data_3FOP # _model_server_result.job_id 1AOxkFlejZzbQ7fBkLzyPw _model_server_result.datetime_utc '2024-12-14 23:40:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":150}' # _entry.id 3FOP # _exptl.entry_id 3FOP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FOP _cell.length_a 104.897 _cell.length_b 104.897 _cell.length_c 107.925 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FOP _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 software_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 ? trimeric 3 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 A,C,D,E,F,K 3 1 A,B,C,D,E,F,G,H,I,J,K,L 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -52.4485 90.843467 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N ALA 1 A ALA 1 1_555 F NI NI . A NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A O ALA 1 A ALA 1 1_555 F NI NI . A NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc3 A SD MET 7 A MET 7 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc4 A OD2 ASP 39 A ASP 39 1_555 F NI NI . A NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc5 A NE2 HIS 102 A HIS 102 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc6 E NI NI . A NI 109 1_555 K O HOH . A HOH 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc7 E NI NI . A NI 109 1_555 K O HOH . A HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc8 E NI NI . A NI 109 1_555 D NAK PXX . A PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc9 E NI NI . A NI 109 1_555 D NAJ PXX . A PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc10 B N ALA 1 B ALA 1 1_555 J NI NI . B NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc11 B O ALA 1 B ALA 1 1_555 J NI NI . B NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc12 B SD MET 7 B MET 7 1_555 G FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc13 B OD2 ASP 39 B ASP 39 1_555 J NI NI . B NI 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc14 B NE2 HIS 102 B HIS 102 1_555 G FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc15 I NI NI . B NI 109 1_555 L O HOH . B HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc16 I NI NI . B NI 109 1_555 H NAK PXX . B PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc17 I NI NI . B NI 109 1_555 H NAJ PXX . B PXX 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 3FOP _atom_sites.fract_transf_matrix[1][1] 0.009533 _atom_sites.fract_transf_matrix[1][2] 0.005504 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011008 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 150 150 HEM HEM . D 3 PXX A 1 151 151 PXX PXX . E 4 NI A 1 109 109 NI NI . F 4 NI A 1 110 110 NI NI . G 2 HEM B 1 150 150 HEM HEM . H 3 PXX B 1 151 151 PXX PXX . I 4 NI B 1 109 109 NI NI . J 4 NI B 1 110 110 NI NI . K 5 HOH A 1 111 111 HOH HOH . K 5 HOH A 2 112 112 HOH HOH . K 5 HOH A 3 113 113 HOH HOH . K 5 HOH A 4 114 114 HOH HOH . K 5 HOH A 5 115 115 HOH HOH . K 5 HOH A 6 116 116 HOH HOH . K 5 HOH A 7 117 117 HOH HOH . K 5 HOH A 8 118 118 HOH HOH . K 5 HOH A 9 119 119 HOH HOH . K 5 HOH A 10 120 120 HOH HOH . K 5 HOH A 11 121 121 HOH HOH . L 5 HOH B 1 111 111 HOH HOH . L 5 HOH B 2 112 112 HOH HOH . L 5 HOH B 3 113 113 HOH HOH . L 5 HOH B 4 114 114 HOH HOH . L 5 HOH B 5 115 115 HOH HOH . L 5 HOH B 6 116 116 HOH HOH . L 5 HOH B 7 117 117 HOH HOH . L 5 HOH B 8 118 118 HOH HOH . L 5 HOH B 9 119 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 -65.127 7.101 -13.443 1 46.41 ? CHA HEM 150 B 1 HETATM 2 C CHB HEM . . . G 2 -68.791 10.175 -13.15 1 46.3 ? CHB HEM 150 B 1 HETATM 3 C CHC HEM . . . G 2 -66.15 13.61 -15.306 1 45.86 ? CHC HEM 150 B 1 HETATM 4 C CHD HEM . . . G 2 -62.722 10.277 -16.206 1 45.96 ? CHD HEM 150 B 1 HETATM 5 C C1A HEM . . . G 2 -66.366 7.627 -13.212 1 46.83 ? C1A HEM 150 B 1 HETATM 6 C C2A HEM . . . G 2 -67.482 6.867 -12.691 1 48 ? C2A HEM 150 B 1 HETATM 7 C C3A HEM . . . G 2 -68.512 7.712 -12.603 1 47.31 ? C3A HEM 150 B 1 HETATM 8 C C4A HEM . . . G 2 -68.054 9.021 -13.071 1 46.38 ? C4A HEM 150 B 1 HETATM 9 C CMA HEM . . . G 2 -69.93 7.36 -12.094 1 46.69 ? CMA HEM 150 B 1 HETATM 10 C CAA HEM . . . G 2 -67.423 5.363 -12.305 1 48.65 ? CAA HEM 150 B 1 HETATM 11 C CBA HEM . . . G 2 -66.633 5.245 -10.993 1 51.64 ? CBA HEM 150 B 1 HETATM 12 C CGA HEM . . . G 2 -66.987 4.007 -10.195 1 54.54 ? CGA HEM 150 B 1 HETATM 13 O O1A HEM . . . G 2 -66.666 3.949 -8.96 1 54.91 ? O1A HEM 150 B 1 HETATM 14 O O2A HEM . . . G 2 -67.593 3.071 -10.801 1 56.07 ? O2A HEM 150 B 1 HETATM 15 C C1B HEM . . . G 2 -68.397 11.359 -13.72 1 45.85 ? C1B HEM 150 B 1 HETATM 16 C C2B HEM . . . G 2 -69.237 12.528 -13.873 1 46.26 ? C2B HEM 150 B 1 HETATM 17 C C3B HEM . . . G 2 -68.51 13.487 -14.462 1 45.28 ? C3B HEM 150 B 1 HETATM 18 C C4B HEM . . . G 2 -67.19 12.947 -14.704 1 45.5 ? C4B HEM 150 B 1 HETATM 19 C CMB HEM . . . G 2 -70.715 12.612 -13.419 1 47.1 ? CMB HEM 150 B 1 HETATM 20 C CAB HEM . . . G 2 -68.971 14.906 -14.845 1 43.83 ? CAB HEM 150 B 1 HETATM 21 C CBB HEM . . . G 2 -69.382 15.765 -13.92 1 42.2 ? CBB HEM 150 B 1 HETATM 22 C C1C HEM . . . G 2 -64.996 13 -15.763 1 46.12 ? C1C HEM 150 B 1 HETATM 23 C C2C HEM . . . G 2 -63.933 13.644 -16.522 1 45.92 ? C2C HEM 150 B 1 HETATM 24 C C3C HEM . . . G 2 -62.975 12.73 -16.77 1 45.41 ? C3C HEM 150 B 1 HETATM 25 C C4C HEM . . . G 2 -63.412 11.473 -16.168 1 45.45 ? C4C HEM 150 B 1 HETATM 26 C CMC HEM . . . G 2 -63.953 15.131 -16.948 1 45.86 ? CMC HEM 150 B 1 HETATM 27 C CAC HEM . . . G 2 -61.642 12.921 -17.561 1 44.39 ? CAC HEM 150 B 1 HETATM 28 C CBC HEM . . . G 2 -60.919 14.051 -17.597 1 43.38 ? CBC HEM 150 B 1 HETATM 29 C C1D HEM . . . G 2 -63.026 9.108 -15.553 1 45.22 ? C1D HEM 150 B 1 HETATM 30 C C2D HEM . . . G 2 -62.22 7.896 -15.542 1 45.51 ? C2D HEM 150 B 1 HETATM 31 C C3D HEM . . . G 2 -62.986 6.902 -14.656 1 46.56 ? C3D HEM 150 B 1 HETATM 32 C C4D HEM . . . G 2 -64.164 7.635 -14.255 1 46.22 ? C4D HEM 150 B 1 HETATM 33 C CMD HEM . . . G 2 -60.872 7.647 -16.254 1 45 ? CMD HEM 150 B 1 HETATM 34 C CAD HEM . . . G 2 -62.629 5.436 -14.253 1 46.81 ? CAD HEM 150 B 1 HETATM 35 C CBD HEM . . . G 2 -62.195 5.334 -12.778 1 46.74 ? CBD HEM 150 B 1 HETATM 36 C CGD HEM . . . G 2 -61.589 3.99 -12.392 1 47.79 ? CGD HEM 150 B 1 HETATM 37 O O1D HEM . . . G 2 -61.334 3.129 -13.275 1 48.1 ? O1D HEM 150 B 1 HETATM 38 O O2D HEM . . . G 2 -61.348 3.755 -11.177 1 47.89 ? O2D HEM 150 B 1 HETATM 39 N NA HEM . . . G 2 -66.736 8.936 -13.433 1 45.27 ? NA HEM 150 B 1 HETATM 40 N NB HEM . . . G 2 -67.152 11.643 -14.238 1 45.29 ? NB HEM 150 B 1 HETATM 41 N NC HEM . . . G 2 -64.643 11.672 -15.56 1 45.36 ? NC HEM 150 B 1 HETATM 42 N ND HEM . . . G 2 -64.165 8.919 -14.795 1 45 ? ND HEM 150 B 1 HETATM 43 FE FE HEM . . . G 2 -65.777 10.286 -14.596 1 44.01 ? FE HEM 150 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #