data_3FNU # _model_server_result.job_id EO5wSJLul8NLDasU786hOA _model_server_result.datetime_utc '2025-01-11 00:41:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":329}' # _entry.id 3FNU # _exptl.entry_id 3FNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 631.782 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FNU _cell.length_a 166.1 _cell.length_b 166.1 _cell.length_c 276.9 _cell.Z_PDB 64 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 45 1_555 A SG CYS 56 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf2 A SG CYS 253 A CYS 249 1_555 A SG CYS 289 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 B SG CYS 51 B CYS 45 1_555 B SG CYS 56 B CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf4 B SG CYS 253 B CYS 249 1_555 B SG CYS 289 B CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf5 C SG CYS 51 C CYS 45 1_555 C SG CYS 56 C CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf6 C SG CYS 253 C CYS 249 1_555 C SG CYS 289 C CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf7 D SG CYS 51 D CYS 45 1_555 D SG CYS 56 D CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf8 D SG CYS 253 D CYS 249 1_555 D SG CYS 289 D CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? # _chem_comp.formula 'C35 H41 N3 O6 S' _chem_comp.formula_weight 631.782 _chem_comp.id 006 _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms KNI-10006 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C48 006 sing 1 n n N2 C20 006 sing 2 n n N2 HN2 006 sing 3 n n C21 C20 006 sing 4 n n C20 C28 006 sing 5 n n C20 H20 006 sing 6 n n C28 O20 006 sing 7 n n O20 HO20 006 sing 8 n n C22 C21 006 sing 9 n n C21 H21 006 sing 10 n n C21 H21A 006 sing 11 n n C29 O21 006 doub 12 n n C27 C22 006 doub 13 n y C22 C23 006 sing 14 n y C24 C23 006 doub 15 n y C23 H23 006 sing 16 n n C25 C24 006 sing 17 n y C24 H24 006 sing 18 n n C26 C25 006 doub 19 n y C25 H25 006 sing 20 n n C26 C27 006 sing 21 n y C26 H26 006 sing 22 n n C27 H27 006 sing 23 n n C29 C28 006 sing 24 n n C28 H28 006 sing 25 n n N50 C29 006 sing 26 n n N30 C31 006 sing 27 n n N30 C55 006 sing 28 n n N30 HN30 006 sing 29 n n C35 O30 006 sing 30 n n O30 HO30 006 sing 31 n n C32 C31 006 sing 32 n n C31 C35 006 sing 33 n n C31 H31 006 sing 34 n n C33 C32 006 doub 35 n y C32 C36 006 sing 36 n y C34 C33 006 sing 37 n y C33 H33 006 sing 38 n n C34 C38 006 doub 39 n y C34 H34 006 sing 40 n n C39 C35 006 sing 41 n n C35 H35 006 sing 42 n n C37 C36 006 doub 43 n y C36 C39 006 sing 44 n n C38 C37 006 sing 45 n y C37 H37 006 sing 46 n n C38 H38 006 sing 47 n n C39 H39 006 sing 48 n n C39 H39A 006 sing 49 n n C40 C47 006 doub 50 n y C40 C41 006 sing 51 n y C40 H40 006 sing 52 n n C48 O40 006 doub 53 n n C41 C42 006 doub 54 n y C41 H41 006 sing 55 n n C45 O41 006 sing 56 n n O41 C49 006 sing 57 n n C42 C45 006 sing 58 n y C42 C43 006 sing 59 n n C43 H43 006 sing 60 n n C43 H43A 006 sing 61 n n C43 H43B 006 sing 62 n n C46 C44 006 sing 63 n n C44 H44 006 sing 64 n n C44 H44A 006 sing 65 n n C44 H44B 006 sing 66 n n C46 C45 006 doub 67 n y C47 C46 006 sing 68 n y C47 H47 006 sing 69 n n C49 C48 006 sing 70 n n C49 H49 006 sing 71 n n C49 H49A 006 sing 72 n n S50 C50 006 sing 73 n n C50 N50 006 sing 74 n n C50 H50 006 sing 75 n n C50 H50A 006 sing 76 n n C54 N50 006 sing 77 n n O50 C55 006 doub 78 n n C51 S50 006 sing 79 n n C53 C51 006 sing 80 n n C51 C54 006 sing 81 n n C51 C52 006 sing 82 n n C52 H52 006 sing 83 n n C52 H52A 006 sing 84 n n C52 H52B 006 sing 85 n n C53 H53 006 sing 86 n n C53 H53A 006 sing 87 n n C53 H53B 006 sing 88 n n C55 C54 006 sing 89 n n C54 H54 006 sing 90 n n # _atom_sites.entry_id 3FNU _atom_sites.fract_transf_matrix[1][1] 0.00602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 006 A 1 329 329 006 006 . F 2 006 B 1 329 329 006 006 . G 2 006 C 1 329 329 006 006 . H 2 006 D 1 329 329 006 006 . I 3 HOH A 1 330 330 HOH HOH . I 3 HOH A 2 331 331 HOH HOH . I 3 HOH A 3 332 332 HOH HOH . I 3 HOH A 4 333 333 HOH HOH . I 3 HOH A 5 334 334 HOH HOH . I 3 HOH A 6 335 335 HOH HOH . I 3 HOH A 7 336 336 HOH HOH . I 3 HOH A 8 337 337 HOH HOH . I 3 HOH A 9 338 338 HOH HOH . I 3 HOH A 10 339 339 HOH HOH . I 3 HOH A 11 340 340 HOH HOH . I 3 HOH A 12 341 341 HOH HOH . I 3 HOH A 13 342 342 HOH HOH . I 3 HOH A 14 343 343 HOH HOH . I 3 HOH A 15 344 344 HOH HOH . I 3 HOH A 16 345 345 HOH HOH . I 3 HOH A 17 346 346 HOH HOH . I 3 HOH A 18 347 347 HOH HOH . I 3 HOH A 19 348 348 HOH HOH . I 3 HOH A 20 349 349 HOH HOH . I 3 HOH A 21 350 350 HOH HOH . I 3 HOH A 22 351 351 HOH HOH . I 3 HOH A 23 352 352 HOH HOH . I 3 HOH A 24 353 353 HOH HOH . I 3 HOH A 25 354 354 HOH HOH . J 3 HOH B 1 330 330 HOH HOH . J 3 HOH B 2 331 331 HOH HOH . J 3 HOH B 3 332 332 HOH HOH . J 3 HOH B 4 333 333 HOH HOH . J 3 HOH B 5 334 334 HOH HOH . J 3 HOH B 6 335 335 HOH HOH . J 3 HOH B 7 336 336 HOH HOH . J 3 HOH B 8 337 337 HOH HOH . J 3 HOH B 9 338 338 HOH HOH . J 3 HOH B 10 339 339 HOH HOH . J 3 HOH B 11 340 340 HOH HOH . J 3 HOH B 12 341 341 HOH HOH . J 3 HOH B 13 342 342 HOH HOH . J 3 HOH B 14 343 343 HOH HOH . J 3 HOH B 15 344 344 HOH HOH . J 3 HOH B 16 345 345 HOH HOH . J 3 HOH B 17 346 346 HOH HOH . J 3 HOH B 18 347 347 HOH HOH . J 3 HOH B 19 348 348 HOH HOH . J 3 HOH B 20 349 349 HOH HOH . J 3 HOH B 21 350 350 HOH HOH . J 3 HOH B 22 351 351 HOH HOH . J 3 HOH B 23 352 352 HOH HOH . J 3 HOH B 24 353 353 HOH HOH . J 3 HOH B 25 354 354 HOH HOH . J 3 HOH B 26 355 355 HOH HOH . J 3 HOH B 27 356 356 HOH HOH . J 3 HOH B 28 357 357 HOH HOH . J 3 HOH B 29 358 358 HOH HOH . J 3 HOH B 30 359 359 HOH HOH . J 3 HOH B 31 360 360 HOH HOH . K 3 HOH C 1 330 330 HOH HOH . K 3 HOH C 2 331 331 HOH HOH . K 3 HOH C 3 332 332 HOH HOH . K 3 HOH C 4 333 333 HOH HOH . K 3 HOH C 5 334 334 HOH HOH . K 3 HOH C 6 335 335 HOH HOH . K 3 HOH C 7 336 336 HOH HOH . K 3 HOH C 8 337 337 HOH HOH . K 3 HOH C 9 338 338 HOH HOH . K 3 HOH C 10 339 339 HOH HOH . K 3 HOH C 11 340 340 HOH HOH . K 3 HOH C 12 341 341 HOH HOH . K 3 HOH C 13 342 342 HOH HOH . K 3 HOH C 14 343 343 HOH HOH . L 3 HOH D 1 330 330 HOH HOH . L 3 HOH D 2 331 331 HOH HOH . L 3 HOH D 3 332 332 HOH HOH . L 3 HOH D 4 333 333 HOH HOH . L 3 HOH D 5 334 334 HOH HOH . L 3 HOH D 6 335 335 HOH HOH . L 3 HOH D 7 336 336 HOH HOH . L 3 HOH D 8 337 337 HOH HOH . L 3 HOH D 9 338 338 HOH HOH . L 3 HOH D 10 339 339 HOH HOH . L 3 HOH D 11 340 340 HOH HOH . L 3 HOH D 12 341 341 HOH HOH . L 3 HOH D 13 342 342 HOH HOH . L 3 HOH D 14 343 343 HOH HOH . L 3 HOH D 15 344 344 HOH HOH . L 3 HOH D 16 345 345 HOH HOH . L 3 HOH D 17 346 346 HOH HOH . L 3 HOH D 18 347 347 HOH HOH . L 3 HOH D 19 348 348 HOH HOH . L 3 HOH D 20 349 349 HOH HOH . L 3 HOH D 21 350 350 HOH HOH . L 3 HOH D 22 351 351 HOH HOH . L 3 HOH D 23 352 352 HOH HOH . L 3 HOH D 24 353 353 HOH HOH . L 3 HOH D 25 354 354 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 006 . . . E 2 -8.586 -50.791 -75.488 1 162.96 ? N2 006 329 A 1 HETATM 2 C C20 006 . . . E 2 -7.689 -51.822 -74.952 1 167 ? C20 006 329 A 1 HETATM 3 O O20 006 . . . E 2 -6.237 -51.177 -73.103 1 170.63 ? O20 006 329 A 1 HETATM 4 C C21 006 . . . E 2 -7.506 -52.856 -76.063 1 166.18 ? C21 006 329 A 1 HETATM 5 O O21 006 . . . E 2 -6.746 -48.936 -75.065 1 173.36 ? O21 006 329 A 1 HETATM 6 C C22 006 . . . E 2 -8.668 -53.826 -76.1 1 165.63 ? C22 006 329 A 1 HETATM 7 C C23 006 . . . E 2 -8.734 -54.881 -75.181 1 165.48 ? C23 006 329 A 1 HETATM 8 C C24 006 . . . E 2 -9.806 -55.773 -75.219 1 165.2 ? C24 006 329 A 1 HETATM 9 C C25 006 . . . E 2 -10.807 -55.608 -76.178 1 165.22 ? C25 006 329 A 1 HETATM 10 C C26 006 . . . E 2 -10.74 -54.558 -77.097 1 164.98 ? C26 006 329 A 1 HETATM 11 C C27 006 . . . E 2 -9.67 -53.665 -77.059 1 165.11 ? C27 006 329 A 1 HETATM 12 C C28 006 . . . E 2 -6.326 -51.231 -74.538 1 171 ? C28 006 329 A 1 HETATM 13 C C29 006 . . . E 2 -5.967 -49.882 -75.139 1 173.21 ? C29 006 329 A 1 HETATM 14 N N30 006 . . . E 2 -5.024 -46.885 -78.142 1 174.65 ? N30 006 329 A 1 HETATM 15 O O30 006 . . . E 2 -5.653 -45.257 -76.096 1 175.26 ? O30 006 329 A 1 HETATM 16 C C31 006 . . . E 2 -4.093 -45.773 -77.936 1 175.21 ? C31 006 329 A 1 HETATM 17 C C32 006 . . . E 2 -4.237 -44.815 -79.05 1 175.88 ? C32 006 329 A 1 HETATM 18 C C33 006 . . . E 2 -4.232 -45.125 -80.411 1 175.96 ? C33 006 329 A 1 HETATM 19 C C34 006 . . . E 2 -4.383 -44.069 -81.316 1 176.08 ? C34 006 329 A 1 HETATM 20 C C35 006 . . . E 2 -4.391 -44.924 -76.684 1 175.38 ? C35 006 329 A 1 HETATM 21 C C36 006 . . . E 2 -4.384 -43.524 -78.6 1 176.12 ? C36 006 329 A 1 HETATM 22 C C37 006 . . . E 2 -4.534 -42.461 -79.489 1 176.07 ? C37 006 329 A 1 HETATM 23 C C38 006 . . . E 2 -4.529 -42.753 -80.857 1 176.05 ? C38 006 329 A 1 HETATM 24 C C39 006 . . . E 2 -4.367 -43.443 -77.091 1 175.77 ? C39 006 329 A 1 HETATM 25 C C40 006 . . . E 2 -14.432 -48.651 -78.957 1 145.93 ? C40 006 329 A 1 HETATM 26 O O40 006 . . . E 2 -10.278 -51.226 -74.049 1 158.73 ? O40 006 329 A 1 HETATM 27 C C41 006 . . . E 2 -14.279 -49.966 -78.513 1 146.4 ? C41 006 329 A 1 HETATM 28 O O41 006 . . . E 2 -10.951 -49.842 -76.967 1 151.9 ? O41 006 329 A 1 HETATM 29 C C42 006 . . . E 2 -13.119 -50.362 -77.846 1 147.18 ? C42 006 329 A 1 HETATM 30 C C43 006 . . . E 2 -12.996 -51.797 -77.387 1 145.83 ? C43 006 329 A 1 HETATM 31 C C44 006 . . . E 2 -11.201 -47.063 -77.866 1 146.78 ? C44 006 329 A 1 HETATM 32 C C45 006 . . . E 2 -12.101 -49.432 -77.617 1 148.53 ? C45 006 329 A 1 HETATM 33 C C46 006 . . . E 2 -12.26 -48.112 -78.072 1 147.13 ? C46 006 329 A 1 HETATM 34 C C47 006 . . . E 2 -13.422 -47.724 -78.736 1 146.08 ? C47 006 329 A 1 HETATM 35 C C48 006 . . . E 2 -9.81 -50.59 -74.982 1 159.13 ? C48 006 329 A 1 HETATM 36 C C49 006 . . . E 2 -10.648 -49.505 -75.612 1 155.97 ? C49 006 329 A 1 HETATM 37 C C50 006 . . . E 2 -3.807 -50.92 -75.819 1 174.07 ? C50 006 329 A 1 HETATM 38 N N50 006 . . . E 2 -4.756 -49.805 -75.731 1 173.77 ? N50 006 329 A 1 HETATM 39 O O50 006 . . . E 2 -5.994 -48.84 -77.943 1 174.55 ? O50 006 329 A 1 HETATM 40 S S50 006 . . . E 2 -2.22 -50.199 -75.976 1 174.58 ? S50 006 329 A 1 HETATM 41 C C51 006 . . . E 2 -2.69 -48.615 -76.561 1 174.38 ? C51 006 329 A 1 HETATM 42 C C52 006 . . . E 2 -2.211 -48.527 -78.011 1 174.38 ? C52 006 329 A 1 HETATM 43 C C53 006 . . . E 2 -1.994 -47.578 -75.679 1 174.2 ? C53 006 329 A 1 HETATM 44 C C54 006 . . . E 2 -4.239 -48.551 -76.36 1 174.28 ? C54 006 329 A 1 HETATM 45 C C55 006 . . . E 2 -5.113 -48.091 -77.542 1 174.53 ? C55 006 329 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 27 _model_server_stats.element_count 45 #