data_3FOP # _model_server_result.job_id FoSPhdaFyU3j87GhHcIxJg _model_server_result.datetime_utc '2024-12-14 23:51:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":110}' # _entry.id 3FOP # _exptl.entry_id 3FOP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FOP _cell.length_a 104.897 _cell.length_b 104.897 _cell.length_c 107.925 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FOP _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 A,C,D,E,F,K 3 1 A,B,C,D,E,F,G,H,I,J,K,L 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -52.4485 90.843467 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N ALA 1 A ALA 1 1_555 F NI NI . A NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A O ALA 1 A ALA 1 1_555 F NI NI . A NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc3 A SD MET 7 A MET 7 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc4 A OD2 ASP 39 A ASP 39 1_555 F NI NI . A NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc5 A NE2 HIS 102 A HIS 102 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc6 E NI NI . A NI 109 1_555 K O HOH . A HOH 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc7 E NI NI . A NI 109 1_555 K O HOH . A HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc8 E NI NI . A NI 109 1_555 D NAK PXX . A PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc9 E NI NI . A NI 109 1_555 D NAJ PXX . A PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 B N ALA 1 B ALA 1 1_555 J NI NI . B NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc11 B O ALA 1 B ALA 1 1_555 J NI NI . B NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc12 B SD MET 7 B MET 7 1_555 G FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc13 B OD2 ASP 39 B ASP 39 1_555 J NI NI . B NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc14 B NE2 HIS 102 B HIS 102 1_555 G FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc15 I NI NI . B NI 109 1_555 L O HOH . B HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc16 I NI NI . B NI 109 1_555 H NAK PXX . B PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc17 I NI NI . B NI 109 1_555 H NAJ PXX . B PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3FOP _atom_sites.fract_transf_matrix[1][1] 0.009533 _atom_sites.fract_transf_matrix[1][2] 0.005504 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 150 150 HEM HEM . D 3 PXX A 1 151 151 PXX PXX . E 4 NI A 1 109 109 NI NI . F 4 NI A 1 110 110 NI NI . G 2 HEM B 1 150 150 HEM HEM . H 3 PXX B 1 151 151 PXX PXX . I 4 NI B 1 109 109 NI NI . J 4 NI B 1 110 110 NI NI . K 5 HOH A 1 111 111 HOH HOH . K 5 HOH A 2 112 112 HOH HOH . K 5 HOH A 3 113 113 HOH HOH . K 5 HOH A 4 114 114 HOH HOH . K 5 HOH A 5 115 115 HOH HOH . K 5 HOH A 6 116 116 HOH HOH . K 5 HOH A 7 117 117 HOH HOH . K 5 HOH A 8 118 118 HOH HOH . K 5 HOH A 9 119 119 HOH HOH . K 5 HOH A 10 120 120 HOH HOH . K 5 HOH A 11 121 121 HOH HOH . L 5 HOH B 1 111 111 HOH HOH . L 5 HOH B 2 112 112 HOH HOH . L 5 HOH B 3 113 113 HOH HOH . L 5 HOH B 4 114 114 HOH HOH . L 5 HOH B 5 115 115 HOH HOH . L 5 HOH B 6 116 116 HOH HOH . L 5 HOH B 7 117 117 HOH HOH . L 5 HOH B 8 118 118 HOH HOH . L 5 HOH B 9 119 119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -61.125 _atom_site.Cartn_y 14.125 _atom_site.Cartn_z 4.625 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 110 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #