data_3FO1 # _model_server_result.job_id Io0Fx5gIOcEn6AgRGvwMQQ _model_server_result.datetime_utc '2024-11-16 09:55:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fo1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 3FO1 # _exptl.entry_id 3FO1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.265 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-[(2-AMINO-1H-BENZIMIDAZOL-6-YL)AMINO]-5-OXOPENTANOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.34 _cell.angle_gamma 90 _cell.entry_id 3FO1 _cell.length_a 59.602 _cell.length_b 87.021 _cell.length_c 84.401 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FO1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,B,C,D,E,F,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf2 A SG CYS 139 L CYS 139 1_555 A SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf4 B SG CYS 148 H CYS 148 1_555 B SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 C SG CYS 23 A CYS 23 1_555 C SG CYS 93 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf6 C SG CYS 139 A CYS 139 1_555 C SG CYS 199 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf7 D SG CYS 22 B CYS 22 1_555 D SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf8 D SG CYS 148 B CYS 148 1_555 D SG CYS 204 B CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? # _chem_comp.formula 'C12 H14 N4 O3' _chem_comp.formula_weight 262.265 _chem_comp.id BZH _chem_comp.mon_nstd_flag . _chem_comp.name '5-[(2-AMINO-1H-BENZIMIDAZOL-6-YL)AMINO]-5-OXOPENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 BZH doub 70 n y C8 C9 BZH sing 71 n y C8 H8 BZH sing 72 n n C9 N1 BZH sing 73 n y C9 C4 BZH doub 74 n y N1 C2 BZH sing 75 n y N1 HN1 BZH sing 76 n n C2 N10 BZH sing 77 n n C2 N3 BZH doub 78 n y N10 H101 BZH sing 79 n n N10 H102 BZH sing 80 n n N3 C4 BZH sing 81 n y C4 C5 BZH sing 82 n y C5 C6 BZH doub 83 n y C5 H5 BZH sing 84 n n C6 C7 BZH sing 85 n y C6 H6 BZH sing 86 n n C7 N11 BZH sing 87 n n N11 C12 BZH sing 88 n n N11 HN11 BZH sing 89 n n C12 C13 BZH sing 90 n n C12 O19 BZH doub 91 n n C13 C14 BZH sing 92 n n C13 H131 BZH sing 93 n n C13 H132 BZH sing 94 n n C14 C15 BZH sing 95 n n C14 H141 BZH sing 96 n n C14 H142 BZH sing 97 n n C15 C16 BZH sing 98 n n C15 H151 BZH sing 99 n n C15 H152 BZH sing 100 n n C16 O17 BZH doub 101 n n C16 O18 BZH sing 102 n n O18 HO18 BZH sing 103 n n # _atom_sites.entry_id 3FO1 _atom_sites.fract_transf_matrix[1][1] 0.016778 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000392 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BZH H 1 401 401 BZH BZH . F 3 BZH B 1 401 401 BZH BZH . G 4 HOH L 1 220 3 HOH HOH . G 4 HOH L 2 221 6 HOH HOH . G 4 HOH L 3 222 8 HOH HOH . G 4 HOH L 4 223 10 HOH HOH . G 4 HOH L 5 224 11 HOH HOH . G 4 HOH L 6 225 12 HOH HOH . G 4 HOH L 7 226 17 HOH HOH . G 4 HOH L 8 227 31 HOH HOH . G 4 HOH L 9 228 34 HOH HOH . G 4 HOH L 10 229 35 HOH HOH . G 4 HOH L 11 230 36 HOH HOH . G 4 HOH L 12 231 37 HOH HOH . G 4 HOH L 13 232 38 HOH HOH . G 4 HOH L 14 233 39 HOH HOH . G 4 HOH L 15 234 40 HOH HOH . G 4 HOH L 16 235 48 HOH HOH . G 4 HOH L 17 236 49 HOH HOH . G 4 HOH L 18 237 50 HOH HOH . G 4 HOH L 19 238 51 HOH HOH . G 4 HOH L 20 239 54 HOH HOH . G 4 HOH L 21 240 57 HOH HOH . G 4 HOH L 22 241 61 HOH HOH . G 4 HOH L 23 242 63 HOH HOH . G 4 HOH L 24 243 66 HOH HOH . G 4 HOH L 25 244 67 HOH HOH . G 4 HOH L 26 245 78 HOH HOH . G 4 HOH L 27 246 85 HOH HOH . G 4 HOH L 28 247 92 HOH HOH . G 4 HOH L 29 248 97 HOH HOH . G 4 HOH L 30 249 99 HOH HOH . G 4 HOH L 31 250 108 HOH HOH . G 4 HOH L 32 251 109 HOH HOH . G 4 HOH L 33 252 114 HOH HOH . G 4 HOH L 34 253 128 HOH HOH . G 4 HOH L 35 254 130 HOH HOH . G 4 HOH L 36 255 132 HOH HOH . G 4 HOH L 37 256 133 HOH HOH . G 4 HOH L 38 257 134 HOH HOH . G 4 HOH L 39 258 136 HOH HOH . G 4 HOH L 40 259 142 HOH HOH . G 4 HOH L 41 260 145 HOH HOH . G 4 HOH L 42 261 146 HOH HOH . G 4 HOH L 43 262 148 HOH HOH . G 4 HOH L 44 263 150 HOH HOH . G 4 HOH L 45 264 152 HOH HOH . G 4 HOH L 46 265 153 HOH HOH . G 4 HOH L 47 266 159 HOH HOH . G 4 HOH L 48 267 164 HOH HOH . H 4 HOH H 1 230 2 HOH HOH . H 4 HOH H 2 231 5 HOH HOH . H 4 HOH H 3 232 9 HOH HOH . H 4 HOH H 4 233 15 HOH HOH . H 4 HOH H 5 234 18 HOH HOH . H 4 HOH H 6 235 27 HOH HOH . H 4 HOH H 7 236 28 HOH HOH . H 4 HOH H 8 237 29 HOH HOH . H 4 HOH H 9 238 41 HOH HOH . H 4 HOH H 10 239 44 HOH HOH . H 4 HOH H 11 240 47 HOH HOH . H 4 HOH H 12 241 55 HOH HOH . H 4 HOH H 13 242 56 HOH HOH . H 4 HOH H 14 243 71 HOH HOH . H 4 HOH H 15 244 82 HOH HOH . H 4 HOH H 16 245 86 HOH HOH . H 4 HOH H 17 246 87 HOH HOH . H 4 HOH H 18 247 89 HOH HOH . H 4 HOH H 19 248 94 HOH HOH . H 4 HOH H 20 249 98 HOH HOH . H 4 HOH H 21 250 101 HOH HOH . H 4 HOH H 22 251 105 HOH HOH . H 4 HOH H 23 252 107 HOH HOH . H 4 HOH H 24 253 111 HOH HOH . H 4 HOH H 25 254 117 HOH HOH . H 4 HOH H 26 255 119 HOH HOH . H 4 HOH H 27 256 120 HOH HOH . H 4 HOH H 28 257 121 HOH HOH . H 4 HOH H 29 258 126 HOH HOH . H 4 HOH H 30 259 143 HOH HOH . H 4 HOH H 31 260 147 HOH HOH . H 4 HOH H 32 261 151 HOH HOH . H 4 HOH H 33 262 154 HOH HOH . H 4 HOH H 34 263 160 HOH HOH . H 4 HOH H 35 264 165 HOH HOH . I 4 HOH A 1 220 4 HOH HOH . I 4 HOH A 2 221 13 HOH HOH . I 4 HOH A 3 222 14 HOH HOH . I 4 HOH A 4 223 16 HOH HOH . I 4 HOH A 5 224 20 HOH HOH . I 4 HOH A 6 225 21 HOH HOH . I 4 HOH A 7 226 22 HOH HOH . I 4 HOH A 8 227 23 HOH HOH . I 4 HOH A 9 228 25 HOH HOH . I 4 HOH A 10 229 33 HOH HOH . I 4 HOH A 11 230 43 HOH HOH . I 4 HOH A 12 231 52 HOH HOH . I 4 HOH A 13 232 53 HOH HOH . I 4 HOH A 14 233 59 HOH HOH . I 4 HOH A 15 234 60 HOH HOH . I 4 HOH A 16 235 62 HOH HOH . I 4 HOH A 17 236 64 HOH HOH . I 4 HOH A 18 237 65 HOH HOH . I 4 HOH A 19 238 68 HOH HOH . I 4 HOH A 20 239 70 HOH HOH . I 4 HOH A 21 240 73 HOH HOH . I 4 HOH A 22 241 75 HOH HOH . I 4 HOH A 23 242 76 HOH HOH . I 4 HOH A 24 243 79 HOH HOH . I 4 HOH A 25 244 80 HOH HOH . I 4 HOH A 26 245 81 HOH HOH . I 4 HOH A 27 246 84 HOH HOH . I 4 HOH A 28 247 88 HOH HOH . I 4 HOH A 29 248 90 HOH HOH . I 4 HOH A 30 249 91 HOH HOH . I 4 HOH A 31 250 100 HOH HOH . I 4 HOH A 32 251 102 HOH HOH . I 4 HOH A 33 252 103 HOH HOH . I 4 HOH A 34 253 104 HOH HOH . I 4 HOH A 35 254 106 HOH HOH . I 4 HOH A 36 255 112 HOH HOH . I 4 HOH A 37 256 113 HOH HOH . I 4 HOH A 38 257 115 HOH HOH . I 4 HOH A 39 258 118 HOH HOH . I 4 HOH A 40 259 122 HOH HOH . I 4 HOH A 41 260 124 HOH HOH . I 4 HOH A 42 261 125 HOH HOH . I 4 HOH A 43 262 127 HOH HOH . I 4 HOH A 44 263 129 HOH HOH . I 4 HOH A 45 264 131 HOH HOH . I 4 HOH A 46 265 135 HOH HOH . I 4 HOH A 47 266 137 HOH HOH . I 4 HOH A 48 267 144 HOH HOH . I 4 HOH A 49 268 157 HOH HOH . I 4 HOH A 50 269 158 HOH HOH . I 4 HOH A 51 270 161 HOH HOH . J 4 HOH B 1 230 1 HOH HOH . J 4 HOH B 2 231 7 HOH HOH . J 4 HOH B 3 232 19 HOH HOH . J 4 HOH B 4 233 24 HOH HOH . J 4 HOH B 5 234 26 HOH HOH . J 4 HOH B 6 235 30 HOH HOH . J 4 HOH B 7 236 32 HOH HOH . J 4 HOH B 8 237 42 HOH HOH . J 4 HOH B 9 238 45 HOH HOH . J 4 HOH B 10 239 46 HOH HOH . J 4 HOH B 11 240 58 HOH HOH . J 4 HOH B 12 241 69 HOH HOH . J 4 HOH B 13 242 72 HOH HOH . J 4 HOH B 14 243 74 HOH HOH . J 4 HOH B 15 244 77 HOH HOH . J 4 HOH B 16 245 83 HOH HOH . J 4 HOH B 17 246 93 HOH HOH . J 4 HOH B 18 247 95 HOH HOH . J 4 HOH B 19 248 96 HOH HOH . J 4 HOH B 20 249 110 HOH HOH . J 4 HOH B 21 250 116 HOH HOH . J 4 HOH B 22 251 123 HOH HOH . J 4 HOH B 23 252 138 HOH HOH . J 4 HOH B 24 253 139 HOH HOH . J 4 HOH B 25 254 140 HOH HOH . J 4 HOH B 26 255 141 HOH HOH . J 4 HOH B 27 256 149 HOH HOH . J 4 HOH B 28 257 155 HOH HOH . J 4 HOH B 29 258 156 HOH HOH . J 4 HOH B 30 259 162 HOH HOH . J 4 HOH B 31 260 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 BZH . . . F 3 35.765 -5.748 1.914 1 32.26 ? C8 BZH 401 B 1 HETATM 2 C C9 BZH . . . F 3 34.673 -4.921 1.698 1 32.45 ? C9 BZH 401 B 1 HETATM 3 N N1 BZH . . . F 3 34.535 -3.594 1.541 1 32.3 ? N1 BZH 401 B 1 HETATM 4 C C2 BZH . . . F 3 33.205 -3.381 1.365 1 33.18 ? C2 BZH 401 B 1 HETATM 5 N N10 BZH . . . F 3 32.644 -2.213 1.158 1 32.46 ? N10 BZH 401 B 1 HETATM 6 N N3 BZH . . . F 3 32.52 -4.5 1.366 1 32.62 ? N3 BZH 401 B 1 HETATM 7 C C4 BZH . . . F 3 33.405 -5.487 1.581 1 35.42 ? C4 BZH 401 B 1 HETATM 8 C C5 BZH . . . F 3 33.235 -6.868 1.688 1 36 ? C5 BZH 401 B 1 HETATM 9 C C6 BZH . . . F 3 34.332 -7.686 1.921 1 33.66 ? C6 BZH 401 B 1 HETATM 10 C C7 BZH . . . F 3 35.604 -7.123 2.016 1 34.72 ? C7 BZH 401 B 1 HETATM 11 N N11 BZH . . . F 3 36.714 -7.882 2.255 1 35.47 ? N11 BZH 401 B 1 HETATM 12 C C12 BZH . . . F 3 36.863 -9.206 2.019 1 38.71 ? C12 BZH 401 B 1 HETATM 13 O O19 BZH . . . F 3 36.018 -9.94 1.534 1 39.81 ? O19 BZH 401 B 1 HETATM 14 C C13 BZH . . . F 3 38.229 -9.78 2.419 1 41.67 ? C13 BZH 401 B 1 HETATM 15 C C14 BZH . . . F 3 38.496 -11.166 1.877 1 45.37 ? C14 BZH 401 B 1 HETATM 16 C C15 BZH . . . F 3 39.928 -11.62 2.231 1 51.46 ? C15 BZH 401 B 1 HETATM 17 C C16 BZH . . . F 3 40.379 -12.686 1.214 1 54.88 ? C16 BZH 401 B 1 HETATM 18 O O18 BZH . . . F 3 39.813 -13.805 1.326 1 56.49 ? O18 BZH 401 B 1 HETATM 19 O O17 BZH . . . F 3 41.247 -12.357 0.355 1 54.96 ? O17 BZH 401 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 19 #