data_3FQV # _model_server_result.job_id 47FKokfifdUXFpjIgwy3Uw _model_server_result.datetime_utc '2024-11-05 05:32:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fqv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":219}' # _entry.id 3FQV # _exptl.entry_id 3FQV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.436 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(3S)-3-(2-methoxybiphenyl-4-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FQV _cell.length_a 78.897 _cell.length_b 78.897 _cell.length_c 108.189 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FQV _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H22 N4 O' _chem_comp.formula_weight 358.436 _chem_comp.id 11F _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(3S)-3-(2-methoxybiphenyl-4-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,4-Diamino-5-[3S-(3-methoxy-4-phenylphenyl)but-1-ynyl]-6-methylpyrimidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1V C1K 11F doub 1 n y C1K C1I 11F sing 2 n y C1K H1K 11F sing 3 n n C1I C1H 11F doub 4 n y C1I H1I 11F sing 5 n n C1J C1H 11F sing 6 n y C1H H1H 11F sing 7 n n C1L C1J 11F doub 8 n y C1J H1J 11F sing 9 n n C1V C1L 11F sing 10 n y C1L H1L 11F sing 11 n n C1Z C1V 11F sing 12 n y C1Y C1Z 11F doub 13 n y C1N C1Z 11F sing 14 n y C1O C1Y 11F sing 15 n y C1Y O1R 11F sing 16 n n C1W C1O 11F doub 17 n y C1O H1O 11F sing 18 n n C1A O1R 11F sing 19 n n C1A H1A 11F sing 20 n n C1A H1AA 11F sing 21 n n C1A H1AB 11F sing 22 n n C1M C1N 11F doub 23 n y C1N H1N 11F sing 24 n n C1W C1M 11F sing 25 n y C1M H1M 11F sing 26 n n C2A C1W 11F sing 27 n n C1G C2A 11F sing 28 n n C2A C1C 11F sing 29 n n C2A H2A 11F sing 30 n n C1C H1C 11F sing 31 n n C1C H1CA 11F sing 32 n n C1C H1CB 11F sing 33 n n C1F C1G 11F trip 34 n n C5 C1F 11F sing 35 n n C4 C5 11F doub 36 n y C5 C6 11F sing 37 n y N1 C6 11F doub 38 n y C6 C1B 11F sing 39 n n C1B H1B 11F sing 40 n n C1B H1BA 11F sing 41 n n C1B H1BB 11F sing 42 n n C2 N1 11F sing 43 n y N3 C2 11F doub 44 n y N1D C2 11F sing 45 n n N1D HN1D 11F sing 46 n n N1D HN1A 11F sing 47 n n N3 C4 11F sing 48 n y N1E C4 11F sing 49 n n N1E HN1E 11F sing 50 n n N1E HN1B 11F sing 51 n n # _atom_sites.entry_id 3FQV _atom_sites.fract_transf_matrix[1][1] 0.012675 _atom_sites.fract_transf_matrix[1][2] 0.007318 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009243 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 207 207 NDP NAP . C 3 11F A 1 219 219 11F 11F . D 4 HOH A 1 158 158 HOH HOH . D 4 HOH A 2 159 159 HOH HOH . D 4 HOH A 3 160 160 HOH HOH . D 4 HOH A 4 161 1 HOH HOH . D 4 HOH A 5 162 2 HOH HOH . D 4 HOH A 6 163 163 HOH HOH . D 4 HOH A 7 164 164 HOH HOH . D 4 HOH A 8 165 165 HOH HOH . D 4 HOH A 9 166 3 HOH HOH . D 4 HOH A 10 167 4 HOH HOH . D 4 HOH A 11 168 5 HOH HOH . D 4 HOH A 12 169 6 HOH HOH . D 4 HOH A 13 170 7 HOH HOH . D 4 HOH A 14 171 8 HOH HOH . D 4 HOH A 15 172 9 HOH HOH . D 4 HOH A 16 173 10 HOH HOH . D 4 HOH A 17 174 11 HOH HOH . D 4 HOH A 18 175 12 HOH HOH . D 4 HOH A 19 176 13 HOH HOH . D 4 HOH A 20 177 14 HOH HOH . D 4 HOH A 21 178 15 HOH HOH . D 4 HOH A 22 179 16 HOH HOH . D 4 HOH A 23 180 17 HOH HOH . D 4 HOH A 24 181 18 HOH HOH . D 4 HOH A 25 182 19 HOH HOH . D 4 HOH A 26 183 20 HOH HOH . D 4 HOH A 27 184 21 HOH HOH . D 4 HOH A 28 185 22 HOH HOH . D 4 HOH A 29 186 23 HOH HOH . D 4 HOH A 30 187 24 HOH HOH . D 4 HOH A 31 188 25 HOH HOH . D 4 HOH A 32 189 26 HOH HOH . D 4 HOH A 33 190 27 HOH HOH . D 4 HOH A 34 191 28 HOH HOH . D 4 HOH A 35 192 29 HOH HOH . D 4 HOH A 36 193 30 HOH HOH . D 4 HOH A 37 194 31 HOH HOH . D 4 HOH A 38 195 32 HOH HOH . D 4 HOH A 39 196 33 HOH HOH . D 4 HOH A 40 197 34 HOH HOH . D 4 HOH A 41 198 35 HOH HOH . D 4 HOH A 42 199 36 HOH HOH . D 4 HOH A 43 200 37 HOH HOH . D 4 HOH A 44 201 38 HOH HOH . D 4 HOH A 45 202 39 HOH HOH . D 4 HOH A 46 203 41 HOH HOH . D 4 HOH A 47 204 42 HOH HOH . D 4 HOH A 48 205 43 HOH HOH . D 4 HOH A 49 206 44 HOH HOH . D 4 HOH A 50 208 45 HOH HOH . D 4 HOH A 51 209 46 HOH HOH . D 4 HOH A 52 210 47 HOH HOH . D 4 HOH A 53 211 48 HOH HOH . D 4 HOH A 54 212 49 HOH HOH . D 4 HOH A 55 213 50 HOH HOH . D 4 HOH A 56 214 51 HOH HOH . D 4 HOH A 57 215 52 HOH HOH . D 4 HOH A 58 216 53 HOH HOH . D 4 HOH A 59 217 54 HOH HOH . D 4 HOH A 60 218 55 HOH HOH . D 4 HOH A 61 220 56 HOH HOH . D 4 HOH A 62 221 57 HOH HOH . D 4 HOH A 63 222 58 HOH HOH . D 4 HOH A 64 223 59 HOH HOH . D 4 HOH A 65 224 60 HOH HOH . D 4 HOH A 66 225 61 HOH HOH . D 4 HOH A 67 226 62 HOH HOH . D 4 HOH A 68 227 63 HOH HOH . D 4 HOH A 69 228 64 HOH HOH . D 4 HOH A 70 229 65 HOH HOH . D 4 HOH A 71 230 66 HOH HOH . D 4 HOH A 72 231 67 HOH HOH . D 4 HOH A 73 232 68 HOH HOH . D 4 HOH A 74 233 70 HOH HOH . D 4 HOH A 75 234 71 HOH HOH . D 4 HOH A 76 235 72 HOH HOH . D 4 HOH A 77 236 73 HOH HOH . D 4 HOH A 78 237 74 HOH HOH . D 4 HOH A 79 238 75 HOH HOH . D 4 HOH A 80 239 76 HOH HOH . D 4 HOH A 81 240 77 HOH HOH . D 4 HOH A 82 241 78 HOH HOH . D 4 HOH A 83 242 79 HOH HOH . D 4 HOH A 84 243 81 HOH HOH . D 4 HOH A 85 244 82 HOH HOH . D 4 HOH A 86 245 83 HOH HOH . D 4 HOH A 87 246 84 HOH HOH . D 4 HOH A 88 247 85 HOH HOH . D 4 HOH A 89 248 86 HOH HOH . D 4 HOH A 90 249 87 HOH HOH . D 4 HOH A 91 250 88 HOH HOH . D 4 HOH A 92 251 90 HOH HOH . D 4 HOH A 93 252 91 HOH HOH . D 4 HOH A 94 253 92 HOH HOH . D 4 HOH A 95 254 94 HOH HOH . D 4 HOH A 96 255 96 HOH HOH . D 4 HOH A 97 256 99 HOH HOH . D 4 HOH A 98 257 100 HOH HOH . D 4 HOH A 99 258 101 HOH HOH . D 4 HOH A 100 259 103 HOH HOH . D 4 HOH A 101 260 104 HOH HOH . D 4 HOH A 102 261 105 HOH HOH . D 4 HOH A 103 262 107 HOH HOH . D 4 HOH A 104 263 108 HOH HOH . D 4 HOH A 105 264 109 HOH HOH . D 4 HOH A 106 265 110 HOH HOH . D 4 HOH A 107 266 111 HOH HOH . D 4 HOH A 108 267 112 HOH HOH . D 4 HOH A 109 268 113 HOH HOH . D 4 HOH A 110 269 114 HOH HOH . D 4 HOH A 111 270 115 HOH HOH . D 4 HOH A 112 271 116 HOH HOH . D 4 HOH A 113 272 117 HOH HOH . D 4 HOH A 114 273 118 HOH HOH . D 4 HOH A 115 274 119 HOH HOH . D 4 HOH A 116 275 120 HOH HOH . D 4 HOH A 117 276 121 HOH HOH . D 4 HOH A 118 277 122 HOH HOH . D 4 HOH A 119 278 123 HOH HOH . D 4 HOH A 120 279 124 HOH HOH . D 4 HOH A 121 280 125 HOH HOH . D 4 HOH A 122 281 126 HOH HOH . D 4 HOH A 123 282 127 HOH HOH . D 4 HOH A 124 283 128 HOH HOH . D 4 HOH A 125 284 129 HOH HOH . D 4 HOH A 126 285 130 HOH HOH . D 4 HOH A 127 286 131 HOH HOH . D 4 HOH A 128 287 133 HOH HOH . D 4 HOH A 129 288 134 HOH HOH . D 4 HOH A 130 289 136 HOH HOH . D 4 HOH A 131 290 137 HOH HOH . D 4 HOH A 132 291 138 HOH HOH . D 4 HOH A 133 292 139 HOH HOH . D 4 HOH A 134 293 140 HOH HOH . D 4 HOH A 135 294 141 HOH HOH . D 4 HOH A 136 295 142 HOH HOH . D 4 HOH A 137 296 144 HOH HOH . D 4 HOH A 138 297 145 HOH HOH . D 4 HOH A 139 298 147 HOH HOH . D 4 HOH A 140 299 150 HOH HOH . D 4 HOH A 141 300 151 HOH HOH . D 4 HOH A 142 301 152 HOH HOH . D 4 HOH A 143 302 153 HOH HOH . D 4 HOH A 144 303 154 HOH HOH . D 4 HOH A 145 304 155 HOH HOH . D 4 HOH A 146 305 156 HOH HOH . D 4 HOH A 147 306 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1K 11F . A . C 3 -32.598 -12.819 48.325 0.4 9.01 ? C1K 11F 219 A 1 HETATM 2 C C1K 11F . B . C 3 -34.882 -10.926 45.265 0.6 21.71 ? C1K 11F 219 A 1 HETATM 3 C C1I 11F . A . C 3 -33.347 -12.867 49.501 0.4 9.26 ? C1I 11F 219 A 1 HETATM 4 C C1I 11F . B . C 3 -36.095 -10.557 45.849 0.6 21.85 ? C1I 11F 219 A 1 HETATM 5 C C1H 11F . A . C 3 -34.092 -14.006 49.811 0.4 9.23 ? C1H 11F 219 A 1 HETATM 6 C C1H 11F . B . C 3 -37.082 -11.518 46.072 0.6 21.68 ? C1H 11F 219 A 1 HETATM 7 C C1J 11F . A . C 3 -34.084 -15.102 48.949 0.4 9.4 ? C1J 11F 219 A 1 HETATM 8 C C1J 11F . B . C 3 -36.857 -12.847 45.712 0.6 21.97 ? C1J 11F 219 A 1 HETATM 9 C C1L 11F . A . C 3 -33.335 -15.051 47.773 0.4 9.32 ? C1L 11F 219 A 1 HETATM 10 C C1L 11F . B . C 3 -35.645 -13.216 45.127 0.6 21.7 ? C1L 11F 219 A 1 HETATM 11 C C1V 11F . A . C 3 -32.588 -13.911 47.457 0.4 8.31 ? C1V 11F 219 A 1 HETATM 12 C C1V 11F . B . C 3 -34.655 -12.255 44.901 0.6 21.27 ? C1V 11F 219 A 1 HETATM 13 C C1Z 11F . A . C 3 -31.853 -13.893 46.271 0.4 8.62 ? C1Z 11F 219 A 1 HETATM 14 C C1Z 11F . B . C 3 -33.447 -12.633 44.315 0.6 21.28 ? C1Z 11F 219 A 1 HETATM 15 C C1Y 11F . A . C 3 -32.151 -12.99 45.238 0.4 8.37 ? C1Y 11F 219 A 1 HETATM 16 C C1Y 11F . B . C 3 -33.191 -12.371 42.963 0.6 21.64 ? C1Y 11F 219 A 1 HETATM 17 C C1O 11F . A . C 3 -31.39 -13.01 44.06 0.4 8.56 ? C1O 11F 219 A 1 HETATM 18 C C1O 11F . B . C 3 -31.976 -12.767 42.401 0.6 21.12 ? C1O 11F 219 A 1 HETATM 19 O O1R 11F . A . C 3 -33.162 -12.081 45.394 0.4 8.21 ? O1R 11F 219 A 1 HETATM 20 O O1R 11F . B . C 3 -34.131 -11.742 42.195 0.6 21.65 ? O1R 11F 219 A 1 HETATM 21 C C1A 11F . A . C 3 -33.65 -11.49 44.168 0.4 8.11 ? C1A 11F 219 A 1 HETATM 22 C C1A 11F . B . C 3 -33.583 -11.036 41.066 0.6 22.66 ? C1A 11F 219 A 1 HETATM 23 C C1N 11F . A . C 3 -30.815 -14.812 46.109 0.4 8.16 ? C1N 11F 219 A 1 HETATM 24 C C1N 11F . B . C 3 -32.485 -13.279 45.095 0.6 21.33 ? C1N 11F 219 A 1 HETATM 25 C C1M 11F . A . C 3 -30.075 -14.824 44.93 0.4 8.19 ? C1M 11F 219 A 1 HETATM 26 C C1M 11F . B . C 3 -31.271 -13.667 44.529 0.6 21.23 ? C1M 11F 219 A 1 HETATM 27 C C1W 11F . A . C 3 -30.347 -13.92 43.903 0.4 7.95 ? C1W 11F 219 A 1 HETATM 28 C C1W 11F . B . C 3 -31.014 -13.409 43.178 0.6 20.65 ? C1W 11F 219 A 1 HETATM 29 C C2A 11F . A . C 3 -29.534 -13.952 42.59 0.4 6.65 ? C2A 11F 219 A 1 HETATM 30 C C2A 11F . B . C 3 -29.691 -13.831 42.522 0.6 19.6 ? C2A 11F 219 A 1 HETATM 31 C C1C 11F . A . C 3 -28.323 -14.853 42.727 0.4 8.41 ? C1C 11F 219 A 1 HETATM 32 C C1C 11F . B . C 3 -28.787 -14.486 43.549 0.6 19.22 ? C1C 11F 219 A 1 HETATM 33 C C1G 11F . A . C 3 -29.048 -12.64 42.162 0.4 6.17 ? C1G 11F 219 A 1 HETATM 34 C C1G 11F . B . C 3 -29.034 -12.64 41.983 0.6 19.07 ? C1G 11F 219 A 1 HETATM 35 C C1F 11F . A . C 3 -28.609 -11.582 41.77 0.4 6.13 ? C1F 11F 219 A 1 HETATM 36 C C1F 11F . B . C 3 -28.529 -11.625 41.572 0.6 19.06 ? C1F 11F 219 A 1 HETATM 37 C C5 11F . A . C 3 -28.079 -10.342 41.295 0.4 5.64 ? C5 11F 219 A 1 HETATM 38 C C5 11F . B . C 3 -27.974 -10.385 41.128 0.6 18.85 ? C5 11F 219 A 1 HETATM 39 C C6 11F . A . C 3 -28.546 -9.134 41.802 0.4 5.84 ? C6 11F 219 A 1 HETATM 40 C C6 11F . B . C 3 -28.454 -9.182 41.64 0.6 18.95 ? C6 11F 219 A 1 HETATM 41 C C1B 11F . A . C 3 -29.627 -9.1 42.878 0.4 5.57 ? C1B 11F 219 A 1 HETATM 42 C C1B 11F . B . C 3 -29.574 -9.152 42.681 0.6 18.69 ? C1B 11F 219 A 1 HETATM 43 N N1 11F . A . C 3 -28.031 -7.984 41.342 0.4 5.65 ? N1 11F 219 A 1 HETATM 44 N N1 11F . B . C 3 -27.921 -8.027 41.213 0.6 18.86 ? N1 11F 219 A 1 HETATM 45 C C2 11F . A . C 3 -27.079 -7.98 40.394 0.4 5.93 ? C2 11F 219 A 1 HETATM 46 C C2 11F . B . C 3 -26.939 -8.015 40.297 0.6 18.95 ? C2 11F 219 A 1 HETATM 47 N N1D 11F . A . C 3 -26.595 -6.822 39.952 0.4 5.57 ? N1D 11F 219 A 1 HETATM 48 N N1D 11F . B . C 3 -26.435 -6.854 39.889 0.6 18.72 ? N1D 11F 219 A 1 HETATM 49 N N3 11F . A . C 3 -26.619 -9.134 39.883 0.4 5.39 ? N3 11F 219 A 1 HETATM 50 N N3 11F . B . C 3 -26.468 -9.164 39.787 0.6 18.68 ? N3 11F 219 A 1 HETATM 51 C C4 11F . A . C 3 -27.091 -10.316 40.31 0.4 5.96 ? C4 11F 219 A 1 HETATM 52 C C4 11F . B . C 3 -26.956 -10.351 40.179 0.6 18.97 ? C4 11F 219 A 1 HETATM 53 N N1E 11F . A . C 3 -26.607 -11.442 39.789 0.4 5.33 ? N1E 11F 219 A 1 HETATM 54 N N1E 11F . B . C 3 -26.462 -11.472 39.661 0.6 18.51 ? N1E 11F 219 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #