data_3FOW # _model_server_result.job_id wd_2Ww9BnedWdc4tlZ3Zfw _model_server_result.datetime_utc '2024-11-05 15:20:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fow # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":276}' # _entry.id 3FOW # _exptl.entry_id 3FOW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.253 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FOW _cell.length_a 234.969 _cell.length_b 234.969 _cell.length_c 234.969 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FOW _symmetry.cell_setting ? _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N # _chem_comp.formula 'C11 H14 N4 O4' _chem_comp.formula_weight 266.253 _chem_comp.id IMH _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Forodesine;Immucillin H' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' IMH sing 173 n n O5' "HO'5" IMH sing 174 n n C5' C4' IMH sing 175 n n C5' "H5'1" IMH sing 176 n n C5' "H5'2" IMH sing 177 n n C4' N4' IMH sing 178 n n C4' C3' IMH sing 179 n n C4' H4' IMH sing 180 n n N4' C1' IMH sing 181 n n N4' "HN'4" IMH sing 182 n n C3' O3' IMH sing 183 n n C3' C2' IMH sing 184 n n C3' H3' IMH sing 185 n n O3' "HO'3" IMH sing 186 n n C2' O2' IMH sing 187 n n C2' C1' IMH sing 188 n n C2' H2' IMH sing 189 n n O2' "HO'2" IMH sing 190 n n C1' C9 IMH sing 191 n n C1' H1' IMH sing 192 n n C9 C8 IMH doub 193 n y C9 C4 IMH sing 194 n y C8 N7 IMH sing 195 n y C8 H8 IMH sing 196 n n N7 C5 IMH sing 197 n y N7 HN7 IMH sing 198 n n C5 C6 IMH sing 199 n n C5 C4 IMH doub 200 n y C6 O6 IMH doub 201 n n C6 N1 IMH sing 202 n n N1 C2 IMH sing 203 n n C2 N3 IMH doub 204 n n C2 H2 IMH sing 205 n n N3 C4 IMH sing 206 n n N1 H1 IMH sing 207 n n # _atom_sites.entry_id 3FOW _atom_sites.fract_transf_matrix[1][1] 0.004256 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 275 275 PO4 PO4 . D 2 PO4 A 1 276 276 PO4 PO4 . E 2 PO4 A 1 277 277 PO4 PO4 . F 3 IMH A 1 278 278 IMH IMH . G 2 PO4 B 1 275 275 PO4 PO4 . H 3 IMH B 1 276 276 IMH IMH . I 4 HOH A 1 279 279 HOH HOH . I 4 HOH A 2 280 280 HOH HOH . I 4 HOH A 3 281 281 HOH HOH . I 4 HOH A 4 282 282 HOH HOH . I 4 HOH A 5 283 283 HOH HOH . I 4 HOH A 6 284 284 HOH HOH . I 4 HOH A 7 285 285 HOH HOH . I 4 HOH A 8 286 286 HOH HOH . I 4 HOH A 9 287 287 HOH HOH . I 4 HOH A 10 288 288 HOH HOH . I 4 HOH A 11 289 289 HOH HOH . I 4 HOH A 12 290 290 HOH HOH . I 4 HOH A 13 291 291 HOH HOH . I 4 HOH A 14 292 292 HOH HOH . I 4 HOH A 15 293 293 HOH HOH . I 4 HOH A 16 294 294 HOH HOH . I 4 HOH A 17 295 295 HOH HOH . I 4 HOH A 18 296 296 HOH HOH . I 4 HOH A 19 297 297 HOH HOH . I 4 HOH A 20 298 298 HOH HOH . I 4 HOH A 21 299 299 HOH HOH . I 4 HOH A 22 300 300 HOH HOH . I 4 HOH A 23 301 301 HOH HOH . I 4 HOH A 24 302 302 HOH HOH . I 4 HOH A 25 303 303 HOH HOH . I 4 HOH A 26 304 304 HOH HOH . I 4 HOH A 27 305 305 HOH HOH . I 4 HOH A 28 306 306 HOH HOH . I 4 HOH A 29 307 307 HOH HOH . I 4 HOH A 30 308 308 HOH HOH . I 4 HOH A 31 309 309 HOH HOH . I 4 HOH A 32 310 310 HOH HOH . I 4 HOH A 33 311 311 HOH HOH . I 4 HOH A 34 312 312 HOH HOH . I 4 HOH A 35 313 313 HOH HOH . I 4 HOH A 36 314 314 HOH HOH . I 4 HOH A 37 315 315 HOH HOH . I 4 HOH A 38 316 316 HOH HOH . I 4 HOH A 39 317 317 HOH HOH . I 4 HOH A 40 318 318 HOH HOH . I 4 HOH A 41 319 319 HOH HOH . I 4 HOH A 42 320 320 HOH HOH . I 4 HOH A 43 321 321 HOH HOH . I 4 HOH A 44 322 322 HOH HOH . I 4 HOH A 45 323 323 HOH HOH . J 4 HOH B 1 277 277 HOH HOH . J 4 HOH B 2 278 278 HOH HOH . J 4 HOH B 3 279 279 HOH HOH . J 4 HOH B 4 280 280 HOH HOH . J 4 HOH B 5 281 281 HOH HOH . J 4 HOH B 6 282 282 HOH HOH . J 4 HOH B 7 283 283 HOH HOH . J 4 HOH B 8 284 284 HOH HOH . J 4 HOH B 9 285 285 HOH HOH . J 4 HOH B 10 286 286 HOH HOH . J 4 HOH B 11 287 287 HOH HOH . J 4 HOH B 12 288 288 HOH HOH . J 4 HOH B 13 289 289 HOH HOH . J 4 HOH B 14 290 290 HOH HOH . J 4 HOH B 15 291 291 HOH HOH . J 4 HOH B 16 292 292 HOH HOH . J 4 HOH B 17 293 293 HOH HOH . J 4 HOH B 18 294 294 HOH HOH . J 4 HOH B 19 295 295 HOH HOH . J 4 HOH B 20 296 296 HOH HOH . J 4 HOH B 21 297 297 HOH HOH . J 4 HOH B 22 298 298 HOH HOH . J 4 HOH B 23 299 299 HOH HOH . J 4 HOH B 24 300 300 HOH HOH . J 4 HOH B 25 301 301 HOH HOH . J 4 HOH B 26 302 302 HOH HOH . J 4 HOH B 27 303 303 HOH HOH . J 4 HOH B 28 304 304 HOH HOH . J 4 HOH B 29 305 305 HOH HOH . J 4 HOH B 30 306 306 HOH HOH . J 4 HOH B 31 307 307 HOH HOH . J 4 HOH B 32 308 308 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' IMH . . . H 3 -14.684 20.342 16.203 1 46.24 ? O5' IMH 276 B 1 HETATM 2 C C5' IMH . . . H 3 -13.53 20.984 16.771 1 47.45 ? C5' IMH 276 B 1 HETATM 3 C C4' IMH . . . H 3 -13.63 21.115 18.292 1 49.92 ? C4' IMH 276 B 1 HETATM 4 N N4' IMH . . . H 3 -14.398 20.04 18.88 1 48.85 ? N4' IMH 276 B 1 HETATM 5 C C3' IMH . . . H 3 -12.271 20.944 18.954 1 48.3 ? C3' IMH 276 B 1 HETATM 6 O O3' IMH . . . H 3 -12.272 21.631 20.214 1 49.44 ? O3' IMH 276 B 1 HETATM 7 C C2' IMH . . . H 3 -12.145 19.452 19.211 1 45.22 ? C2' IMH 276 B 1 HETATM 8 O O2' IMH . . . H 3 -11.424 19.235 20.426 1 44.14 ? O2' IMH 276 B 1 HETATM 9 C C1' IMH . . . H 3 -13.574 18.933 19.327 1 42.46 ? C1' IMH 276 B 1 HETATM 10 C C9 IMH . . . H 3 -13.929 17.756 18.493 1 40.43 ? C9 IMH 276 B 1 HETATM 11 C C8 IMH . . . H 3 -15.189 17.206 18.567 1 40.03 ? C8 IMH 276 B 1 HETATM 12 N N7 IMH . . . H 3 -15.195 16.159 17.69 1 39.88 ? N7 IMH 276 B 1 HETATM 13 C C5 IMH . . . H 3 -14.013 16.014 17.052 1 40.34 ? C5 IMH 276 B 1 HETATM 14 C C6 IMH . . . H 3 -13.55 15.124 16.097 1 39.16 ? C6 IMH 276 B 1 HETATM 15 O O6 IMH . . . H 3 -14.372 14.145 15.63 1 39.98 ? O6 IMH 276 B 1 HETATM 16 N N1 IMH . . . H 3 -12.272 15.244 15.649 1 39.58 ? N1 IMH 276 B 1 HETATM 17 C C2 IMH . . . H 3 -11.457 16.212 16.122 1 41.37 ? C2 IMH 276 B 1 HETATM 18 N N3 IMH . . . H 3 -11.863 17.099 17.056 1 40.77 ? N3 IMH 276 B 1 HETATM 19 C C4 IMH . . . H 3 -13.137 16.992 17.505 1 42.57 ? C4 IMH 276 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #