data_3FNR # _model_server_result.job_id rqkUTT9IoVhL62f2-x5wDw _model_server_result.datetime_utc '2024-11-25 20:40:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fnr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":539}' # _entry.id 3FNR # _exptl.entry_id 3FNR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FNR _cell.length_a 106.595 _cell.length_b 106.595 _cell.length_c 210.017 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FNR _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3FNR _atom_sites.fract_transf_matrix[1][1] 0.009381 _atom_sites.fract_transf_matrix[1][2] 0.005416 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1 1 SO4 SO4 . C 2 SO4 A 1 2 2 SO4 SO4 . D 2 SO4 A 1 3 3 SO4 SO4 . E 2 SO4 A 1 4 4 SO4 SO4 . F 3 GOL A 1 539 1 GOL GOL . G 4 HOH A 1 5 5 HOH HOH . G 4 HOH A 2 6 6 HOH HOH . G 4 HOH A 3 7 7 HOH HOH . G 4 HOH A 4 8 8 HOH HOH . G 4 HOH A 5 9 9 HOH HOH . G 4 HOH A 6 10 10 HOH HOH . G 4 HOH A 7 11 11 HOH HOH . G 4 HOH A 8 12 12 HOH HOH . G 4 HOH A 9 13 13 HOH HOH . G 4 HOH A 10 14 14 HOH HOH . G 4 HOH A 11 15 15 HOH HOH . G 4 HOH A 12 17 17 HOH HOH . G 4 HOH A 13 18 18 HOH HOH . G 4 HOH A 14 19 19 HOH HOH . G 4 HOH A 15 20 20 HOH HOH . G 4 HOH A 16 21 21 HOH HOH . G 4 HOH A 17 22 22 HOH HOH . G 4 HOH A 18 23 23 HOH HOH . G 4 HOH A 19 24 24 HOH HOH . G 4 HOH A 20 25 25 HOH HOH . G 4 HOH A 21 26 26 HOH HOH . G 4 HOH A 22 27 27 HOH HOH . G 4 HOH A 23 28 28 HOH HOH . G 4 HOH A 24 29 29 HOH HOH . G 4 HOH A 25 31 31 HOH HOH . G 4 HOH A 26 32 32 HOH HOH . G 4 HOH A 27 33 33 HOH HOH . G 4 HOH A 28 34 34 HOH HOH . G 4 HOH A 29 35 35 HOH HOH . G 4 HOH A 30 36 36 HOH HOH . G 4 HOH A 31 37 37 HOH HOH . G 4 HOH A 32 38 38 HOH HOH . G 4 HOH A 33 40 40 HOH HOH . G 4 HOH A 34 41 41 HOH HOH . G 4 HOH A 35 42 42 HOH HOH . G 4 HOH A 36 43 43 HOH HOH . G 4 HOH A 37 44 44 HOH HOH . G 4 HOH A 38 45 45 HOH HOH . G 4 HOH A 39 46 46 HOH HOH . G 4 HOH A 40 47 47 HOH HOH . G 4 HOH A 41 48 48 HOH HOH . G 4 HOH A 42 49 49 HOH HOH . G 4 HOH A 43 50 50 HOH HOH . G 4 HOH A 44 52 52 HOH HOH . G 4 HOH A 45 54 54 HOH HOH . G 4 HOH A 46 55 55 HOH HOH . G 4 HOH A 47 56 56 HOH HOH . G 4 HOH A 48 57 57 HOH HOH . G 4 HOH A 49 58 58 HOH HOH . G 4 HOH A 50 59 59 HOH HOH . G 4 HOH A 51 60 60 HOH HOH . G 4 HOH A 52 64 64 HOH HOH . G 4 HOH A 53 68 68 HOH HOH . G 4 HOH A 54 69 69 HOH HOH . G 4 HOH A 55 74 74 HOH HOH . G 4 HOH A 56 540 1 HOH HOH . G 4 HOH A 57 541 2 HOH HOH . G 4 HOH A 58 542 75 HOH HOH . G 4 HOH A 59 543 79 HOH HOH . G 4 HOH A 60 544 81 HOH HOH . G 4 HOH A 61 545 83 HOH HOH . G 4 HOH A 62 546 85 HOH HOH . G 4 HOH A 63 547 87 HOH HOH . G 4 HOH A 64 548 88 HOH HOH . G 4 HOH A 65 549 89 HOH HOH . G 4 HOH A 66 550 90 HOH HOH . G 4 HOH A 67 551 91 HOH HOH . G 4 HOH A 68 552 92 HOH HOH . G 4 HOH A 69 553 93 HOH HOH . G 4 HOH A 70 554 94 HOH HOH . G 4 HOH A 71 555 95 HOH HOH . G 4 HOH A 72 556 96 HOH HOH . G 4 HOH A 73 557 98 HOH HOH . G 4 HOH A 74 558 99 HOH HOH . G 4 HOH A 75 559 100 HOH HOH . G 4 HOH A 76 560 101 HOH HOH . G 4 HOH A 77 561 102 HOH HOH . G 4 HOH A 78 562 103 HOH HOH . G 4 HOH A 79 563 104 HOH HOH . G 4 HOH A 80 564 106 HOH HOH . G 4 HOH A 81 565 107 HOH HOH . G 4 HOH A 82 566 108 HOH HOH . G 4 HOH A 83 567 109 HOH HOH . G 4 HOH A 84 568 110 HOH HOH . G 4 HOH A 85 569 111 HOH HOH . G 4 HOH A 86 570 112 HOH HOH . G 4 HOH A 87 571 113 HOH HOH . G 4 HOH A 88 572 114 HOH HOH . G 4 HOH A 89 573 115 HOH HOH . G 4 HOH A 90 574 116 HOH HOH . G 4 HOH A 91 575 117 HOH HOH . G 4 HOH A 92 576 118 HOH HOH . G 4 HOH A 93 577 119 HOH HOH . G 4 HOH A 94 578 120 HOH HOH . G 4 HOH A 95 579 121 HOH HOH . G 4 HOH A 96 580 122 HOH HOH . G 4 HOH A 97 581 123 HOH HOH . G 4 HOH A 98 582 124 HOH HOH . G 4 HOH A 99 583 125 HOH HOH . G 4 HOH A 100 584 126 HOH HOH . G 4 HOH A 101 585 127 HOH HOH . G 4 HOH A 102 586 128 HOH HOH . G 4 HOH A 103 587 129 HOH HOH . G 4 HOH A 104 588 130 HOH HOH . G 4 HOH A 105 589 131 HOH HOH . G 4 HOH A 106 590 132 HOH HOH . G 4 HOH A 107 591 133 HOH HOH . G 4 HOH A 108 592 134 HOH HOH . G 4 HOH A 109 593 135 HOH HOH . G 4 HOH A 110 594 136 HOH HOH . G 4 HOH A 111 595 137 HOH HOH . G 4 HOH A 112 596 138 HOH HOH . G 4 HOH A 113 597 139 HOH HOH . G 4 HOH A 114 598 140 HOH HOH . G 4 HOH A 115 599 141 HOH HOH . G 4 HOH A 116 600 142 HOH HOH . G 4 HOH A 117 601 143 HOH HOH . G 4 HOH A 118 602 144 HOH HOH . G 4 HOH A 119 603 145 HOH HOH . G 4 HOH A 120 604 146 HOH HOH . G 4 HOH A 121 605 147 HOH HOH . G 4 HOH A 122 606 148 HOH HOH . G 4 HOH A 123 607 149 HOH HOH . G 4 HOH A 124 608 150 HOH HOH . G 4 HOH A 125 609 151 HOH HOH . G 4 HOH A 126 610 152 HOH HOH . G 4 HOH A 127 611 153 HOH HOH . G 4 HOH A 128 612 154 HOH HOH . G 4 HOH A 129 613 155 HOH HOH . G 4 HOH A 130 614 156 HOH HOH . G 4 HOH A 131 615 157 HOH HOH . G 4 HOH A 132 616 158 HOH HOH . G 4 HOH A 133 617 159 HOH HOH . G 4 HOH A 134 618 160 HOH HOH . G 4 HOH A 135 619 161 HOH HOH . G 4 HOH A 136 620 162 HOH HOH . G 4 HOH A 137 621 163 HOH HOH . G 4 HOH A 138 622 164 HOH HOH . G 4 HOH A 139 623 165 HOH HOH . G 4 HOH A 140 624 166 HOH HOH . G 4 HOH A 141 625 167 HOH HOH . G 4 HOH A 142 626 168 HOH HOH . G 4 HOH A 143 627 169 HOH HOH . G 4 HOH A 144 628 170 HOH HOH . G 4 HOH A 145 629 171 HOH HOH . G 4 HOH A 146 630 172 HOH HOH . G 4 HOH A 147 631 173 HOH HOH . G 4 HOH A 148 632 174 HOH HOH . G 4 HOH A 149 633 175 HOH HOH . G 4 HOH A 150 634 176 HOH HOH . G 4 HOH A 151 635 177 HOH HOH . G 4 HOH A 152 636 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 3 39.504 33.52 111.918 1 79.96 ? C1 GOL 539 A 1 HETATM 2 O O1 GOL . . . F 3 38.297 32.968 112.4 1 74.46 ? O1 GOL 539 A 1 HETATM 3 C C2 GOL . . . F 3 39.497 35.035 112.102 1 83.61 ? C2 GOL 539 A 1 HETATM 4 O O2 GOL . . . F 3 40.813 35.496 112.339 1 82.14 ? O2 GOL 539 A 1 HETATM 5 C C3 GOL . . . F 3 38.886 35.693 110.864 1 84.6 ? C3 GOL 539 A 1 HETATM 6 O O3 GOL . . . F 3 39.686 36.763 110.401 1 82.24 ? O3 GOL 539 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #