data_3FO0 # _model_server_result.job_id YDmQmR6X6iV6BaLpwPUPXg _model_server_result.datetime_utc '2025-01-10 14:27:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fo0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 3FO0 # _exptl.entry_id 3FO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FO0 _cell.length_a 84.071 _cell.length_b 87.001 _cell.length_c 59.419 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? disulf ? disulf2 A SG CYS 139 L CYS 139 1_555 A SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 148 H CYS 148 1_555 B SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 163 n n C1 C2 GOL sing 164 n n C1 H11 GOL sing 165 n n C1 H12 GOL sing 166 n n O1 HO1 GOL sing 167 n n C2 O2 GOL sing 168 n n C2 C3 GOL sing 169 n n C2 H2 GOL sing 170 n n O2 HO2 GOL sing 171 n n C3 O3 GOL sing 172 n n C3 H31 GOL sing 173 n n C3 H32 GOL sing 174 n n O3 HO3 GOL sing 175 n n # _atom_sites.entry_id 3FO0 _atom_sites.fract_transf_matrix[1][1] 0.011895 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011494 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01683 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BZH H 1 401 401 BZH BZH . D 4 GOL H 1 501 501 GOL GOL . E 5 HOH L 1 220 4 HOH HOH . E 5 HOH L 2 221 6 HOH HOH . E 5 HOH L 3 222 7 HOH HOH . E 5 HOH L 4 223 8 HOH HOH . E 5 HOH L 5 224 9 HOH HOH . E 5 HOH L 6 225 10 HOH HOH . E 5 HOH L 7 226 12 HOH HOH . E 5 HOH L 8 227 13 HOH HOH . E 5 HOH L 9 228 14 HOH HOH . E 5 HOH L 10 229 15 HOH HOH . E 5 HOH L 11 230 17 HOH HOH . E 5 HOH L 12 231 18 HOH HOH . E 5 HOH L 13 232 20 HOH HOH . E 5 HOH L 14 233 21 HOH HOH . E 5 HOH L 15 234 23 HOH HOH . E 5 HOH L 16 235 26 HOH HOH . E 5 HOH L 17 236 27 HOH HOH . E 5 HOH L 18 237 30 HOH HOH . E 5 HOH L 19 238 32 HOH HOH . E 5 HOH L 20 239 34 HOH HOH . E 5 HOH L 21 240 38 HOH HOH . E 5 HOH L 22 241 42 HOH HOH . E 5 HOH L 23 242 44 HOH HOH . E 5 HOH L 24 243 45 HOH HOH . E 5 HOH L 25 244 46 HOH HOH . E 5 HOH L 26 245 47 HOH HOH . E 5 HOH L 27 246 48 HOH HOH . F 5 HOH H 1 230 1 HOH HOH . F 5 HOH H 2 231 2 HOH HOH . F 5 HOH H 3 232 3 HOH HOH . F 5 HOH H 4 233 5 HOH HOH . F 5 HOH H 5 234 11 HOH HOH . F 5 HOH H 6 235 16 HOH HOH . F 5 HOH H 7 236 19 HOH HOH . F 5 HOH H 8 237 22 HOH HOH . F 5 HOH H 9 238 24 HOH HOH . F 5 HOH H 10 239 25 HOH HOH . F 5 HOH H 11 240 28 HOH HOH . F 5 HOH H 12 241 29 HOH HOH . F 5 HOH H 13 242 31 HOH HOH . F 5 HOH H 14 243 33 HOH HOH . F 5 HOH H 15 244 35 HOH HOH . F 5 HOH H 16 245 36 HOH HOH . F 5 HOH H 17 246 37 HOH HOH . F 5 HOH H 18 247 39 HOH HOH . F 5 HOH H 19 248 40 HOH HOH . F 5 HOH H 20 249 41 HOH HOH . F 5 HOH H 21 250 43 HOH HOH . F 5 HOH H 22 251 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 27.391 4.197 -33.561 1 66.23 ? C1 GOL 501 H 1 HETATM 2 O O1 GOL . . . D 4 27.563 3.332 -32.442 1 66.36 ? O1 GOL 501 H 1 HETATM 3 C C2 GOL . . . D 4 27.997 3.471 -34.766 1 66.74 ? C2 GOL 501 H 1 HETATM 4 O O2 GOL . . . D 4 27.003 3.568 -35.772 1 65.98 ? O2 GOL 501 H 1 HETATM 5 C C3 GOL . . . D 4 28.328 2.029 -34.329 1 67.3 ? C3 GOL 501 H 1 HETATM 6 O O3 GOL . . . D 4 28.429 1.129 -35.431 1 66.34 ? O3 GOL 501 H 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #