data_3FQC # _model_server_result.job_id 3_eMOoB40dBlo0Mx84JLJg _model_server_result.datetime_utc '2024-11-05 06:52:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fqc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":219}' # _entry.id 3FQC # _exptl.entry_id 3FQC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.419 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-methyl-5-[3-methyl-3-(3,4,5-trimethoxyphenyl)but-1-yn-1-yl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FQC _cell.length_a 85.982 _cell.length_b 85.982 _cell.length_c 101.462 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FQC _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C19 H24 N4 O3' _chem_comp.formula_weight 356.419 _chem_comp.id 55V _chem_comp.mon_nstd_flag . _chem_comp.name 6-methyl-5-[3-methyl-3-(3,4,5-trimethoxyphenyl)but-1-yn-1-yl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,4-Diamino-5-[3-(3,4,5-trimethoxyphenyl)pent-1-ynyl]-6-methylpyrimidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1P O1O 55V sing 1 n n C1P H1P 55V sing 2 n n C1P H1PA 55V sing 3 n n C1P H1PB 55V sing 4 n n O1O C1N 55V sing 5 n n C1M C1N 55V doub 6 n y C1N C1Q 55V sing 7 n y C1M C1L 55V sing 8 n y C1M H1M 55V sing 9 n n C1Q O1V 55V sing 10 n n C1Q C1R 55V doub 11 n y O1V C1W 55V sing 12 n n C1W H1W 55V sing 13 n n C1W H1WA 55V sing 14 n n C1W H1WB 55V sing 15 n n C1S C1R 55V sing 16 n y C1R O1T 55V sing 17 n n O1T C1U 55V sing 18 n n C1U H1U 55V sing 19 n n C1U H1UA 55V sing 20 n n C1U H1UB 55V sing 21 n n C1L C1S 55V doub 22 n y C1S H1S 55V sing 23 n n C1J C1L 55V sing 24 n n C1K C1J 55V sing 25 n n C1J C1I 55V sing 26 n n C1J C1X 55V sing 27 n n C1K H1K 55V sing 28 n n C1K H1KA 55V sing 29 n n C1K H1KB 55V sing 30 n n C1X H1X 55V sing 31 n n C1X H1XA 55V sing 32 n n C1X H1XB 55V sing 33 n n C1I C1H 55V trip 34 n n C1H C5 55V sing 35 n n C4 C5 55V doub 36 n y C5 C6 55V sing 37 n y C1Y C4 55V sing 38 n n C4 N3 55V sing 39 n y C1Y H1Y 55V sing 40 n n C1Y H1YA 55V sing 41 n n C1Y H1YB 55V sing 42 n n N3 C2 55V doub 43 n y C2 N1Z 55V sing 44 n n C2 N1 55V sing 45 n y N1Z HN1Z 55V sing 46 n n N1Z HN1A 55V sing 47 n n C6 N1 55V doub 48 n y C6 N1G 55V sing 49 n n N1G HN1G 55V sing 50 n n N1G HN1B 55V sing 51 n n # _atom_sites.entry_id 3FQC _atom_sites.fract_transf_matrix[1][1] 0.01163 _atom_sites.fract_transf_matrix[1][2] 0.006715 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 207 207 NDP NAP . D 3 55V A 1 219 219 55V 55V . E 2 NDP B 1 207 207 NDP NAP . F 3 55V B 1 219 219 55V 55V . G 4 HOH A 1 158 1 HOH HOH . G 4 HOH A 2 159 4 HOH HOH . G 4 HOH A 3 160 7 HOH HOH . G 4 HOH A 4 161 8 HOH HOH . G 4 HOH A 5 162 11 HOH HOH . G 4 HOH A 6 163 12 HOH HOH . G 4 HOH A 7 164 13 HOH HOH . G 4 HOH A 8 165 14 HOH HOH . G 4 HOH A 9 166 17 HOH HOH . G 4 HOH A 10 167 20 HOH HOH . G 4 HOH A 11 168 21 HOH HOH . G 4 HOH A 12 169 24 HOH HOH . G 4 HOH A 13 170 25 HOH HOH . G 4 HOH A 14 171 27 HOH HOH . G 4 HOH A 15 172 28 HOH HOH . G 4 HOH A 16 173 30 HOH HOH . G 4 HOH A 17 174 31 HOH HOH . G 4 HOH A 18 175 32 HOH HOH . G 4 HOH A 19 176 33 HOH HOH . G 4 HOH A 20 177 37 HOH HOH . G 4 HOH A 21 178 41 HOH HOH . G 4 HOH A 22 179 44 HOH HOH . G 4 HOH A 23 180 45 HOH HOH . G 4 HOH A 24 181 46 HOH HOH . G 4 HOH A 25 182 50 HOH HOH . G 4 HOH A 26 183 53 HOH HOH . G 4 HOH A 27 184 59 HOH HOH . G 4 HOH A 28 185 60 HOH HOH . G 4 HOH A 29 186 61 HOH HOH . G 4 HOH A 30 187 63 HOH HOH . G 4 HOH A 31 188 69 HOH HOH . G 4 HOH A 32 189 70 HOH HOH . G 4 HOH A 33 190 75 HOH HOH . G 4 HOH A 34 191 77 HOH HOH . G 4 HOH A 35 192 85 HOH HOH . G 4 HOH A 36 193 87 HOH HOH . G 4 HOH A 37 194 88 HOH HOH . G 4 HOH A 38 195 93 HOH HOH . G 4 HOH A 39 196 96 HOH HOH . G 4 HOH A 40 197 97 HOH HOH . G 4 HOH A 41 198 100 HOH HOH . G 4 HOH A 42 199 101 HOH HOH . G 4 HOH A 43 200 104 HOH HOH . G 4 HOH A 44 201 105 HOH HOH . G 4 HOH A 45 202 107 HOH HOH . G 4 HOH A 46 203 109 HOH HOH . G 4 HOH A 47 204 111 HOH HOH . G 4 HOH A 48 205 112 HOH HOH . G 4 HOH A 49 206 113 HOH HOH . G 4 HOH A 50 208 114 HOH HOH . G 4 HOH A 51 209 115 HOH HOH . G 4 HOH A 52 210 116 HOH HOH . G 4 HOH A 53 211 127 HOH HOH . G 4 HOH A 54 212 130 HOH HOH . G 4 HOH A 55 213 131 HOH HOH . G 4 HOH A 56 214 132 HOH HOH . G 4 HOH A 57 215 133 HOH HOH . G 4 HOH A 58 216 134 HOH HOH . G 4 HOH A 59 217 135 HOH HOH . G 4 HOH A 60 218 139 HOH HOH . G 4 HOH A 61 220 143 HOH HOH . G 4 HOH A 62 221 146 HOH HOH . G 4 HOH A 63 222 147 HOH HOH . G 4 HOH A 64 223 148 HOH HOH . G 4 HOH A 65 224 149 HOH HOH . G 4 HOH A 66 225 151 HOH HOH . G 4 HOH A 67 226 152 HOH HOH . H 4 HOH B 1 158 2 HOH HOH . H 4 HOH B 2 159 3 HOH HOH . H 4 HOH B 3 160 5 HOH HOH . H 4 HOH B 4 161 6 HOH HOH . H 4 HOH B 5 162 9 HOH HOH . H 4 HOH B 6 163 10 HOH HOH . H 4 HOH B 7 164 15 HOH HOH . H 4 HOH B 8 165 16 HOH HOH . H 4 HOH B 9 166 18 HOH HOH . H 4 HOH B 10 167 19 HOH HOH . H 4 HOH B 11 168 23 HOH HOH . H 4 HOH B 12 169 26 HOH HOH . H 4 HOH B 13 170 29 HOH HOH . H 4 HOH B 14 171 34 HOH HOH . H 4 HOH B 15 172 35 HOH HOH . H 4 HOH B 16 173 36 HOH HOH . H 4 HOH B 17 174 38 HOH HOH . H 4 HOH B 18 175 39 HOH HOH . H 4 HOH B 19 176 40 HOH HOH . H 4 HOH B 20 177 42 HOH HOH . H 4 HOH B 21 178 48 HOH HOH . H 4 HOH B 22 179 54 HOH HOH . H 4 HOH B 23 180 56 HOH HOH . H 4 HOH B 24 181 57 HOH HOH . H 4 HOH B 25 182 58 HOH HOH . H 4 HOH B 26 183 62 HOH HOH . H 4 HOH B 27 184 65 HOH HOH . H 4 HOH B 28 185 68 HOH HOH . H 4 HOH B 29 186 73 HOH HOH . H 4 HOH B 30 187 74 HOH HOH . H 4 HOH B 31 188 78 HOH HOH . H 4 HOH B 32 189 79 HOH HOH . H 4 HOH B 33 190 80 HOH HOH . H 4 HOH B 34 191 81 HOH HOH . H 4 HOH B 35 192 82 HOH HOH . H 4 HOH B 36 193 83 HOH HOH . H 4 HOH B 37 194 84 HOH HOH . H 4 HOH B 38 195 86 HOH HOH . H 4 HOH B 39 196 89 HOH HOH . H 4 HOH B 40 197 90 HOH HOH . H 4 HOH B 41 198 91 HOH HOH . H 4 HOH B 42 199 92 HOH HOH . H 4 HOH B 43 200 94 HOH HOH . H 4 HOH B 44 201 95 HOH HOH . H 4 HOH B 45 202 98 HOH HOH . H 4 HOH B 46 203 99 HOH HOH . H 4 HOH B 47 204 102 HOH HOH . H 4 HOH B 48 205 103 HOH HOH . H 4 HOH B 49 206 106 HOH HOH . H 4 HOH B 50 208 108 HOH HOH . H 4 HOH B 51 209 110 HOH HOH . H 4 HOH B 52 210 120 HOH HOH . H 4 HOH B 53 211 121 HOH HOH . H 4 HOH B 54 212 122 HOH HOH . H 4 HOH B 55 213 123 HOH HOH . H 4 HOH B 56 214 124 HOH HOH . H 4 HOH B 57 215 125 HOH HOH . H 4 HOH B 58 216 126 HOH HOH . H 4 HOH B 59 217 128 HOH HOH . H 4 HOH B 60 218 129 HOH HOH . H 4 HOH B 61 220 136 HOH HOH . H 4 HOH B 62 221 138 HOH HOH . H 4 HOH B 63 222 141 HOH HOH . H 4 HOH B 64 223 142 HOH HOH . H 4 HOH B 65 224 150 HOH HOH . H 4 HOH B 66 225 153 HOH HOH . H 4 HOH B 67 226 154 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1P 55V . . . D 3 -31.907 20.577 7.642 1 43.46 ? C1P 55V 219 A 1 HETATM 2 O O1O 55V . . . D 3 -32.662 19.777 8.61 1 43.5 ? O1O 55V 219 A 1 HETATM 3 C C1N 55V . . . D 3 -31.908 18.954 9.411 1 43.81 ? C1N 55V 219 A 1 HETATM 4 C C1M 55V . . . D 3 -30.519 18.867 9.24 1 42.57 ? C1M 55V 219 A 1 HETATM 5 C C1Q 55V . . . D 3 -32.545 18.196 10.409 1 44.14 ? C1Q 55V 219 A 1 HETATM 6 O O1V 55V . . . D 3 -33.926 18.234 10.577 1 45.37 ? O1V 55V 219 A 1 HETATM 7 C C1W 55V . . . D 3 -34.458 19.342 11.334 1 47 ? C1W 55V 219 A 1 HETATM 8 C C1R 55V . . . D 3 -31.776 17.359 11.222 1 43.65 ? C1R 55V 219 A 1 HETATM 9 O O1T 55V . . . D 3 -32.396 16.62 12.186 1 43.28 ? O1T 55V 219 A 1 HETATM 10 C C1U 55V . . . D 3 -31.575 15.602 12.783 1 44.55 ? C1U 55V 219 A 1 HETATM 11 C C1S 55V . . . D 3 -30.389 17.289 11.041 1 43.51 ? C1S 55V 219 A 1 HETATM 12 C C1L 55V . . . D 3 -29.751 18.034 10.051 1 42.12 ? C1L 55V 219 A 1 HETATM 13 C C1J 55V . . . D 3 -28.216 17.942 9.874 1 40.24 ? C1J 55V 219 A 1 HETATM 14 C C1K 55V . . . D 3 -27.847 17.797 8.384 1 40.35 ? C1K 55V 219 A 1 HETATM 15 C C1X 55V . . . D 3 -27.582 19.188 10.482 1 38.95 ? C1X 55V 219 A 1 HETATM 16 C C1I 55V . . . D 3 -27.643 16.71 10.454 1 39.23 ? C1I 55V 219 A 1 HETATM 17 C C1H 55V . . . D 3 -27.221 15.626 10.868 1 39.01 ? C1H 55V 219 A 1 HETATM 18 C C5 55V . . . D 3 -26.829 14.299 11.26 1 38.25 ? C5 55V 219 A 1 HETATM 19 C C4 55V . . . D 3 -27.473 13.212 10.66 1 38.08 ? C4 55V 219 A 1 HETATM 20 C C1Y 55V . . . D 3 -28.576 13.404 9.608 1 38.06 ? C1Y 55V 219 A 1 HETATM 21 N N3 55V . . . D 3 -27.118 11.964 11 1 38.22 ? N3 55V 219 A 1 HETATM 22 C C2 55V . . . D 3 -26.17 11.744 11.911 1 37.87 ? C2 55V 219 A 1 HETATM 23 N N1Z 55V . . . D 3 -25.84 10.501 12.231 1 38.14 ? N1Z 55V 219 A 1 HETATM 24 N N1 55V . . . D 3 -25.541 12.772 12.494 1 37.67 ? N1 55V 219 A 1 HETATM 25 C C6 55V . . . D 3 -25.832 14.041 12.2 1 37.26 ? C6 55V 219 A 1 HETATM 26 N N1G 55V . . . D 3 -25.151 14.993 12.829 1 37.39 ? N1G 55V 219 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #