data_3FPT
#
_model_server_result.job_id            qu71cCuhviwgDgcC7SsCNg 
_model_server_result.datetime_utc      '2024-10-20 19:01:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fpt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":119}' 
#
_entry.id    3FPT 
#
_exptl.entry_id    3FPT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3FPT 
_cell.length_a            68.704 
_cell.length_b            70.491 
_cell.length_c            103.819 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FPT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,J 1 1 
B,F,K 2 1 
C,G,H,I,L 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 12 A CYS 12 1_555 A SG CYS 33 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
disulf ? disulf2 A SG CYS 29 A CYS 29 1_555 A SG CYS 70 A CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf3 A SG CYS 46 A CYS 46 1_555 A SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
disulf ? disulf5 B SG CYS 12 B CYS 12 1_555 B SG CYS 33 B CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? 
disulf ? disulf6 B SG CYS 29 B CYS 29 1_555 B SG CYS 70 B CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? 
disulf ? disulf7 B SG CYS 46 B CYS 46 1_555 B SG CYS 75 B CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.863 ? 
disulf ? disulf9 C SG CYS 12 C CYS 12 1_555 C SG CYS 33 C CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
disulf ? disulf10 C SG CYS 29 C CYS 29 1_555 C SG CYS 70 C CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf11 C SG CYS 46 C CYS 46 1_555 C SG CYS 75 C CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
disulf ? disulf12 C SG CYS 65 C CYS 65 1_555 C SG CYS 84 C CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
covale ? covale1 A ND2 ASN 19 A ASN 19 1_555 D C1 NAG . A NAG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? 
covale ? covale2 A ND2 ASN 42 A ASN 42 1_555 E C1 NAG . A NAG 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? 
covale ? covale3 B ND2 ASN 19 B ASN 19 1_555 F C1 NAG . B NAG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.502 ? 
covale ? covale4 C ND2 ASN 19 C ASN 19 1_555 G C1 NAG . C NAG 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? 
covale ? covale5 C ND2 ASN 34 C ASN 34 1_555 H C1 NAG . C NAG 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? 
covale ? covale6 C ND2 ASN 42 C ASN 42 1_555 I C1 NAG . C NAG 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3FPT 
_atom_sites.fract_transf_matrix[1][1]    0.014555 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014186 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009632 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAG A 1 119 119 NAG NAG . 
E 2 NAG A 1 142 142 NAG NAG . 
F 2 NAG B 1 119 119 NAG NAG . 
G 2 NAG C 1 119 119 NAG NAG . 
H 2 NAG C 1 134 134 NAG NAG . 
I 2 NAG C 1 142 142 NAG NAG . 
J 3 HOH A 1 101 2 HOH HOH . 
J 3 HOH A 2 102 4 HOH HOH . 
J 3 HOH A 3 103 15 HOH HOH . 
J 3 HOH A 4 104 6 HOH HOH . 
J 3 HOH A 5 105 11 HOH HOH . 
J 3 HOH A 6 106 12 HOH HOH . 
J 3 HOH A 7 107 14 HOH HOH . 
J 3 HOH A 8 108 18 HOH HOH . 
J 3 HOH A 9 109 19 HOH HOH . 
J 3 HOH A 10 110 20 HOH HOH . 
J 3 HOH A 11 111 22 HOH HOH . 
J 3 HOH A 12 112 24 HOH HOH . 
J 3 HOH A 13 113 26 HOH HOH . 
K 3 HOH B 1 101 3 HOH HOH . 
K 3 HOH B 2 102 7 HOH HOH . 
K 3 HOH B 3 103 5 HOH HOH . 
K 3 HOH B 4 104 9 HOH HOH . 
K 3 HOH B 5 105 10 HOH HOH . 
K 3 HOH B 6 106 13 HOH HOH . 
K 3 HOH B 7 107 16 HOH HOH . 
K 3 HOH B 8 108 17 HOH HOH . 
K 3 HOH B 9 109 25 HOH HOH . 
K 3 HOH B 10 110 28 HOH HOH . 
K 3 HOH B 11 111 8 HOH HOH . 
L 3 HOH C 1 101 1 HOH HOH . 
L 3 HOH C 2 103 21 HOH HOH . 
L 3 HOH C 3 104 23 HOH HOH . 
L 3 HOH C 4 105 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . G 2 40.171 1.524 16.585 1 79.19 ? C1 NAG 119 C 1 
HETATM 2 C C2 NAG . . . G 2 41.147 1.309 15.398 1 80.13 ? C2 NAG 119 C 1 
HETATM 3 C C3 NAG . . . G 2 41.826 -0.112 15.125 1 76.96 ? C3 NAG 119 C 1 
HETATM 4 C C4 NAG . . . G 2 42.36 -0.704 16.416 1 78.96 ? C4 NAG 119 C 1 
HETATM 5 C C5 NAG . . . G 2 41.215 -0.719 17.446 1 83.04 ? C5 NAG 119 C 1 
HETATM 6 C C6 NAG . . . G 2 41.684 -1.247 18.842 1 86.16 ? C6 NAG 119 C 1 
HETATM 7 C C7 NAG . . . G 2 41.167 2.789 13.546 1 75.49 ? C7 NAG 119 C 1 
HETATM 8 C C8 NAG . . . G 2 40.523 3.166 12.246 1 75.71 ? C8 NAG 119 C 1 
HETATM 9 N N2 NAG . . . G 2 40.469 1.904 14.236 1 79.92 ? N2 NAG 119 C 1 
HETATM 10 O O3 NAG . . . G 2 42.949 -0.183 14.226 1 63.78 ? O3 NAG 119 C 1 
HETATM 11 O O4 NAG . . . G 2 43.054 -1.933 16.168 1 81.07 ? O4 NAG 119 C 1 
HETATM 12 O O5 NAG . . . G 2 40.653 0.631 17.615 1 86.76 ? O5 NAG 119 C 1 
HETATM 13 O O6 NAG . . . G 2 42.701 -2.265 18.804 1 83.75 ? O6 NAG 119 C 1 
HETATM 14 O O7 NAG . . . G 2 42.266 3.223 13.98 1 73.66 ? O7 NAG 119 C 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#