data_3FPU # _model_server_result.job_id MfVJDQLgRHi8KN7AkWlzPQ _model_server_result.datetime_utc '2024-10-25 20:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fpu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 3FPU # _exptl.entry_id 3FPU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FPU _cell.length_a 104.384 _cell.length_b 104.384 _cell.length_c 104.384 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FPU _symmetry.cell_setting ? _symmetry.Int_Tables_number 212 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 12 1_555 A SG CYS 33 A CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf2 A SG CYS 29 A CYS 29 1_555 A SG CYS 70 A CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 46 A CYS 46 1_555 A SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? disulf ? disulf5 B SG CYS 11 B CYS 11 1_555 B SG CYS 35 B CYS 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf6 B SG CYS 12 B CYS 12 1_555 B SG CYS 51 B CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc1 A NE2 HIS 97 A HIS 97 1_555 C NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc2 A NE2 HIS 98 A HIS 98 1_555 D NI NI . A NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc3 A NE2 HIS 100 A HIS 100 1_555 D NI NI . A NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3FPU _atom_sites.fract_transf_matrix[1][1] 0.00958 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00958 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00958 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI A 1 101 1 NI NI . D 3 NI A 1 102 2 NI NI . E 4 HOH A 1 103 103 HOH HOH . E 4 HOH A 2 104 104 HOH HOH . E 4 HOH A 3 105 2 HOH HOH . E 4 HOH A 4 106 106 HOH HOH . E 4 HOH A 5 107 107 HOH HOH . E 4 HOH A 6 108 108 HOH HOH . E 4 HOH A 7 109 3 HOH HOH . E 4 HOH A 8 110 110 HOH HOH . E 4 HOH A 9 111 111 HOH HOH . E 4 HOH A 10 112 112 HOH HOH . E 4 HOH A 11 113 113 HOH HOH . E 4 HOH A 12 114 114 HOH HOH . E 4 HOH A 13 115 115 HOH HOH . E 4 HOH A 14 116 6 HOH HOH . E 4 HOH A 15 117 7 HOH HOH . E 4 HOH A 16 118 8 HOH HOH . E 4 HOH A 17 119 10 HOH HOH . E 4 HOH A 18 120 120 HOH HOH . E 4 HOH A 19 121 12 HOH HOH . E 4 HOH A 20 122 122 HOH HOH . E 4 HOH A 21 123 123 HOH HOH . E 4 HOH A 22 124 13 HOH HOH . E 4 HOH A 23 125 125 HOH HOH . E 4 HOH A 24 126 126 HOH HOH . E 4 HOH A 25 127 127 HOH HOH . E 4 HOH A 26 128 128 HOH HOH . E 4 HOH A 27 129 14 HOH HOH . E 4 HOH A 28 130 130 HOH HOH . E 4 HOH A 29 132 132 HOH HOH . E 4 HOH A 30 133 133 HOH HOH . E 4 HOH A 31 134 134 HOH HOH . E 4 HOH A 32 135 15 HOH HOH . E 4 HOH A 33 136 16 HOH HOH . E 4 HOH A 34 137 17 HOH HOH . E 4 HOH A 35 138 138 HOH HOH . E 4 HOH A 36 139 18 HOH HOH . E 4 HOH A 37 140 19 HOH HOH . E 4 HOH A 38 141 20 HOH HOH . E 4 HOH A 39 142 142 HOH HOH . E 4 HOH A 40 143 143 HOH HOH . E 4 HOH A 41 144 144 HOH HOH . E 4 HOH A 42 145 145 HOH HOH . E 4 HOH A 43 147 147 HOH HOH . E 4 HOH A 44 148 148 HOH HOH . E 4 HOH A 45 149 149 HOH HOH . E 4 HOH A 46 151 151 HOH HOH . E 4 HOH A 47 152 152 HOH HOH . E 4 HOH A 48 153 153 HOH HOH . E 4 HOH A 49 154 154 HOH HOH . E 4 HOH A 50 155 21 HOH HOH . E 4 HOH A 51 156 156 HOH HOH . E 4 HOH A 52 157 157 HOH HOH . E 4 HOH A 53 158 158 HOH HOH . E 4 HOH A 54 159 23 HOH HOH . E 4 HOH A 55 160 24 HOH HOH . E 4 HOH A 56 161 25 HOH HOH . E 4 HOH A 57 162 26 HOH HOH . E 4 HOH A 58 163 28 HOH HOH . E 4 HOH A 59 164 30 HOH HOH . E 4 HOH A 60 165 32 HOH HOH . E 4 HOH A 61 166 33 HOH HOH . E 4 HOH A 62 167 36 HOH HOH . E 4 HOH A 63 168 38 HOH HOH . E 4 HOH A 64 169 39 HOH HOH . E 4 HOH A 65 170 40 HOH HOH . E 4 HOH A 66 171 43 HOH HOH . E 4 HOH A 67 172 44 HOH HOH . E 4 HOH A 68 173 46 HOH HOH . E 4 HOH A 69 174 48 HOH HOH . E 4 HOH A 70 175 49 HOH HOH . E 4 HOH A 71 176 50 HOH HOH . E 4 HOH A 72 177 51 HOH HOH . E 4 HOH A 73 178 53 HOH HOH . E 4 HOH A 74 179 54 HOH HOH . E 4 HOH A 75 180 55 HOH HOH . E 4 HOH A 76 181 56 HOH HOH . E 4 HOH A 77 182 62 HOH HOH . E 4 HOH A 78 183 63 HOH HOH . E 4 HOH A 79 185 65 HOH HOH . E 4 HOH A 80 186 66 HOH HOH . E 4 HOH A 81 187 67 HOH HOH . E 4 HOH A 82 188 69 HOH HOH . E 4 HOH A 83 189 70 HOH HOH . E 4 HOH A 84 190 71 HOH HOH . E 4 HOH A 85 191 72 HOH HOH . E 4 HOH A 86 192 73 HOH HOH . E 4 HOH A 87 193 74 HOH HOH . E 4 HOH A 88 194 75 HOH HOH . E 4 HOH A 89 195 77 HOH HOH . E 4 HOH A 90 196 78 HOH HOH . E 4 HOH A 91 197 79 HOH HOH . E 4 HOH A 92 198 80 HOH HOH . E 4 HOH A 93 199 81 HOH HOH . E 4 HOH A 94 200 82 HOH HOH . E 4 HOH A 95 201 83 HOH HOH . E 4 HOH A 96 202 84 HOH HOH . E 4 HOH A 97 203 85 HOH HOH . E 4 HOH A 98 205 87 HOH HOH . E 4 HOH A 99 206 90 HOH HOH . E 4 HOH A 100 207 92 HOH HOH . E 4 HOH A 101 208 93 HOH HOH . E 4 HOH A 102 209 94 HOH HOH . E 4 HOH A 103 210 99 HOH HOH . E 4 HOH A 104 211 101 HOH HOH . E 4 HOH A 105 212 102 HOH HOH . F 4 HOH B 1 71 1 HOH HOH . F 4 HOH B 2 72 4 HOH HOH . F 4 HOH B 3 73 5 HOH HOH . F 4 HOH B 4 74 9 HOH HOH . F 4 HOH B 5 75 11 HOH HOH . F 4 HOH B 6 76 76 HOH HOH . F 4 HOH B 7 77 22 HOH HOH . F 4 HOH B 8 78 27 HOH HOH . F 4 HOH B 9 79 29 HOH HOH . F 4 HOH B 10 80 31 HOH HOH . F 4 HOH B 11 81 34 HOH HOH . F 4 HOH B 12 82 35 HOH HOH . F 4 HOH B 13 83 37 HOH HOH . F 4 HOH B 14 84 41 HOH HOH . F 4 HOH B 15 85 42 HOH HOH . F 4 HOH B 16 86 45 HOH HOH . F 4 HOH B 17 87 47 HOH HOH . F 4 HOH B 18 88 88 HOH HOH . F 4 HOH B 19 89 89 HOH HOH . F 4 HOH B 20 90 52 HOH HOH . F 4 HOH B 21 91 91 HOH HOH . F 4 HOH B 22 92 57 HOH HOH . F 4 HOH B 23 93 58 HOH HOH . F 4 HOH B 24 94 59 HOH HOH . F 4 HOH B 25 95 95 HOH HOH . F 4 HOH B 26 96 96 HOH HOH . F 4 HOH B 27 97 97 HOH HOH . F 4 HOH B 28 98 98 HOH HOH . F 4 HOH B 29 99 60 HOH HOH . F 4 HOH B 30 100 100 HOH HOH . F 4 HOH B 31 101 61 HOH HOH . F 4 HOH B 32 102 68 HOH HOH . F 4 HOH B 33 105 105 HOH HOH . F 4 HOH B 34 109 109 HOH HOH . F 4 HOH B 35 116 116 HOH HOH . F 4 HOH B 36 117 117 HOH HOH . F 4 HOH B 37 118 118 HOH HOH . F 4 HOH B 38 119 119 HOH HOH . F 4 HOH B 39 121 121 HOH HOH . F 4 HOH B 40 124 124 HOH HOH . F 4 HOH B 41 129 129 HOH HOH . F 4 HOH B 42 131 131 HOH HOH . F 4 HOH B 43 135 135 HOH HOH . F 4 HOH B 44 136 136 HOH HOH . F 4 HOH B 45 137 137 HOH HOH . F 4 HOH B 46 139 139 HOH HOH . F 4 HOH B 47 140 140 HOH HOH . F 4 HOH B 48 141 141 HOH HOH . F 4 HOH B 49 146 146 HOH HOH . F 4 HOH B 50 150 150 HOH HOH . F 4 HOH B 51 155 155 HOH HOH . F 4 HOH B 52 159 159 HOH HOH . F 4 HOH B 53 160 160 HOH HOH . F 4 HOH B 54 184 64 HOH HOH . F 4 HOH B 55 204 86 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 72.236 _atom_site.Cartn_y 72.237 _atom_site.Cartn_z 72.237 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 15.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #