data_3FOP # _model_server_result.job_id hz2vQF0NEyE1Vyncvf14dA _model_server_result.datetime_utc '2024-12-14 23:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":150}' # _entry.id 3FOP # _exptl.entry_id 3FOP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FOP _cell.length_a 104.897 _cell.length_b 104.897 _cell.length_c 107.925 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FOP _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 A,C,D,E,F,K 3 1 A,B,C,D,E,F,G,H,I,J,K,L 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -52.4485 90.843467 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N ALA 1 A ALA 1 1_555 F NI NI . A NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A O ALA 1 A ALA 1 1_555 F NI NI . A NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc3 A SD MET 7 A MET 7 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc4 A OD2 ASP 39 A ASP 39 1_555 F NI NI . A NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc5 A NE2 HIS 102 A HIS 102 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc6 E NI NI . A NI 109 1_555 K O HOH . A HOH 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc7 E NI NI . A NI 109 1_555 K O HOH . A HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc8 E NI NI . A NI 109 1_555 D NAK PXX . A PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc9 E NI NI . A NI 109 1_555 D NAJ PXX . A PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 B N ALA 1 B ALA 1 1_555 J NI NI . B NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc11 B O ALA 1 B ALA 1 1_555 J NI NI . B NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc12 B SD MET 7 B MET 7 1_555 G FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc13 B OD2 ASP 39 B ASP 39 1_555 J NI NI . B NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc14 B NE2 HIS 102 B HIS 102 1_555 G FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc15 I NI NI . B NI 109 1_555 L O HOH . B HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc16 I NI NI . B NI 109 1_555 H NAK PXX . B PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc17 I NI NI . B NI 109 1_555 H NAJ PXX . B PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 3FOP _atom_sites.fract_transf_matrix[1][1] 0.009533 _atom_sites.fract_transf_matrix[1][2] 0.005504 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 150 150 HEM HEM . D 3 PXX A 1 151 151 PXX PXX . E 4 NI A 1 109 109 NI NI . F 4 NI A 1 110 110 NI NI . G 2 HEM B 1 150 150 HEM HEM . H 3 PXX B 1 151 151 PXX PXX . I 4 NI B 1 109 109 NI NI . J 4 NI B 1 110 110 NI NI . K 5 HOH A 1 111 111 HOH HOH . K 5 HOH A 2 112 112 HOH HOH . K 5 HOH A 3 113 113 HOH HOH . K 5 HOH A 4 114 114 HOH HOH . K 5 HOH A 5 115 115 HOH HOH . K 5 HOH A 6 116 116 HOH HOH . K 5 HOH A 7 117 117 HOH HOH . K 5 HOH A 8 118 118 HOH HOH . K 5 HOH A 9 119 119 HOH HOH . K 5 HOH A 10 120 120 HOH HOH . K 5 HOH A 11 121 121 HOH HOH . L 5 HOH B 1 111 111 HOH HOH . L 5 HOH B 2 112 112 HOH HOH . L 5 HOH B 3 113 113 HOH HOH . L 5 HOH B 4 114 114 HOH HOH . L 5 HOH B 5 115 115 HOH HOH . L 5 HOH B 6 116 116 HOH HOH . L 5 HOH B 7 117 117 HOH HOH . L 5 HOH B 8 118 118 HOH HOH . L 5 HOH B 9 119 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -57.977 4.499 14.307 1 45 ? CHA HEM 150 A 1 HETATM 2 C CHB HEM . . . C 2 -53.17 4.391 14.037 1 44.95 ? CHB HEM 150 A 1 HETATM 3 C CHC HEM . . . C 2 -53.121 8.836 16.041 1 43.64 ? CHC HEM 150 A 1 HETATM 4 C CHD HEM . . . C 2 -57.902 8.713 16.728 1 43.42 ? CHD HEM 150 A 1 HETATM 5 C C1A HEM . . . C 2 -56.692 4.059 14.069 1 45.72 ? C1A HEM 150 A 1 HETATM 6 C C2A HEM . . . C 2 -56.329 2.752 13.517 1 46.47 ? C2A HEM 150 A 1 HETATM 7 C C3A HEM . . . C 2 -54.99 2.727 13.44 1 45.9 ? C3A HEM 150 A 1 HETATM 8 C C4A HEM . . . C 2 -54.48 4.002 13.933 1 45.03 ? C4A HEM 150 A 1 HETATM 9 C CMA HEM . . . C 2 -54.141 1.549 12.921 1 45.31 ? CMA HEM 150 A 1 HETATM 10 C CAA HEM . . . C 2 -57.315 1.615 13.094 1 46.96 ? CAA HEM 150 A 1 HETATM 11 C CBA HEM . . . C 2 -58.1 2.056 11.849 1 48.57 ? CBA HEM 150 A 1 HETATM 12 C CGA HEM . . . C 2 -59.35 1.262 11.507 1 50.8 ? CGA HEM 150 A 1 HETATM 13 O O1A HEM . . . C 2 -59.678 1.166 10.287 1 51.63 ? O1A HEM 150 A 1 HETATM 14 O O2A HEM . . . C 2 -60.047 0.738 12.423 1 52.39 ? O2A HEM 150 A 1 HETATM 15 C C1B HEM . . . C 2 -52.764 5.593 14.595 1 45.39 ? C1B HEM 150 A 1 HETATM 16 C C2B HEM . . . C 2 -51.379 5.98 14.812 1 45.29 ? C2B HEM 150 A 1 HETATM 17 C C3B HEM . . . C 2 -51.363 7.197 15.362 1 44.22 ? C3B HEM 150 A 1 HETATM 18 C C4B HEM . . . C 2 -52.735 7.635 15.507 1 43.5 ? C4B HEM 150 A 1 HETATM 19 C CMB HEM . . . C 2 -50.158 5.105 14.463 1 45.32 ? CMB HEM 150 A 1 HETATM 20 C CAB HEM . . . C 2 -50.108 7.989 15.777 1 43.91 ? CAB HEM 150 A 1 HETATM 21 C CBB HEM . . . C 2 -49.34 8.513 14.817 1 44.28 ? CBB HEM 150 A 1 HETATM 22 C C1C HEM . . . C 2 -54.398 9.146 16.461 1 43.44 ? C1C HEM 150 A 1 HETATM 23 C C2C HEM . . . C 2 -54.756 10.283 17.295 1 43.1 ? C2C HEM 150 A 1 HETATM 24 C C3C HEM . . . C 2 -56.079 10.258 17.486 1 43.47 ? C3C HEM 150 A 1 HETATM 25 C C4C HEM . . . C 2 -56.594 9.096 16.781 1 42.89 ? C4C HEM 150 A 1 HETATM 26 C CMC HEM . . . C 2 -53.772 11.323 17.855 1 42.07 ? CMC HEM 150 A 1 HETATM 27 C CAC HEM . . . C 2 -56.906 11.265 18.33 1 43.18 ? CAC HEM 150 A 1 HETATM 28 C CBC HEM . . . C 2 -56.571 12.564 18.297 1 42.34 ? CBC HEM 150 A 1 HETATM 29 C C1D HEM . . . C 2 -58.363 7.569 16.145 1 42.62 ? C1D HEM 150 A 1 HETATM 30 C C2D HEM . . . C 2 -59.739 7.16 16.158 1 43.22 ? C2D HEM 150 A 1 HETATM 31 C C3D HEM . . . C 2 -59.78 5.838 15.393 1 44.14 ? C3D HEM 150 A 1 HETATM 32 C C4D HEM . . . C 2 -58.399 5.602 15.018 1 44.02 ? C4D HEM 150 A 1 HETATM 33 C CMD HEM . . . C 2 -60.927 7.906 16.805 1 44.18 ? CMD HEM 150 A 1 HETATM 34 C CAD HEM . . . C 2 -61.035 4.956 15.122 1 44.64 ? CAD HEM 150 A 1 HETATM 35 C CBD HEM . . . C 2 -61.294 4.616 13.648 1 46.25 ? CBD HEM 150 A 1 HETATM 36 C CGD HEM . . . C 2 -62.776 4.592 13.336 1 47.86 ? CGD HEM 150 A 1 HETATM 37 O O1D HEM . . . C 2 -63.606 4.314 14.239 1 48.92 ? O1D HEM 150 A 1 HETATM 38 O O2D HEM . . . C 2 -63.155 4.854 12.166 1 49.19 ? O2D HEM 150 A 1 HETATM 39 N NA HEM . . . C 2 -55.544 4.797 14.31 1 44.02 ? NA HEM 150 A 1 HETATM 40 N NB HEM . . . C 2 -53.579 6.638 15.034 1 43.62 ? NB HEM 150 A 1 HETATM 41 N NC HEM . . . C 2 -55.553 8.437 16.161 1 42.83 ? NC HEM 150 A 1 HETATM 42 N ND HEM . . . C 2 -57.601 6.643 15.468 1 42.54 ? ND HEM 150 A 1 HETATM 43 FE FE HEM . . . C 2 -55.611 6.63 15.251 1 42.16 ? FE HEM 150 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #