data_3FQF # _model_server_result.job_id JnEuFk_HyED48ieg-MaDng _model_server_result.datetime_utc '2024-11-05 05:45:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":219}' # _entry.id 3FQF # _exptl.entry_id 3FQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.419 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-methyl-5-[3-methyl-3-(3,4,5-trimethoxyphenyl)but-1-yn-1-yl]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FQF _cell.length_a 79.218 _cell.length_b 79.218 _cell.length_c 108.746 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H24 N4 O3' _chem_comp.formula_weight 356.419 _chem_comp.id 55V _chem_comp.mon_nstd_flag . _chem_comp.name 6-methyl-5-[3-methyl-3-(3,4,5-trimethoxyphenyl)but-1-yn-1-yl]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,4-Diamino-5-[3-(3,4,5-trimethoxyphenyl)pent-1-ynyl]-6-methylpyrimidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1P O1O 55V sing 1 n n C1P H1P 55V sing 2 n n C1P H1PA 55V sing 3 n n C1P H1PB 55V sing 4 n n O1O C1N 55V sing 5 n n C1M C1N 55V doub 6 n y C1N C1Q 55V sing 7 n y C1M C1L 55V sing 8 n y C1M H1M 55V sing 9 n n C1Q O1V 55V sing 10 n n C1Q C1R 55V doub 11 n y O1V C1W 55V sing 12 n n C1W H1W 55V sing 13 n n C1W H1WA 55V sing 14 n n C1W H1WB 55V sing 15 n n C1S C1R 55V sing 16 n y C1R O1T 55V sing 17 n n O1T C1U 55V sing 18 n n C1U H1U 55V sing 19 n n C1U H1UA 55V sing 20 n n C1U H1UB 55V sing 21 n n C1L C1S 55V doub 22 n y C1S H1S 55V sing 23 n n C1J C1L 55V sing 24 n n C1K C1J 55V sing 25 n n C1J C1I 55V sing 26 n n C1J C1X 55V sing 27 n n C1K H1K 55V sing 28 n n C1K H1KA 55V sing 29 n n C1K H1KB 55V sing 30 n n C1X H1X 55V sing 31 n n C1X H1XA 55V sing 32 n n C1X H1XB 55V sing 33 n n C1I C1H 55V trip 34 n n C1H C5 55V sing 35 n n C4 C5 55V doub 36 n y C5 C6 55V sing 37 n y C1Y C4 55V sing 38 n n C4 N3 55V sing 39 n y C1Y H1Y 55V sing 40 n n C1Y H1YA 55V sing 41 n n C1Y H1YB 55V sing 42 n n N3 C2 55V doub 43 n y C2 N1Z 55V sing 44 n n C2 N1 55V sing 45 n y N1Z HN1Z 55V sing 46 n n N1Z HN1A 55V sing 47 n n C6 N1 55V doub 48 n y C6 N1G 55V sing 49 n n N1G HN1G 55V sing 50 n n N1G HN1B 55V sing 51 n n # _atom_sites.entry_id 3FQF _atom_sites.fract_transf_matrix[1][1] 0.012623 _atom_sites.fract_transf_matrix[1][2] 0.007288 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014576 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 55V A 1 219 219 55V 55V . C 3 NDP A 1 207 207 NDP NAP . D 4 HOH A 1 158 1 HOH HOH . D 4 HOH A 2 159 159 HOH HOH . D 4 HOH A 3 160 160 HOH HOH . D 4 HOH A 4 161 2 HOH HOH . D 4 HOH A 5 162 162 HOH HOH . D 4 HOH A 6 163 4 HOH HOH . D 4 HOH A 7 164 164 HOH HOH . D 4 HOH A 8 165 5 HOH HOH . D 4 HOH A 9 166 166 HOH HOH . D 4 HOH A 10 167 167 HOH HOH . D 4 HOH A 11 168 168 HOH HOH . D 4 HOH A 12 169 169 HOH HOH . D 4 HOH A 13 170 170 HOH HOH . D 4 HOH A 14 171 6 HOH HOH . D 4 HOH A 15 172 7 HOH HOH . D 4 HOH A 16 173 8 HOH HOH . D 4 HOH A 17 174 174 HOH HOH . D 4 HOH A 18 175 175 HOH HOH . D 4 HOH A 19 176 9 HOH HOH . D 4 HOH A 20 177 177 HOH HOH . D 4 HOH A 21 178 10 HOH HOH . D 4 HOH A 22 179 11 HOH HOH . D 4 HOH A 23 180 12 HOH HOH . D 4 HOH A 24 181 181 HOH HOH . D 4 HOH A 25 182 182 HOH HOH . D 4 HOH A 26 183 13 HOH HOH . D 4 HOH A 27 184 184 HOH HOH . D 4 HOH A 28 185 185 HOH HOH . D 4 HOH A 29 186 186 HOH HOH . D 4 HOH A 30 187 187 HOH HOH . D 4 HOH A 31 188 188 HOH HOH . D 4 HOH A 32 189 14 HOH HOH . D 4 HOH A 33 190 190 HOH HOH . D 4 HOH A 34 191 191 HOH HOH . D 4 HOH A 35 192 192 HOH HOH . D 4 HOH A 36 193 193 HOH HOH . D 4 HOH A 37 194 194 HOH HOH . D 4 HOH A 38 195 15 HOH HOH . D 4 HOH A 39 196 196 HOH HOH . D 4 HOH A 40 197 16 HOH HOH . D 4 HOH A 41 198 17 HOH HOH . D 4 HOH A 42 199 18 HOH HOH . D 4 HOH A 43 200 200 HOH HOH . D 4 HOH A 44 201 201 HOH HOH . D 4 HOH A 45 202 19 HOH HOH . D 4 HOH A 46 203 203 HOH HOH . D 4 HOH A 47 204 20 HOH HOH . D 4 HOH A 48 205 21 HOH HOH . D 4 HOH A 49 206 22 HOH HOH . D 4 HOH A 50 208 23 HOH HOH . D 4 HOH A 51 209 209 HOH HOH . D 4 HOH A 52 210 210 HOH HOH . D 4 HOH A 53 211 24 HOH HOH . D 4 HOH A 54 212 25 HOH HOH . D 4 HOH A 55 213 213 HOH HOH . D 4 HOH A 56 214 214 HOH HOH . D 4 HOH A 57 215 215 HOH HOH . D 4 HOH A 58 216 216 HOH HOH . D 4 HOH A 59 217 217 HOH HOH . D 4 HOH A 60 218 26 HOH HOH . D 4 HOH A 61 220 220 HOH HOH . D 4 HOH A 62 221 27 HOH HOH . D 4 HOH A 63 222 222 HOH HOH . D 4 HOH A 64 223 223 HOH HOH . D 4 HOH A 65 224 224 HOH HOH . D 4 HOH A 66 225 28 HOH HOH . D 4 HOH A 67 226 29 HOH HOH . D 4 HOH A 68 227 30 HOH HOH . D 4 HOH A 69 228 31 HOH HOH . D 4 HOH A 70 229 32 HOH HOH . D 4 HOH A 71 230 33 HOH HOH . D 4 HOH A 72 231 34 HOH HOH . D 4 HOH A 73 232 35 HOH HOH . D 4 HOH A 74 233 36 HOH HOH . D 4 HOH A 75 234 37 HOH HOH . D 4 HOH A 76 235 38 HOH HOH . D 4 HOH A 77 236 39 HOH HOH . D 4 HOH A 78 237 40 HOH HOH . D 4 HOH A 79 238 41 HOH HOH . D 4 HOH A 80 239 42 HOH HOH . D 4 HOH A 81 240 43 HOH HOH . D 4 HOH A 82 241 44 HOH HOH . D 4 HOH A 83 242 45 HOH HOH . D 4 HOH A 84 243 46 HOH HOH . D 4 HOH A 85 244 47 HOH HOH . D 4 HOH A 86 245 48 HOH HOH . D 4 HOH A 87 246 49 HOH HOH . D 4 HOH A 88 247 50 HOH HOH . D 4 HOH A 89 248 51 HOH HOH . D 4 HOH A 90 249 52 HOH HOH . D 4 HOH A 91 250 53 HOH HOH . D 4 HOH A 92 251 54 HOH HOH . D 4 HOH A 93 252 55 HOH HOH . D 4 HOH A 94 253 56 HOH HOH . D 4 HOH A 95 254 57 HOH HOH . D 4 HOH A 96 255 58 HOH HOH . D 4 HOH A 97 256 59 HOH HOH . D 4 HOH A 98 257 60 HOH HOH . D 4 HOH A 99 258 61 HOH HOH . D 4 HOH A 100 259 62 HOH HOH . D 4 HOH A 101 260 63 HOH HOH . D 4 HOH A 102 261 64 HOH HOH . D 4 HOH A 103 262 65 HOH HOH . D 4 HOH A 104 263 66 HOH HOH . D 4 HOH A 105 264 68 HOH HOH . D 4 HOH A 106 265 69 HOH HOH . D 4 HOH A 107 266 70 HOH HOH . D 4 HOH A 108 267 71 HOH HOH . D 4 HOH A 109 268 72 HOH HOH . D 4 HOH A 110 269 73 HOH HOH . D 4 HOH A 111 270 74 HOH HOH . D 4 HOH A 112 271 75 HOH HOH . D 4 HOH A 113 272 76 HOH HOH . D 4 HOH A 114 273 77 HOH HOH . D 4 HOH A 115 274 78 HOH HOH . D 4 HOH A 116 275 79 HOH HOH . D 4 HOH A 117 276 81 HOH HOH . D 4 HOH A 118 277 83 HOH HOH . D 4 HOH A 119 278 84 HOH HOH . D 4 HOH A 120 279 85 HOH HOH . D 4 HOH A 121 280 86 HOH HOH . D 4 HOH A 122 281 87 HOH HOH . D 4 HOH A 123 282 88 HOH HOH . D 4 HOH A 124 283 89 HOH HOH . D 4 HOH A 125 284 92 HOH HOH . D 4 HOH A 126 285 93 HOH HOH . D 4 HOH A 127 286 94 HOH HOH . D 4 HOH A 128 287 95 HOH HOH . D 4 HOH A 129 288 96 HOH HOH . D 4 HOH A 130 289 97 HOH HOH . D 4 HOH A 131 290 98 HOH HOH . D 4 HOH A 132 291 99 HOH HOH . D 4 HOH A 133 292 100 HOH HOH . D 4 HOH A 134 293 101 HOH HOH . D 4 HOH A 135 294 102 HOH HOH . D 4 HOH A 136 295 103 HOH HOH . D 4 HOH A 137 296 105 HOH HOH . D 4 HOH A 138 297 106 HOH HOH . D 4 HOH A 139 298 107 HOH HOH . D 4 HOH A 140 299 109 HOH HOH . D 4 HOH A 141 300 110 HOH HOH . D 4 HOH A 142 301 111 HOH HOH . D 4 HOH A 143 302 112 HOH HOH . D 4 HOH A 144 303 113 HOH HOH . D 4 HOH A 145 304 114 HOH HOH . D 4 HOH A 146 305 115 HOH HOH . D 4 HOH A 147 306 116 HOH HOH . D 4 HOH A 148 307 117 HOH HOH . D 4 HOH A 149 308 118 HOH HOH . D 4 HOH A 150 309 119 HOH HOH . D 4 HOH A 151 310 120 HOH HOH . D 4 HOH A 152 311 121 HOH HOH . D 4 HOH A 153 312 122 HOH HOH . D 4 HOH A 154 313 123 HOH HOH . D 4 HOH A 155 314 125 HOH HOH . D 4 HOH A 156 315 126 HOH HOH . D 4 HOH A 157 316 127 HOH HOH . D 4 HOH A 158 317 128 HOH HOH . D 4 HOH A 159 318 129 HOH HOH . D 4 HOH A 160 319 130 HOH HOH . D 4 HOH A 161 320 131 HOH HOH . D 4 HOH A 162 321 132 HOH HOH . D 4 HOH A 163 322 133 HOH HOH . D 4 HOH A 164 323 134 HOH HOH . D 4 HOH A 165 324 135 HOH HOH . D 4 HOH A 166 325 136 HOH HOH . D 4 HOH A 167 326 137 HOH HOH . D 4 HOH A 168 327 138 HOH HOH . D 4 HOH A 169 328 139 HOH HOH . D 4 HOH A 170 329 141 HOH HOH . D 4 HOH A 171 330 142 HOH HOH . D 4 HOH A 172 331 143 HOH HOH . D 4 HOH A 173 332 144 HOH HOH . D 4 HOH A 174 333 145 HOH HOH . D 4 HOH A 175 334 147 HOH HOH . D 4 HOH A 176 335 149 HOH HOH . D 4 HOH A 177 336 150 HOH HOH . D 4 HOH A 178 337 151 HOH HOH . D 4 HOH A 179 338 153 HOH HOH . D 4 HOH A 180 339 154 HOH HOH . D 4 HOH A 181 340 155 HOH HOH . D 4 HOH A 182 341 156 HOH HOH . D 4 HOH A 183 342 157 HOH HOH . D 4 HOH A 184 343 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1P 55V . . . B 2 -31.951 -15.06 47.498 1 12.68 ? C1P 55V 219 A 1 HETATM 2 O O1O 55V . . . B 2 -32.886 -14.174 46.847 1 12.88 ? O1O 55V 219 A 1 HETATM 3 C C1N 55V . . . B 2 -32.539 -13.728 45.583 1 12.22 ? C1N 55V 219 A 1 HETATM 4 C C1M 55V . . . B 2 -31.345 -14.106 44.958 1 10.76 ? C1M 55V 219 A 1 HETATM 5 C C1Q 55V . . . B 2 -33.415 -12.863 44.91 1 11.87 ? C1Q 55V 219 A 1 HETATM 6 O O1V 55V . . . B 2 -34.592 -12.472 45.494 1 13.42 ? O1V 55V 219 A 1 HETATM 7 C C1W 55V . . . B 2 -35.617 -13.455 45.198 1 14.72 ? C1W 55V 219 A 1 HETATM 8 C C1R 55V . . . B 2 -33.116 -12.383 43.637 1 11.9 ? C1R 55V 219 A 1 HETATM 9 O O1T 55V . . . B 2 -34.009 -11.534 43.033 1 11.27 ? O1T 55V 219 A 1 HETATM 10 C C1U 55V . . . B 2 -33.759 -11.254 41.641 1 10.55 ? C1U 55V 219 A 1 HETATM 11 C C1S 55V . . . B 2 -31.924 -12.762 43.025 1 10.7 ? C1S 55V 219 A 1 HETATM 12 C C1L 55V . . . B 2 -31.036 -13.625 43.676 1 10.76 ? C1L 55V 219 A 1 HETATM 13 C C1J 55V . . . B 2 -29.741 -14.027 42.967 1 9.4 ? C1J 55V 219 A 1 HETATM 14 C C1K 55V . . . B 2 -28.762 -14.671 43.943 1 9.15 ? C1K 55V 219 A 1 HETATM 15 C C1X 55V . . . B 2 -30.08 -15.04 41.872 1 8.8 ? C1X 55V 219 A 1 HETATM 16 C C1I 55V . . . B 2 -29.12 -12.806 42.421 1 8.89 ? C1I 55V 219 A 1 HETATM 17 C C1H 55V . . . B 2 -28.637 -11.757 41.999 1 9 ? C1H 55V 219 A 1 HETATM 18 C C5 55V . . . B 2 -28.129 -10.484 41.554 1 7.84 ? C5 55V 219 A 1 HETATM 19 C C4 55V . . . B 2 -28.638 -9.301 42.094 1 8.74 ? C4 55V 219 A 1 HETATM 20 C C1Y 55V . . . B 2 -29.743 -9.336 43.149 1 8.39 ? C1Y 55V 219 A 1 HETATM 21 N N3 55V . . . B 2 -28.158 -8.11 41.689 1 8.06 ? N3 55V 219 A 1 HETATM 22 C C2 55V . . . B 2 -27.191 -8.049 40.754 1 8.8 ? C2 55V 219 A 1 HETATM 23 N N1Z 55V . . . B 2 -26.745 -6.859 40.354 1 7.65 ? N1Z 55V 219 A 1 HETATM 24 N N1 55V . . . B 2 -26.69 -9.177 40.21 1 7.76 ? N1 55V 219 A 1 HETATM 25 C C6 55V . . . B 2 -27.13 -10.394 40.588 1 8.56 ? C6 55V 219 A 1 HETATM 26 N N1G 55V . . . B 2 -26.608 -11.497 40.054 1 7.71 ? N1G 55V 219 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #