data_3FPD # _model_server_result.job_id IzQAH_U3ClwPzFqmXG1Emw _model_server_result.datetime_utc '2024-10-13 00:23:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fpd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":7}' # _entry.id 3FPD # _exptl.entry_id 3FPD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FPD _cell.length_a 75.3 _cell.length_b 95.2 _cell.length_c 101.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FPD _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F ZN ZN . A ZN 2 1_555 A SG CYS 63 A CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 F ZN ZN . A ZN 2 1_555 A SG CYS 100 A CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc3 F ZN ZN . A ZN 2 1_555 A SG CYS 106 A CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc4 F ZN ZN . A ZN 2 1_555 A SG CYS 110 A CYS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc5 G ZN ZN . A ZN 3 1_555 A SG CYS 57 A CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc6 G ZN ZN . A ZN 3 1_555 A SG CYS 59 A CYS 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc7 G ZN ZN . A ZN 3 1_555 A SG CYS 63 A CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc8 G ZN ZN . A ZN 3 1_555 A SG CYS 68 A CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc9 H ZN ZN . A ZN 4 1_555 A SG CYS 198 A CYS 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc10 H ZN ZN . A ZN 4 1_555 A SG CYS 251 A CYS 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc11 H ZN ZN . A ZN 4 1_555 A SG CYS 253 A CYS 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc12 H ZN ZN . A ZN 4 1_555 A SG CYS 258 A CYS 1232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc13 A SG CYS 57 A CYS 1031 1_555 E ZN ZN . A ZN 1236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc14 A SG CYS 70 A CYS 1044 1_555 E ZN ZN . A ZN 1236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc15 A SG CYS 100 A CYS 1074 1_555 E ZN ZN . A ZN 1236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc16 A SG CYS 104 A CYS 1078 1_555 E ZN ZN . A ZN 1236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? metalc ? metalc17 K ZN ZN . B ZN 5 1_555 B SG CYS 57 B CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc18 K ZN ZN . B ZN 5 1_555 B SG CYS 70 B CYS 1044 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc19 K ZN ZN . B ZN 5 1_555 B SG CYS 100 B CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc20 K ZN ZN . B ZN 5 1_555 B SG CYS 104 B CYS 1078 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc21 L ZN ZN . B ZN 6 1_555 B SG CYS 63 B CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc22 L ZN ZN . B ZN 6 1_555 B SG CYS 100 B CYS 1074 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc23 L ZN ZN . B ZN 6 1_555 B SG CYS 106 B CYS 1080 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc24 L ZN ZN . B ZN 6 1_555 B SG CYS 110 B CYS 1084 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc25 M ZN ZN . B ZN 7 1_555 B SG CYS 57 B CYS 1031 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc26 M ZN ZN . B ZN 7 1_555 B SG CYS 59 B CYS 1033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc27 M ZN ZN . B ZN 7 1_555 B SG CYS 63 B CYS 1037 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc28 M ZN ZN . B ZN 7 1_555 B SG CYS 68 B CYS 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc29 N ZN ZN . B ZN 8 1_555 B SG CYS 198 B CYS 1172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc30 N ZN ZN . B ZN 8 1_555 B SG CYS 251 B CYS 1225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc31 N ZN ZN . B ZN 8 1_555 B SG CYS 253 B CYS 1227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc32 N ZN ZN . B ZN 8 1_555 B SG CYS 258 B CYS 1232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.646 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3FPD _atom_sites.fract_transf_matrix[1][1] 0.01328 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010504 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 101 101 SAH SAH . D 3 Q4A A 1 1 1 Q4A Q4A . E 4 ZN A 1 1236 1 ZN ZN . F 4 ZN A 1 2 2 ZN ZN . G 4 ZN A 1 3 3 ZN ZN . H 4 ZN A 1 4 4 ZN ZN . I 2 SAH B 1 102 102 SAH SAH . J 3 Q4A B 1 2 2 Q4A Q4A . K 4 ZN B 1 5 5 ZN ZN . L 4 ZN B 1 6 6 ZN ZN . M 4 ZN B 1 7 7 ZN ZN . N 4 ZN B 1 8 8 ZN ZN . O 5 HOH A 1 10 10 HOH TIP . O 5 HOH A 2 11 11 HOH TIP . O 5 HOH A 3 12 12 HOH TIP . O 5 HOH A 4 13 13 HOH TIP . O 5 HOH A 5 14 14 HOH TIP . O 5 HOH A 6 15 15 HOH TIP . O 5 HOH A 7 17 17 HOH TIP . O 5 HOH A 8 18 18 HOH TIP . O 5 HOH A 9 19 19 HOH TIP . O 5 HOH A 10 20 20 HOH TIP . O 5 HOH A 11 21 21 HOH TIP . O 5 HOH A 12 22 22 HOH TIP . O 5 HOH A 13 26 26 HOH TIP . O 5 HOH A 14 27 27 HOH TIP . O 5 HOH A 15 28 28 HOH TIP . O 5 HOH A 16 38 38 HOH TIP . O 5 HOH A 17 39 39 HOH TIP . O 5 HOH A 18 40 40 HOH TIP . O 5 HOH A 19 41 41 HOH TIP . O 5 HOH A 20 42 42 HOH TIP . O 5 HOH A 21 43 43 HOH TIP . O 5 HOH A 22 44 44 HOH TIP . O 5 HOH A 23 47 47 HOH TIP . O 5 HOH A 24 48 48 HOH TIP . O 5 HOH A 25 49 49 HOH TIP . O 5 HOH A 26 50 50 HOH TIP . O 5 HOH A 27 51 51 HOH TIP . O 5 HOH A 28 52 52 HOH TIP . O 5 HOH A 29 53 53 HOH TIP . O 5 HOH A 30 54 54 HOH TIP . O 5 HOH A 31 56 56 HOH TIP . O 5 HOH A 32 57 57 HOH TIP . O 5 HOH A 33 61 61 HOH TIP . O 5 HOH A 34 68 68 HOH TIP . O 5 HOH A 35 69 69 HOH TIP . O 5 HOH A 36 73 73 HOH TIP . O 5 HOH A 37 77 77 HOH TIP . O 5 HOH A 38 78 78 HOH TIP . O 5 HOH A 39 79 79 HOH TIP . O 5 HOH A 40 80 80 HOH TIP . O 5 HOH A 41 92 92 HOH TIP . O 5 HOH A 42 93 93 HOH TIP . O 5 HOH A 43 94 94 HOH TIP . O 5 HOH A 44 97 97 HOH TIP . O 5 HOH A 45 99 99 HOH TIP . O 5 HOH A 46 100 100 HOH TIP . O 5 HOH A 47 105 105 HOH TIP . O 5 HOH A 48 106 106 HOH TIP . O 5 HOH A 49 107 107 HOH TIP . O 5 HOH A 50 109 109 HOH TIP . O 5 HOH A 51 111 111 HOH TIP . O 5 HOH A 52 112 112 HOH TIP . O 5 HOH A 53 1237 101 HOH TIP . P 5 HOH B 1 1 1 HOH TIP . P 5 HOH B 2 3 3 HOH TIP . P 5 HOH B 3 4 4 HOH TIP . P 5 HOH B 4 9 9 HOH TIP . P 5 HOH B 5 16 16 HOH TIP . P 5 HOH B 6 23 23 HOH TIP . P 5 HOH B 7 24 24 HOH TIP . P 5 HOH B 8 25 25 HOH TIP . P 5 HOH B 9 29 29 HOH TIP . P 5 HOH B 10 30 30 HOH TIP . P 5 HOH B 11 31 31 HOH TIP . P 5 HOH B 12 32 32 HOH TIP . P 5 HOH B 13 33 33 HOH TIP . P 5 HOH B 14 34 34 HOH TIP . P 5 HOH B 15 35 35 HOH TIP . P 5 HOH B 16 36 36 HOH TIP . P 5 HOH B 17 37 37 HOH TIP . P 5 HOH B 18 45 45 HOH TIP . P 5 HOH B 19 46 46 HOH TIP . P 5 HOH B 20 55 55 HOH TIP . P 5 HOH B 21 58 58 HOH TIP . P 5 HOH B 22 59 59 HOH TIP . P 5 HOH B 23 60 60 HOH TIP . P 5 HOH B 24 62 62 HOH TIP . P 5 HOH B 25 63 63 HOH TIP . P 5 HOH B 26 64 64 HOH TIP . P 5 HOH B 27 65 65 HOH TIP . P 5 HOH B 28 66 66 HOH TIP . P 5 HOH B 29 67 67 HOH TIP . P 5 HOH B 30 70 70 HOH TIP . P 5 HOH B 31 71 71 HOH TIP . P 5 HOH B 32 72 72 HOH TIP . P 5 HOH B 33 74 74 HOH TIP . P 5 HOH B 34 75 75 HOH TIP . P 5 HOH B 35 76 76 HOH TIP . P 5 HOH B 36 81 81 HOH TIP . P 5 HOH B 37 82 82 HOH TIP . P 5 HOH B 38 83 83 HOH TIP . P 5 HOH B 39 84 84 HOH TIP . P 5 HOH B 40 85 85 HOH TIP . P 5 HOH B 41 86 86 HOH TIP . P 5 HOH B 42 87 87 HOH TIP . P 5 HOH B 43 88 88 HOH TIP . P 5 HOH B 44 89 89 HOH TIP . P 5 HOH B 45 90 90 HOH TIP . P 5 HOH B 46 91 91 HOH TIP . P 5 HOH B 47 95 95 HOH TIP . P 5 HOH B 48 96 96 HOH TIP . P 5 HOH B 49 98 98 HOH TIP . P 5 HOH B 50 103 103 HOH TIP . P 5 HOH B 51 104 104 HOH TIP . P 5 HOH B 52 108 108 HOH TIP . P 5 HOH B 53 110 110 HOH TIP . P 5 HOH B 54 113 113 HOH TIP . P 5 HOH B 55 114 114 HOH TIP . P 5 HOH B 56 115 115 HOH TIP . P 5 HOH B 57 116 116 HOH TIP . P 5 HOH B 58 117 117 HOH TIP . P 5 HOH B 59 118 118 HOH TIP . P 5 HOH B 60 119 119 HOH TIP . P 5 HOH B 61 1236 2 HOH TIP . P 5 HOH B 62 1237 5 HOH TIP . P 5 HOH B 63 1238 6 HOH TIP . P 5 HOH B 64 1239 7 HOH TIP . P 5 HOH B 65 1240 8 HOH TIP . P 5 HOH B 66 1241 102 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 4 _atom_site.Cartn_x 5.235 _atom_site.Cartn_y -5.537 _atom_site.Cartn_z 19.284 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 7 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #