . . . B 2 -24.566 -48.028 -6.5 1 55.42 ? O3D NAD 300 A 1 HETATM 33 C C2D NAD . . . B 2 -25.266 -47.812 -8.718 1 55.46 ? C2D NAD 300 A 1 HETATM 34 O O2D NAD . . . B 2 -26.133 -48.843 -8.337 1 57.14 ? O2D NAD 300 A 1 HETATM 35 C C1D NAD . . . B 2 -25.823 -46.452 -8.439 1 56.23 ? C1D NAD 300 A 1 HETATM 36 N N1N NAD . . . B 2 -26.729 -45.865 -9.442 1 58.83 ? N1N NAD 300 A 1 HETATM 37 C C2N NAD . . . B 2 -26.43 -45.736 -10.785 1 59.81 ? C2N NAD 300 A 1 HETATM 38 C C3N NAD . . . B 2 -27.391 -45.126 -11.622 1 62.07 ? C3N NAD 300 A 1 HETATM 39 C C7N NAD . . . B 2 -27.083 -44.687 -13.025 1 63.15 ? C7N NAD 300 A 1 HETATM 40 O O7N NAD . . . B 2 -28.182 -44.284 -13.818 1 63.56 ? O7N NAD 300 A 1 HETATM 41 N N7N NAD . . . B 2 -25.833 -44.67 -13.482 1 63.2 ? N7N NAD 300 A 1 HETATM 42 C C4N NAD . . . B 2 -28.615 -44.667 -11.105 1 60.02 ? C4N NAD 300 A 1 HETATM 43 C C5N NAD . . . B 2 -28.883 -44.81 -9.746 1 60.21 ? C5N NAD 300 A 1 HETATM 44 C C6N NAD . . . B 2 -27.922 -45.396 -8.928 1 59.19 ? C6N NAD 300 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #