data_3FQQ # _model_server_result.job_id 2HQkoBm8D9vQMFpOBirjAg _model_server_result.datetime_utc '2024-11-16 07:03:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1}' # _entry.id 3FQQ # _exptl.entry_id 3FQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FQQ _cell.length_a 57.106 _cell.length_b 57.106 _cell.length_c 197.365 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 9 A CYS 39 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc2 A SG CYS 27 A CYS 57 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc3 A SG CYS 29 A CYS 59 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc4 A SG CYS 50 A CYS 80 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc5 B SG CYS 9 B CYS 39 1_555 F ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc6 B SG CYS 27 B CYS 57 1_555 F ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc7 B SG CYS 29 B CYS 59 1_555 F ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc8 B SG CYS 50 B CYS 80 1_555 F ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 202 n n C1 C2 GOL sing 203 n n C1 H11 GOL sing 204 n n C1 H12 GOL sing 205 n n O1 HO1 GOL sing 206 n n C2 O2 GOL sing 207 n n C2 C3 GOL sing 208 n n C2 H2 GOL sing 209 n n O2 HO2 GOL sing 210 n n C3 O3 GOL sing 211 n n C3 H31 GOL sing 212 n n C3 H32 GOL sing 213 n n O3 HO3 GOL sing 214 n n # _atom_sites.entry_id 3FQQ _atom_sites.fract_transf_matrix[1][1] 0.017511 _atom_sites.fract_transf_matrix[1][2] 0.01011 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 901 901 ZN ZN . D 3 GOL A 1 1 1 GOL GOL . E 4 0BD A 1 2 2 0BD 0BD . F 2 ZN B 1 902 902 ZN ZN . G 5 HOH A 1 5 5 HOH HOH . G 5 HOH A 2 6 6 HOH HOH . G 5 HOH A 3 7 7 HOH HOH . G 5 HOH A 4 10 10 HOH HOH . G 5 HOH A 5 12 12 HOH HOH . G 5 HOH A 6 14 14 HOH HOH . G 5 HOH A 7 16 16 HOH HOH . G 5 HOH A 8 18 18 HOH HOH . G 5 HOH A 9 19 19 HOH HOH . G 5 HOH A 10 21 21 HOH HOH . G 5 HOH A 11 24 24 HOH HOH . G 5 HOH A 12 26 26 HOH HOH . G 5 HOH A 13 27 27 HOH HOH . G 5 HOH A 14 30 30 HOH HOH . G 5 HOH A 15 208 31 HOH HOH . G 5 HOH A 16 209 32 HOH HOH . G 5 HOH A 17 210 33 HOH HOH . G 5 HOH A 18 211 36 HOH HOH . G 5 HOH A 19 212 37 HOH HOH . G 5 HOH A 20 213 38 HOH HOH . G 5 HOH A 21 214 39 HOH HOH . G 5 HOH A 22 215 40 HOH HOH . G 5 HOH A 23 216 41 HOH HOH . G 5 HOH A 24 217 43 HOH HOH . G 5 HOH A 25 218 44 HOH HOH . G 5 HOH A 26 219 46 HOH HOH . G 5 HOH A 27 220 48 HOH HOH . G 5 HOH A 28 221 52 HOH HOH . G 5 HOH A 29 222 54 HOH HOH . G 5 HOH A 30 223 60 HOH HOH . G 5 HOH A 31 224 61 HOH HOH . G 5 HOH A 32 225 62 HOH HOH . G 5 HOH A 33 226 63 HOH HOH . G 5 HOH A 34 227 64 HOH HOH . G 5 HOH A 35 228 66 HOH HOH . G 5 HOH A 36 229 71 HOH HOH . G 5 HOH A 37 230 72 HOH HOH . G 5 HOH A 38 231 78 HOH HOH . G 5 HOH A 39 232 80 HOH HOH . G 5 HOH A 40 233 85 HOH HOH . G 5 HOH A 41 234 87 HOH HOH . G 5 HOH A 42 235 89 HOH HOH . G 5 HOH A 43 236 92 HOH HOH . G 5 HOH A 44 237 95 HOH HOH . G 5 HOH A 45 238 97 HOH HOH . G 5 HOH A 46 239 98 HOH HOH . G 5 HOH A 47 240 100 HOH HOH . G 5 HOH A 48 241 103 HOH HOH . G 5 HOH A 49 242 104 HOH HOH . G 5 HOH A 50 243 105 HOH HOH . G 5 HOH A 51 244 107 HOH HOH . G 5 HOH A 52 245 109 HOH HOH . G 5 HOH A 53 246 112 HOH HOH . G 5 HOH A 54 247 113 HOH HOH . G 5 HOH A 55 248 115 HOH HOH . G 5 HOH A 56 249 116 HOH HOH . G 5 HOH A 57 250 117 HOH HOH . G 5 HOH A 58 251 119 HOH HOH . G 5 HOH A 59 252 121 HOH HOH . G 5 HOH A 60 253 123 HOH HOH . G 5 HOH A 61 254 127 HOH HOH . G 5 HOH A 62 255 130 HOH HOH . G 5 HOH A 63 256 132 HOH HOH . G 5 HOH A 64 257 133 HOH HOH . G 5 HOH A 65 258 135 HOH HOH . G 5 HOH A 66 259 138 HOH HOH . G 5 HOH A 67 260 141 HOH HOH . G 5 HOH A 68 261 144 HOH HOH . G 5 HOH A 69 262 146 HOH HOH . G 5 HOH A 70 263 147 HOH HOH . G 5 HOH A 71 264 150 HOH HOH . G 5 HOH A 72 265 154 HOH HOH . G 5 HOH A 73 266 155 HOH HOH . G 5 HOH A 74 267 158 HOH HOH . G 5 HOH A 75 268 159 HOH HOH . G 5 HOH A 76 269 160 HOH HOH . G 5 HOH A 77 270 162 HOH HOH . G 5 HOH A 78 271 163 HOH HOH . G 5 HOH A 79 272 168 HOH HOH . G 5 HOH A 80 273 172 HOH HOH . G 5 HOH A 81 274 175 HOH HOH . G 5 HOH A 82 275 176 HOH HOH . G 5 HOH A 83 276 177 HOH HOH . G 5 HOH A 84 277 179 HOH HOH . G 5 HOH A 85 278 181 HOH HOH . G 5 HOH A 86 279 182 HOH HOH . G 5 HOH A 87 280 183 HOH HOH . G 5 HOH A 88 281 185 HOH HOH . G 5 HOH A 89 282 187 HOH HOH . G 5 HOH A 90 283 188 HOH HOH . G 5 HOH A 91 284 189 HOH HOH . G 5 HOH A 92 285 190 HOH HOH . G 5 HOH A 93 286 191 HOH HOH . G 5 HOH A 94 287 192 HOH HOH . G 5 HOH A 95 288 194 HOH HOH . G 5 HOH A 96 289 195 HOH HOH . G 5 HOH A 97 290 196 HOH HOH . G 5 HOH A 98 291 198 HOH HOH . G 5 HOH A 99 292 199 HOH HOH . G 5 HOH A 100 293 200 HOH HOH . G 5 HOH A 101 294 201 HOH HOH . G 5 HOH A 102 295 202 HOH HOH . G 5 HOH A 103 296 205 HOH HOH . H 5 HOH B 1 3 3 HOH HOH . H 5 HOH B 2 4 4 HOH HOH . H 5 HOH B 3 8 8 HOH HOH . H 5 HOH B 4 9 9 HOH HOH . H 5 HOH B 5 11 11 HOH HOH . H 5 HOH B 6 13 13 HOH HOH . H 5 HOH B 7 15 15 HOH HOH . H 5 HOH B 8 17 17 HOH HOH . H 5 HOH B 9 20 20 HOH HOH . H 5 HOH B 10 22 22 HOH HOH . H 5 HOH B 11 23 23 HOH HOH . H 5 HOH B 12 25 25 HOH HOH . H 5 HOH B 13 28 28 HOH HOH . H 5 HOH B 14 29 29 HOH HOH . H 5 HOH B 15 208 34 HOH HOH . H 5 HOH B 16 209 35 HOH HOH . H 5 HOH B 17 210 42 HOH HOH . H 5 HOH B 18 211 45 HOH HOH . H 5 HOH B 19 212 47 HOH HOH . H 5 HOH B 20 213 49 HOH HOH . H 5 HOH B 21 214 50 HOH HOH . H 5 HOH B 22 215 51 HOH HOH . H 5 HOH B 23 216 53 HOH HOH . H 5 HOH B 24 217 55 HOH HOH . H 5 HOH B 25 218 56 HOH HOH . H 5 HOH B 26 219 57 HOH HOH . H 5 HOH B 27 220 58 HOH HOH . H 5 HOH B 28 221 59 HOH HOH . H 5 HOH B 29 222 65 HOH HOH . H 5 HOH B 30 223 67 HOH HOH . H 5 HOH B 31 224 68 HOH HOH . H 5 HOH B 32 225 69 HOH HOH . H 5 HOH B 33 226 70 HOH HOH . H 5 HOH B 34 227 73 HOH HOH . H 5 HOH B 35 228 74 HOH HOH . H 5 HOH B 36 229 75 HOH HOH . H 5 HOH B 37 230 76 HOH HOH . H 5 HOH B 38 231 77 HOH HOH . H 5 HOH B 39 232 79 HOH HOH . H 5 HOH B 40 233 81 HOH HOH . H 5 HOH B 41 234 82 HOH HOH . H 5 HOH B 42 235 83 HOH HOH . H 5 HOH B 43 236 84 HOH HOH . H 5 HOH B 44 237 86 HOH HOH . H 5 HOH B 45 238 88 HOH HOH . H 5 HOH B 46 239 90 HOH HOH . H 5 HOH B 47 240 91 HOH HOH . H 5 HOH B 48 241 93 HOH HOH . H 5 HOH B 49 242 94 HOH HOH . H 5 HOH B 50 243 96 HOH HOH . H 5 HOH B 51 244 99 HOH HOH . H 5 HOH B 52 245 101 HOH HOH . H 5 HOH B 53 246 102 HOH HOH . H 5 HOH B 54 247 106 HOH HOH . H 5 HOH B 55 248 108 HOH HOH . H 5 HOH B 56 249 110 HOH HOH . H 5 HOH B 57 250 111 HOH HOH . H 5 HOH B 58 251 114 HOH HOH . H 5 HOH B 59 252 118 HOH HOH . H 5 HOH B 60 253 120 HOH HOH . H 5 HOH B 61 254 122 HOH HOH . H 5 HOH B 62 255 124 HOH HOH . H 5 HOH B 63 256 125 HOH HOH . H 5 HOH B 64 257 126 HOH HOH . H 5 HOH B 65 258 128 HOH HOH . H 5 HOH B 66 259 129 HOH HOH . H 5 HOH B 67 260 131 HOH HOH . H 5 HOH B 68 261 134 HOH HOH . H 5 HOH B 69 262 136 HOH HOH . H 5 HOH B 70 263 137 HOH HOH . H 5 HOH B 71 264 139 HOH HOH . H 5 HOH B 72 265 140 HOH HOH . H 5 HOH B 73 266 142 HOH HOH . H 5 HOH B 74 267 143 HOH HOH . H 5 HOH B 75 268 145 HOH HOH . H 5 HOH B 76 269 148 HOH HOH . H 5 HOH B 77 270 149 HOH HOH . H 5 HOH B 78 271 151 HOH HOH . H 5 HOH B 79 272 152 HOH HOH . H 5 HOH B 80 273 153 HOH HOH . H 5 HOH B 81 274 156 HOH HOH . H 5 HOH B 82 275 157 HOH HOH . H 5 HOH B 83 276 161 HOH HOH . H 5 HOH B 84 277 164 HOH HOH . H 5 HOH B 85 278 165 HOH HOH . H 5 HOH B 86 279 166 HOH HOH . H 5 HOH B 87 280 167 HOH HOH . H 5 HOH B 88 281 169 HOH HOH . H 5 HOH B 89 282 170 HOH HOH . H 5 HOH B 90 283 171 HOH HOH . H 5 HOH B 91 284 173 HOH HOH . H 5 HOH B 92 285 174 HOH HOH . H 5 HOH B 93 286 178 HOH HOH . H 5 HOH B 94 287 180 HOH HOH . H 5 HOH B 95 288 184 HOH HOH . H 5 HOH B 96 289 186 HOH HOH . H 5 HOH B 97 290 193 HOH HOH . H 5 HOH B 98 291 197 HOH HOH . H 5 HOH B 99 292 203 HOH HOH . H 5 HOH B 100 293 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 21.929 -6.353 21.249 1 26.14 ? C1 GOL 1 A 1 HETATM 2 O O1 GOL . . . D 3 21.843 -6.383 22.659 1 27.89 ? O1 GOL 1 A 1 HETATM 3 C C2 GOL . . . D 3 23.059 -5.405 20.953 1 25.14 ? C2 GOL 1 A 1 HETATM 4 O O2 GOL . . . D 3 24.185 -6.172 21.276 1 27.36 ? O2 GOL 1 A 1 HETATM 5 C C3 GOL . . . D 3 23.088 -4.985 19.491 1 25.61 ? C3 GOL 1 A 1 HETATM 6 O O3 GOL . . . D 3 24.384 -4.498 19.15 1 25.53 ? O3 GOL 1 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #