data_3FQC # _model_server_result.job_id 09ccbipMhB3QSer-LYWv8Q _model_server_result.datetime_utc '2024-11-24 12:37:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":207}' # _entry.id 3FQC # _exptl.entry_id 3FQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FQC _cell.length_a 85.982 _cell.length_b 85.982 _cell.length_c 101.462 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 275 n n PA O2A NDP sing 276 n n PA O5B NDP sing 277 n n PA O3 NDP sing 278 n n O2A HOA2 NDP sing 279 n n O5B C5B NDP sing 280 n n C5B C4B NDP sing 281 n n C5B H51A NDP sing 282 n n C5B H52A NDP sing 283 n n C4B O4B NDP sing 284 n n C4B C3B NDP sing 285 n n C4B H4B NDP sing 286 n n O4B C1B NDP sing 287 n n C3B O3B NDP sing 288 n n C3B C2B NDP sing 289 n n C3B H3B NDP sing 290 n n O3B HO3A NDP sing 291 n n C2B O2B NDP sing 292 n n C2B C1B NDP sing 293 n n C2B H2B NDP sing 294 n n O2B P2B NDP sing 295 n n C1B N9A NDP sing 296 n n C1B H1B NDP sing 297 n n N9A C8A NDP sing 298 n y N9A C4A NDP sing 299 n y C8A N7A NDP doub 300 n y C8A H8A NDP sing 301 n n N7A C5A NDP sing 302 n y C5A C6A NDP sing 303 n y C5A C4A NDP doub 304 n y C6A N6A NDP sing 305 n n C6A N1A NDP doub 306 n y N6A H61A NDP sing 307 n n N6A H62A NDP sing 308 n n N1A C2A NDP sing 309 n y C2A N3A NDP doub 310 n y C2A H2A NDP sing 311 n n N3A C4A NDP sing 312 n y O3 PN NDP sing 313 n n PN O1N NDP doub 314 n n PN O2N NDP sing 315 n n PN O5D NDP sing 316 n n O2N H21N NDP sing 317 n n O5D C5D NDP sing 318 n n C5D C4D NDP sing 319 n n C5D H51N NDP sing 320 n n C5D H52N NDP sing 321 n n C4D O4D NDP sing 322 n n C4D C3D NDP sing 323 n n C4D H4D NDP sing 324 n n O4D C1D NDP sing 325 n n C3D O3D NDP sing 326 n n C3D C2D NDP sing 327 n n C3D H3D NDP sing 328 n n O3D HO3N NDP sing 329 n n C2D O2D NDP sing 330 n n C2D C1D NDP sing 331 n n C2D H2D NDP sing 332 n n O2D HO2N NDP sing 333 n n C1D N1N NDP sing 334 n n C1D H1D NDP sing 335 n n N1N C2N NDP sing 336 n n N1N C6N NDP sing 337 n n C2N C3N NDP doub 338 n n C2N H2N NDP sing 339 n n C3N C7N NDP sing 340 n n C3N C4N NDP sing 341 n n C7N O7N NDP doub 342 n n C7N N7N NDP sing 343 n n N7N H71N NDP sing 344 n n N7N H72N NDP sing 345 n n C4N C5N NDP sing 346 n n C4N H41N NDP sing 347 n n C4N H42N NDP sing 348 n n C5N C6N NDP doub 349 n n C5N H5N NDP sing 350 n n C6N H6N NDP sing 351 n n P2B O1X NDP doub 352 n n P2B O2X NDP sing 353 n n P2B O3X NDP sing 354 n n O2X HOP2 NDP sing 355 n n O3X HOP3 NDP sing 356 n n # _atom_sites.entry_id 3FQC _atom_sites.fract_transf_matrix[1][1] 0.01163 _atom_sites.fract_transf_matrix[1][2] 0.006715 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NAP . D 3 55V A 1 219 219 55V 55V . E 2 NDP B 1 207 207 NDP NAP . F 3 55V B 1 219 219 55V 55V . G 4 HOH A 1 158 1 HOH HOH . G 4 HOH A 2 159 4 HOH HOH . G 4 HOH A 3 160 7 HOH HOH . G 4 HOH A 4 161 8 HOH HOH . G 4 HOH A 5 162 11 HOH HOH . G 4 HOH A 6 163 12 HOH HOH . G 4 HOH A 7 164 13 HOH HOH . G 4 HOH A 8 165 14 HOH HOH . G 4 HOH A 9 166 17 HOH HOH . G 4 HOH A 10 167 20 HOH HOH . G 4 HOH A 11 168 21 HOH HOH . G 4 HOH A 12 169 24 HOH HOH . G 4 HOH A 13 170 25 HOH HOH . G 4 HOH A 14 171 27 HOH HOH . G 4 HOH A 15 172 28 HOH HOH . G 4 HOH A 16 173 30 HOH HOH . G 4 HOH A 17 174 31 HOH HOH . G 4 HOH A 18 175 32 HOH HOH . G 4 HOH A 19 176 33 HOH HOH . G 4 HOH A 20 177 37 HOH HOH . G 4 HOH A 21 178 41 HOH HOH . G 4 HOH A 22 179 44 HOH HOH . G 4 HOH A 23 180 45 HOH HOH . G 4 HOH A 24 181 46 HOH HOH . G 4 HOH A 25 182 50 HOH HOH . G 4 HOH A 26 183 53 HOH HOH . G 4 HOH A 27 184 59 HOH HOH . G 4 HOH A 28 185 60 HOH HOH . G 4 HOH A 29 186 61 HOH HOH . G 4 HOH A 30 187 63 HOH HOH . G 4 HOH A 31 188 69 HOH HOH . G 4 HOH A 32 189 70 HOH HOH . G 4 HOH A 33 190 75 HOH HOH . G 4 HOH A 34 191 77 HOH HOH . G 4 HOH A 35 192 85 HOH HOH . G 4 HOH A 36 193 87 HOH HOH . G 4 HOH A 37 194 88 HOH HOH . G 4 HOH A 38 195 93 HOH HOH . G 4 HOH A 39 196 96 HOH HOH . G 4 HOH A 40 197 97 HOH HOH . G 4 HOH A 41 198 100 HOH HOH . G 4 HOH A 42 199 101 HOH HOH . G 4 HOH A 43 200 104 HOH HOH . G 4 HOH A 44 201 105 HOH HOH . G 4 HOH A 45 202 107 HOH HOH . G 4 HOH A 46 203 109 HOH HOH . G 4 HOH A 47 204 111 HOH HOH . G 4 HOH A 48 205 112 HOH HOH . G 4 HOH A 49 206 113 HOH HOH . G 4 HOH A 50 208 114 HOH HOH . G 4 HOH A 51 209 115 HOH HOH . G 4 HOH A 52 210 116 HOH HOH . G 4 HOH A 53 211 127 HOH HOH . G 4 HOH A 54 212 130 HOH HOH . G 4 HOH A 55 213 131 HOH HOH . G 4 HOH A 56 214 132 HOH HOH . G 4 HOH A 57 215 133 HOH HOH . G 4 HOH A 58 216 134 HOH HOH . G 4 HOH A 59 217 135 HOH HOH . G 4 HOH A 60 218 139 HOH HOH . G 4 HOH A 61 220 143 HOH HOH . G 4 HOH A 62 221 146 HOH HOH . G 4 HOH A 63 222 147 HOH HOH . G 4 HOH A 64 223 148 HOH HOH . G 4 HOH A 65 224 149 HOH HOH . G 4 HOH A 66 225 151 HOH HOH . G 4 HOH A 67 226 152 HOH HOH . H 4 HOH B 1 158 2 HOH HOH . H 4 HOH B 2 159 3 HOH HOH . H 4 HOH B 3 160 5 HOH HOH . H 4 HOH B 4 161 6 HOH HOH . H 4 HOH B 5 162 9 HOH HOH . H 4 HOH B 6 163 10 HOH HOH . H 4 HOH B 7 164 15 HOH HOH . H 4 HOH B 8 165 16 HOH HOH . H 4 HOH B 9 166 18 HOH HOH . H 4 HOH B 10 167 19 HOH HOH . H 4 HOH B 11 168 23 HOH HOH . H 4 HOH B 12 169 26 HOH HOH . H 4 HOH B 13 170 29 HOH HOH . H 4 HOH B 14 171 34 HOH HOH . H 4 HOH B 15 172 35 HOH HOH . H 4 HOH B 16 173 36 HOH HOH . H 4 HOH B 17 174 38 HOH HOH . H 4 HOH B 18 175 39 HOH HOH . H 4 HOH B 19 176 40 HOH HOH . H 4 HOH B 20 177 42 HOH HOH . H 4 HOH B 21 178 48 HOH HOH . H 4 HOH B 22 179 54 HOH HOH . H 4 HOH B 23 180 56 HOH HOH . H 4 HOH B 24 181 57 HOH HOH . H 4 HOH B 25 182 58 HOH HOH . H 4 HOH B 26 183 62 HOH HOH . H 4 HOH B 27 184 65 HOH HOH . H 4 HOH B 28 185 68 HOH HOH . H 4 HOH B 29 186 73 HOH HOH . H 4 HOH B 30 187 74 HOH HOH . H 4 HOH B 31 188 78 HOH HOH . H 4 HOH B 32 189 79 HOH HOH . H 4 HOH B 33 190 80 HOH HOH . H 4 HOH B 34 191 81 HOH HOH . H 4 HOH B 35 192 82 HOH HOH . H 4 HOH B 36 193 83 HOH HOH . H 4 HOH B 37 194 84 HOH HOH . H 4 HOH B 38 195 86 HOH HOH . H 4 HOH B 39 196 89 HOH HOH . H 4 HOH B 40 197 90 HOH HOH . H 4 HOH B 41 198 91 HOH HOH . H 4 HOH B 42 199 92 HOH HOH . H 4 HOH B 43 200 94 HOH HOH . H 4 HOH B 44 201 95 HOH HOH . H 4 HOH B 45 202 98 HOH HOH . H 4 HOH B 46 203 99 HOH HOH . H 4 HOH B 47 204 102 HOH HOH . H 4 HOH B 48 205 103 HOH HOH . H 4 HOH B 49 206 106 HOH HOH . H 4 HOH B 50 208 108 HOH HOH . H 4 HOH B 51 209 110 HOH HOH . H 4 HOH B 52 210 120 HOH HOH . H 4 HOH B 53 211 121 HOH HOH . H 4 HOH B 54 212 122 HOH HOH . H 4 HOH B 55 213 123 HOH HOH . H 4 HOH B 56 214 124 HOH HOH . H 4 HOH B 57 215 125 HOH HOH . H 4 HOH B 58 216 126 HOH HOH . H 4 HOH B 59 217 128 HOH HOH . H 4 HOH B 60 218 129 HOH HOH . H 4 HOH B 61 220 136 HOH HOH . H 4 HOH B 62 221 138 HOH HOH . H 4 HOH B 63 222 141 HOH HOH . H 4 HOH B 64 223 142 HOH HOH . H 4 HOH B 65 224 150 HOH HOH . H 4 HOH B 66 225 153 HOH HOH . H 4 HOH B 67 226 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . E 2 -27.425 -17.037 -15.026 1 47.63 ? PA NDP 207 B 1 HETATM 2 O O1A NDP . . . E 2 -26.202 -16.633 -15.744 1 49.07 ? O1A NDP 207 B 1 HETATM 3 O O2A NDP . . . E 2 -28.528 -16.088 -15.201 1 48.22 ? O2A NDP 207 B 1 HETATM 4 O O5B NDP . . . E 2 -27.864 -18.508 -15.493 1 52.66 ? O5B NDP 207 B 1 HETATM 5 C C5B NDP . . . E 2 -26.937 -19.572 -15.49 1 55.23 ? C5B NDP 207 B 1 HETATM 6 C C4B NDP . . . E 2 -27.499 -20.678 -16.363 1 56.92 ? C4B NDP 207 B 1 HETATM 7 O O4B NDP . . . E 2 -27.29 -20.408 -17.734 1 57.29 ? O4B NDP 207 B 1 HETATM 8 C C3B NDP . . . E 2 -26.826 -22.021 -16.131 1 58.3 ? C3B NDP 207 B 1 HETATM 9 O O3B NDP . . . E 2 -27.342 -22.646 -14.983 1 57.35 ? O3B NDP 207 B 1 HETATM 10 C C2B NDP . . . E 2 -27.166 -22.737 -17.421 1 59.17 ? C2B NDP 207 B 1 HETATM 11 O O2B NDP . . . E 2 -28.531 -23.076 -17.399 1 62 ? O2B NDP 207 B 1 HETATM 12 C C1B NDP . . . E 2 -27.09 -21.619 -18.442 1 58.29 ? C1B NDP 207 B 1 HETATM 13 N N9A NDP . . . E 2 -25.793 -21.597 -19.135 1 58.5 ? N9A NDP 207 B 1 HETATM 14 C C8A NDP . . . E 2 -24.753 -20.75 -18.862 1 58.4 ? C8A NDP 207 B 1 HETATM 15 N N7A NDP . . . E 2 -23.742 -21.032 -19.712 1 58.51 ? N7A NDP 207 B 1 HETATM 16 C C5A NDP . . . E 2 -24.116 -22.041 -20.523 1 58.22 ? C5A NDP 207 B 1 HETATM 17 C C6A NDP . . . E 2 -23.467 -22.697 -21.563 1 58.53 ? C6A NDP 207 B 1 HETATM 18 N N6A NDP . . . E 2 -22.23 -22.339 -21.891 1 58.78 ? N6A NDP 207 B 1 HETATM 19 N N1A NDP . . . E 2 -24.111 -23.721 -22.243 1 58.7 ? N1A NDP 207 B 1 HETATM 20 C C2A NDP . . . E 2 -25.397 -24.083 -21.882 1 58.31 ? C2A NDP 207 B 1 HETATM 21 N N3A NDP . . . E 2 -26.034 -23.419 -20.849 1 58.76 ? N3A NDP 207 B 1 HETATM 22 C C4A NDP . . . E 2 -25.409 -22.41 -20.178 1 58.64 ? C4A NDP 207 B 1 HETATM 23 O O3 NDP . . . E 2 -27.19 -17.308 -13.472 1 47.7 ? O3 NDP 207 B 1 HETATM 24 P PN NDP . . . E 2 -26.349 -16.582 -12.327 1 46.68 ? PN NDP 207 B 1 HETATM 25 O O1N NDP . . . E 2 -26.782 -17.187 -11.04 1 48.42 ? O1N NDP 207 B 1 HETATM 26 O O2N NDP . . . E 2 -24.949 -16.659 -12.766 1 46.35 ? O2N NDP 207 B 1 HETATM 27 O O5D NDP . . . E 2 -26.856 -15.055 -12.349 1 46.23 ? O5D NDP 207 B 1 HETATM 28 C C5D NDP . . . E 2 -28.114 -14.72 -11.811 1 45.37 ? C5D NDP 207 B 1 HETATM 29 C C4D NDP . . . E 2 -27.991 -13.479 -10.935 1 45.13 ? C4D NDP 207 B 1 HETATM 30 O O4D NDP . . . E 2 -27.524 -12.376 -11.698 1 44.74 ? O4D NDP 207 B 1 HETATM 31 C C3D NDP . . . E 2 -29.339 -13.078 -10.357 1 44.93 ? C3D NDP 207 B 1 HETATM 32 O O3D NDP . . . E 2 -29.178 -12.741 -8.997 1 43.77 ? O3D NDP 207 B 1 HETATM 33 C C2D NDP . . . E 2 -29.737 -11.861 -11.173 1 45.13 ? C2D NDP 207 B 1 HETATM 34 O O2D NDP . . . E 2 -30.501 -10.959 -10.417 1 47.15 ? O2D NDP 207 B 1 HETATM 35 C C1D NDP . . . E 2 -28.389 -11.267 -11.528 1 43.35 ? C1D NDP 207 B 1 HETATM 36 N N1N NDP . . . E 2 -28.363 -10.413 -12.731 1 43.04 ? N1N NDP 207 B 1 HETATM 37 C C2N NDP . . . E 2 -28.031 -9.096 -12.545 1 42.2 ? C2N NDP 207 B 1 HETATM 38 C C3N NDP . . . E 2 -27.957 -8.219 -13.623 1 40.89 ? C3N NDP 207 B 1 HETATM 39 C C7N NDP . . . E 2 -27.414 -6.845 -13.412 1 38.97 ? C7N NDP 207 B 1 HETATM 40 O O7N NDP . . . E 2 -27.023 -6.146 -14.56 1 38.26 ? O7N NDP 207 B 1 HETATM 41 N N7N NDP . . . E 2 -27.323 -6.317 -12.181 1 36.84 ? N7N NDP 207 B 1 HETATM 42 C C4N NDP . . . E 2 -28.214 -8.688 -14.914 1 41.55 ? C4N NDP 207 B 1 HETATM 43 C C5N NDP . . . E 2 -28.539 -10.034 -15.095 1 41.95 ? C5N NDP 207 B 1 HETATM 44 C C6N NDP . . . E 2 -28.61 -10.891 -13.994 1 42.07 ? C6N NDP 207 B 1 HETATM 45 P P2B NDP . . . E 2 -29.084 -24.555 -17.093 1 62.52 ? P2B NDP 207 B 1 HETATM 46 O O1X NDP . . . E 2 -28.67 -24.966 -15.702 1 61.87 ? O1X NDP 207 B 1 HETATM 47 O O2X NDP . . . E 2 -30.593 -24.516 -17.134 1 62.78 ? O2X NDP 207 B 1 HETATM 48 O O3X NDP . . . E 2 -28.501 -25.459 -18.152 1 61.96 ? O3X NDP 207 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #