data_3FQA # _model_server_result.job_id o7kW86JdQV6sH7sASHTLlw _model_server_result.datetime_utc '2024-11-15 10:03:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1434}' # _entry.id 3FQA # _exptl.entry_id 3FQA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.173 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FQA _cell.length_a 67.938 _cell.length_b 107.868 _cell.length_c 123.066 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C8 H13 N2 O5 P' _chem_comp.formula_weight 248.173 _chem_comp.id PMP _chem_comp.mon_nstd_flag . _chem_comp.name "4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "PYRIDOXAMINE-5'-PHOSPHATE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PMP doub 277 n y N1 C6 PMP sing 278 n y C2 C2A PMP sing 279 n n C2 C3 PMP sing 280 n y C2A H2A1 PMP sing 281 n n C2A H2A2 PMP sing 282 n n C2A H2A3 PMP sing 283 n n C3 O3 PMP sing 284 n n C3 C4 PMP doub 285 n y O3 HO3 PMP sing 286 n n C4 C4A PMP sing 287 n n C4 C5 PMP sing 288 n y C4A N4A PMP sing 289 n n C4A H4A1 PMP sing 290 n n C4A H4A2 PMP sing 291 n n N4A HNA1 PMP sing 292 n n N4A HNA2 PMP sing 293 n n C5 C6 PMP doub 294 n y C5 C5A PMP sing 295 n n C6 H6 PMP sing 296 n n C5A O4P PMP sing 297 n n C5A H5A1 PMP sing 298 n n C5A H5A2 PMP sing 299 n n O4P P PMP sing 300 n n P O1P PMP doub 301 n n P O2P PMP sing 302 n n P O3P PMP sing 303 n n O2P HOP2 PMP sing 304 n n O3P HOP3 PMP sing 305 n n # _atom_sites.entry_id 3FQA _atom_sites.fract_transf_matrix[1][1] 0.014719 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008126 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PMP A 1 1434 1273 PMP PMP . D 3 GAB A 1 2000 2000 GAB GAB . E 2 PMP B 1 2434 2273 PMP PMP . F 4 HOH A 1 7001 7001 HOH TIP . F 4 HOH A 2 7002 7002 HOH TIP . F 4 HOH A 3 7003 7003 HOH TIP . F 4 HOH A 4 7004 7004 HOH TIP . F 4 HOH A 5 7009 7009 HOH TIP . F 4 HOH A 6 7010 7010 HOH TIP . F 4 HOH A 7 7011 7011 HOH TIP . F 4 HOH A 8 7012 7012 HOH TIP . F 4 HOH A 9 7015 7015 HOH TIP . F 4 HOH A 10 7016 7016 HOH TIP . F 4 HOH A 11 7017 7017 HOH TIP . F 4 HOH A 12 7018 7018 HOH TIP . F 4 HOH A 13 7019 7019 HOH TIP . F 4 HOH A 14 7020 7020 HOH TIP . F 4 HOH A 15 7021 7021 HOH TIP . F 4 HOH A 16 7022 7022 HOH TIP . F 4 HOH A 17 7023 7023 HOH TIP . F 4 HOH A 18 7024 7024 HOH TIP . F 4 HOH A 19 7025 7025 HOH TIP . F 4 HOH A 20 7027 7027 HOH TIP . F 4 HOH A 21 7028 7028 HOH TIP . F 4 HOH A 22 7029 7029 HOH TIP . F 4 HOH A 23 7030 7030 HOH TIP . F 4 HOH A 24 7031 7031 HOH TIP . F 4 HOH A 25 7032 7032 HOH TIP . F 4 HOH A 26 7033 7033 HOH TIP . F 4 HOH A 27 7034 7034 HOH TIP . F 4 HOH A 28 7036 7036 HOH TIP . F 4 HOH A 29 7037 7037 HOH TIP . F 4 HOH A 30 7040 7040 HOH TIP . F 4 HOH A 31 7044 7044 HOH TIP . F 4 HOH A 32 7048 7048 HOH TIP . F 4 HOH A 33 7049 7049 HOH TIP . F 4 HOH A 34 7050 7050 HOH TIP . F 4 HOH A 35 7051 7051 HOH TIP . F 4 HOH A 36 7052 7052 HOH TIP . F 4 HOH A 37 7053 7053 HOH TIP . F 4 HOH A 38 7055 7055 HOH TIP . F 4 HOH A 39 7056 7056 HOH TIP . F 4 HOH A 40 7057 7057 HOH TIP . F 4 HOH A 41 7058 7058 HOH TIP . F 4 HOH A 42 7059 7059 HOH TIP . F 4 HOH A 43 7061 7061 HOH TIP . F 4 HOH A 44 7062 7062 HOH TIP . F 4 HOH A 45 7063 7063 HOH TIP . F 4 HOH A 46 7064 7064 HOH TIP . F 4 HOH A 47 7066 7066 HOH TIP . F 4 HOH A 48 7067 7067 HOH TIP . F 4 HOH A 49 7068 7068 HOH TIP . F 4 HOH A 50 7069 7069 HOH TIP . F 4 HOH A 51 7070 7070 HOH TIP . F 4 HOH A 52 7073 7073 HOH TIP . F 4 HOH A 53 7074 7074 HOH TIP . F 4 HOH A 54 7075 7075 HOH TIP . F 4 HOH A 55 7076 7076 HOH TIP . F 4 HOH A 56 7077 7077 HOH TIP . F 4 HOH A 57 7078 7078 HOH TIP . F 4 HOH A 58 7080 7080 HOH TIP . F 4 HOH A 59 7082 7082 HOH TIP . F 4 HOH A 60 7083 7083 HOH TIP . F 4 HOH A 61 7090 7090 HOH TIP . F 4 HOH A 62 7123 7123 HOH TIP . F 4 HOH A 63 7141 7141 HOH TIP . F 4 HOH A 64 7156 7156 HOH TIP . F 4 HOH A 65 7158 7158 HOH TIP . F 4 HOH A 66 7159 7159 HOH TIP . F 4 HOH A 67 7160 7160 HOH TIP . F 4 HOH A 68 7163 7163 HOH TIP . F 4 HOH A 69 7164 7164 HOH TIP . F 4 HOH A 70 7165 7165 HOH TIP . F 4 HOH A 71 7166 7166 HOH TIP . F 4 HOH A 72 7167 7167 HOH TIP . F 4 HOH A 73 7168 7168 HOH TIP . F 4 HOH A 74 7170 7170 HOH TIP . F 4 HOH A 75 7173 7173 HOH TIP . F 4 HOH A 76 7186 7186 HOH TIP . F 4 HOH A 77 7187 7187 HOH TIP . F 4 HOH A 78 7189 7189 HOH TIP . F 4 HOH A 79 7190 7190 HOH TIP . F 4 HOH A 80 7191 7191 HOH TIP . F 4 HOH A 81 7192 7192 HOH TIP . F 4 HOH A 82 7193 7193 HOH TIP . F 4 HOH A 83 7194 7194 HOH TIP . F 4 HOH A 84 7195 7195 HOH TIP . F 4 HOH A 85 7196 7196 HOH TIP . F 4 HOH A 86 7197 7197 HOH TIP . F 4 HOH A 87 7198 7198 HOH TIP . F 4 HOH A 88 7199 7199 HOH TIP . F 4 HOH A 89 7200 7200 HOH TIP . F 4 HOH A 90 7201 7201 HOH TIP . F 4 HOH A 91 7202 7202 HOH TIP . F 4 HOH A 92 7203 7203 HOH TIP . F 4 HOH A 93 7204 7204 HOH TIP . F 4 HOH A 94 7207 7207 HOH TIP . F 4 HOH A 95 7208 7208 HOH TIP . F 4 HOH A 96 7215 7215 HOH TIP . F 4 HOH A 97 7220 7220 HOH TIP . F 4 HOH A 98 7221 7221 HOH TIP . F 4 HOH A 99 7222 7222 HOH TIP . F 4 HOH A 100 7223 7223 HOH TIP . F 4 HOH A 101 7234 7234 HOH TIP . F 4 HOH A 102 7237 7237 HOH TIP . F 4 HOH A 103 7238 7238 HOH TIP . F 4 HOH A 104 7240 7240 HOH TIP . F 4 HOH A 105 7241 7241 HOH TIP . F 4 HOH A 106 7245 7245 HOH TIP . F 4 HOH A 107 7246 7246 HOH TIP . F 4 HOH A 108 7247 7247 HOH TIP . F 4 HOH A 109 7248 7248 HOH TIP . F 4 HOH A 110 7249 7249 HOH TIP . G 4 HOH B 1 7005 7005 HOH TIP . G 4 HOH B 2 7006 7006 HOH TIP . G 4 HOH B 3 7007 7007 HOH TIP . G 4 HOH B 4 7026 7026 HOH TIP . G 4 HOH B 5 7035 7035 HOH TIP . G 4 HOH B 6 7038 7038 HOH TIP . G 4 HOH B 7 7039 7039 HOH TIP . G 4 HOH B 8 7041 7041 HOH TIP . G 4 HOH B 9 7042 7042 HOH TIP . G 4 HOH B 10 7045 7045 HOH TIP . G 4 HOH B 11 7046 7046 HOH TIP . G 4 HOH B 12 7047 7047 HOH TIP . G 4 HOH B 13 7084 7084 HOH TIP . G 4 HOH B 14 7086 7086 HOH TIP . G 4 HOH B 15 7087 7087 HOH TIP . G 4 HOH B 16 7088 7088 HOH TIP . G 4 HOH B 17 7089 7089 HOH TIP . G 4 HOH B 18 7091 7091 HOH TIP . G 4 HOH B 19 7092 7092 HOH TIP . G 4 HOH B 20 7093 7093 HOH TIP . G 4 HOH B 21 7094 7094 HOH TIP . G 4 HOH B 22 7095 7095 HOH TIP . G 4 HOH B 23 7096 7096 HOH TIP . G 4 HOH B 24 7097 7097 HOH TIP . G 4 HOH B 25 7098 7098 HOH TIP . G 4 HOH B 26 7099 7099 HOH TIP . G 4 HOH B 27 7101 7101 HOH TIP . G 4 HOH B 28 7102 7102 HOH TIP . G 4 HOH B 29 7103 7103 HOH TIP . G 4 HOH B 30 7104 7104 HOH TIP . G 4 HOH B 31 7105 7105 HOH TIP . G 4 HOH B 32 7107 7107 HOH TIP . G 4 HOH B 33 7108 7108 HOH TIP . G 4 HOH B 34 7109 7109 HOH TIP . G 4 HOH B 35 7110 7110 HOH TIP . G 4 HOH B 36 7111 7111 HOH TIP . G 4 HOH B 37 7112 7112 HOH TIP . G 4 HOH B 38 7113 7113 HOH TIP . G 4 HOH B 39 7114 7114 HOH TIP . G 4 HOH B 40 7115 7115 HOH TIP . G 4 HOH B 41 7116 7116 HOH TIP . G 4 HOH B 42 7117 7117 HOH TIP . G 4 HOH B 43 7118 7118 HOH TIP . G 4 HOH B 44 7119 7119 HOH TIP . G 4 HOH B 45 7120 7120 HOH TIP . G 4 HOH B 46 7121 7121 HOH TIP . G 4 HOH B 47 7127 7127 HOH TIP . G 4 HOH B 48 7128 7128 HOH TIP . G 4 HOH B 49 7129 7129 HOH TIP . G 4 HOH B 50 7131 7131 HOH TIP . G 4 HOH B 51 7132 7132 HOH TIP . G 4 HOH B 52 7133 7133 HOH TIP . G 4 HOH B 53 7134 7134 HOH TIP . G 4 HOH B 54 7135 7135 HOH TIP . G 4 HOH B 55 7136 7136 HOH TIP . G 4 HOH B 56 7137 7137 HOH TIP . G 4 HOH B 57 7138 7138 HOH TIP . G 4 HOH B 58 7139 7139 HOH TIP . G 4 HOH B 59 7140 7140 HOH TIP . G 4 HOH B 60 7142 7142 HOH TIP . G 4 HOH B 61 7143 7143 HOH TIP . G 4 HOH B 62 7144 7144 HOH TIP . G 4 HOH B 63 7145 7145 HOH TIP . G 4 HOH B 64 7146 7146 HOH TIP . G 4 HOH B 65 7147 7147 HOH TIP . G 4 HOH B 66 7148 7148 HOH TIP . G 4 HOH B 67 7149 7149 HOH TIP . G 4 HOH B 68 7151 7151 HOH TIP . G 4 HOH B 69 7152 7152 HOH TIP . G 4 HOH B 70 7153 7153 HOH TIP . G 4 HOH B 71 7154 7154 HOH TIP . G 4 HOH B 72 7155 7155 HOH TIP . G 4 HOH B 73 7161 7161 HOH TIP . G 4 HOH B 74 7162 7162 HOH TIP . G 4 HOH B 75 7172 7172 HOH TIP . G 4 HOH B 76 7174 7174 HOH TIP . G 4 HOH B 77 7175 7175 HOH TIP . G 4 HOH B 78 7176 7176 HOH TIP . G 4 HOH B 79 7177 7177 HOH TIP . G 4 HOH B 80 7178 7178 HOH TIP . G 4 HOH B 81 7180 7180 HOH TIP . G 4 HOH B 82 7181 7181 HOH TIP . G 4 HOH B 83 7182 7182 HOH TIP . G 4 HOH B 84 7183 7183 HOH TIP . G 4 HOH B 85 7184 7184 HOH TIP . G 4 HOH B 86 7185 7185 HOH TIP . G 4 HOH B 87 7188 7188 HOH TIP . G 4 HOH B 88 7209 7209 HOH TIP . G 4 HOH B 89 7210 7210 HOH TIP . G 4 HOH B 90 7211 7211 HOH TIP . G 4 HOH B 91 7212 7212 HOH TIP . G 4 HOH B 92 7213 7213 HOH TIP . G 4 HOH B 93 7214 7214 HOH TIP . G 4 HOH B 94 7216 7216 HOH TIP . G 4 HOH B 95 7217 7217 HOH TIP . G 4 HOH B 96 7218 7218 HOH TIP . G 4 HOH B 97 7219 7219 HOH TIP . G 4 HOH B 98 7224 7224 HOH TIP . G 4 HOH B 99 7225 7225 HOH TIP . G 4 HOH B 100 7227 7227 HOH TIP . G 4 HOH B 101 7228 7228 HOH TIP . G 4 HOH B 102 7229 7229 HOH TIP . G 4 HOH B 103 7230 7230 HOH TIP . G 4 HOH B 104 7231 7231 HOH TIP . G 4 HOH B 105 7232 7232 HOH TIP . G 4 HOH B 106 7233 7233 HOH TIP . G 4 HOH B 107 7242 7242 HOH TIP . G 4 HOH B 108 7243 7243 HOH TIP . G 4 HOH B 109 7244 7244 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PMP . . . C 2 4.386 15.861 -34.29 1 19.59 ? N1 PMP 1434 A 1 HETATM 2 C C2 PMP . . . C 2 4.395 16.897 -35.238 1 20.15 ? C2 PMP 1434 A 1 HETATM 3 C C2A PMP . . . C 2 3.683 16.737 -36.605 1 17.93 ? C2A PMP 1434 A 1 HETATM 4 C C3 PMP . . . C 2 5.051 18.078 -34.932 1 19.87 ? C3 PMP 1434 A 1 HETATM 5 O O3 PMP . . . C 2 5.081 19.116 -35.83 1 20.68 ? O3 PMP 1434 A 1 HETATM 6 C C4 PMP . . . C 2 5.699 18.223 -33.69 1 20.38 ? C4 PMP 1434 A 1 HETATM 7 C C4A PMP . . . C 2 6.401 19.542 -33.41 1 20.88 ? C4A PMP 1434 A 1 HETATM 8 N N4A PMP . . . C 2 7.749 19.309 -33.545 1 24.04 ? N4A PMP 1434 A 1 HETATM 9 C C5 PMP . . . C 2 5.685 17.152 -32.727 1 20.04 ? C5 PMP 1434 A 1 HETATM 10 C C6 PMP . . . C 2 5.023 15.98 -33.046 1 19.06 ? C6 PMP 1434 A 1 HETATM 11 C C5A PMP . . . C 2 6.402 17.29 -31.361 1 18.58 ? C5A PMP 1434 A 1 HETATM 12 O O4P PMP . . . C 2 5.87 18.39 -30.666 1 18.26 ? O4P PMP 1434 A 1 HETATM 13 P P PMP . . . C 2 6.346 18.931 -29.276 1 15.89 ? P PMP 1434 A 1 HETATM 14 O O1P PMP . . . C 2 7.317 19.992 -29.342 1 19.12 ? O1P PMP 1434 A 1 HETATM 15 O O2P PMP . . . C 2 5.06 19.301 -28.669 1 16.36 ? O2P PMP 1434 A 1 HETATM 16 O O3P PMP . . . C 2 7.069 17.68 -28.655 1 15.85 ? O3P PMP 1434 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #