data_3FQY # _model_server_result.job_id Xh8yCYGs6y0OhzRUYbHcCg _model_server_result.datetime_utc '2024-10-18 17:18:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fqy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":131}' # _entry.id 3FQY # _exptl.entry_id 3FQY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FQY _cell.length_a 48.93 _cell.length_b 55.08 _cell.length_c 94.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FQY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc1 A N ALA 1 A ALA 1 1_555 C CU CU . A CU 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc2 A O ALA 1 A ALA 1 1_555 C CU CU . A CU 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc3 A O GLY 45 A GLY 45 1_555 B CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc4 A ND1 HIS 46 A HIS 46 1_555 B CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 A OD2 ASP 112 A ASP 112 1_555 B CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc6 A ND1 HIS 117 A HIS 117 1_555 B CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc7 C CU CU . A CU 130 1_555 D N TRS . A TRS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc8 C CU CU . A CU 130 1_555 D O3 TRS . A TRS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc9 C CU CU . A CU 130 1_555 E O HOH . A HOH 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 3FQY _atom_sites.fract_transf_matrix[1][1] 0.020437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018155 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 129 1 CU CU . C 2 CU A 1 130 2 CU CU . D 3 TRS A 1 131 1 TRS TRS . E 4 HOH A 1 132 1 HOH HOH . E 4 HOH A 2 133 2 HOH HOH . E 4 HOH A 3 134 3 HOH HOH . E 4 HOH A 4 135 4 HOH HOH . E 4 HOH A 5 136 5 HOH HOH . E 4 HOH A 6 137 6 HOH HOH . E 4 HOH A 7 138 7 HOH HOH . E 4 HOH A 8 139 8 HOH HOH . E 4 HOH A 9 140 9 HOH HOH . E 4 HOH A 10 141 10 HOH HOH . E 4 HOH A 11 142 11 HOH HOH . E 4 HOH A 12 143 12 HOH HOH . E 4 HOH A 13 144 13 HOH HOH . E 4 HOH A 14 145 14 HOH HOH . E 4 HOH A 15 146 15 HOH HOH . E 4 HOH A 16 147 16 HOH HOH . E 4 HOH A 17 148 17 HOH HOH . E 4 HOH A 18 149 18 HOH HOH . E 4 HOH A 19 150 19 HOH HOH . E 4 HOH A 20 151 20 HOH HOH . E 4 HOH A 21 152 21 HOH HOH . E 4 HOH A 22 153 22 HOH HOH . E 4 HOH A 23 154 23 HOH HOH . E 4 HOH A 24 155 24 HOH HOH . E 4 HOH A 25 156 25 HOH HOH . E 4 HOH A 26 157 26 HOH HOH . E 4 HOH A 27 158 27 HOH HOH . E 4 HOH A 28 159 28 HOH HOH . E 4 HOH A 29 160 29 HOH HOH . E 4 HOH A 30 161 30 HOH HOH . E 4 HOH A 31 162 31 HOH HOH . E 4 HOH A 32 163 32 HOH HOH . E 4 HOH A 33 164 33 HOH HOH . E 4 HOH A 34 165 34 HOH HOH . E 4 HOH A 35 166 35 HOH HOH . E 4 HOH A 36 167 36 HOH HOH . E 4 HOH A 37 168 37 HOH HOH . E 4 HOH A 38 169 38 HOH HOH . E 4 HOH A 39 170 39 HOH HOH . E 4 HOH A 40 171 40 HOH HOH . E 4 HOH A 41 172 41 HOH HOH . E 4 HOH A 42 173 42 HOH HOH . E 4 HOH A 43 174 43 HOH HOH . E 4 HOH A 44 175 44 HOH HOH . E 4 HOH A 45 176 45 HOH HOH . E 4 HOH A 46 177 46 HOH HOH . E 4 HOH A 47 178 47 HOH HOH . E 4 HOH A 48 179 48 HOH HOH . E 4 HOH A 49 180 49 HOH HOH . E 4 HOH A 50 181 50 HOH HOH . E 4 HOH A 51 182 51 HOH HOH . E 4 HOH A 52 183 52 HOH HOH . E 4 HOH A 53 184 53 HOH HOH . E 4 HOH A 54 185 54 HOH HOH . E 4 HOH A 55 186 55 HOH HOH . E 4 HOH A 56 187 56 HOH HOH . E 4 HOH A 57 188 57 HOH HOH . E 4 HOH A 58 189 58 HOH HOH . E 4 HOH A 59 190 59 HOH HOH . E 4 HOH A 60 191 60 HOH HOH . E 4 HOH A 61 192 61 HOH HOH . E 4 HOH A 62 193 62 HOH HOH . E 4 HOH A 63 194 63 HOH HOH . E 4 HOH A 64 195 64 HOH HOH . E 4 HOH A 65 196 65 HOH HOH . E 4 HOH A 66 197 66 HOH HOH . E 4 HOH A 67 198 67 HOH HOH . E 4 HOH A 68 199 68 HOH HOH . E 4 HOH A 69 200 69 HOH HOH . E 4 HOH A 70 201 70 HOH HOH . E 4 HOH A 71 202 71 HOH HOH . E 4 HOH A 72 203 72 HOH HOH . E 4 HOH A 73 204 73 HOH HOH . E 4 HOH A 74 205 74 HOH HOH . E 4 HOH A 75 206 75 HOH HOH . E 4 HOH A 76 207 76 HOH HOH . E 4 HOH A 77 208 77 HOH HOH . E 4 HOH A 78 209 78 HOH HOH . E 4 HOH A 79 210 79 HOH HOH . E 4 HOH A 80 211 80 HOH HOH . E 4 HOH A 81 212 81 HOH HOH . E 4 HOH A 82 213 83 HOH HOH . E 4 HOH A 83 214 84 HOH HOH . E 4 HOH A 84 215 85 HOH HOH . E 4 HOH A 85 216 86 HOH HOH . E 4 HOH A 86 217 87 HOH HOH . E 4 HOH A 87 218 88 HOH HOH . E 4 HOH A 88 219 89 HOH HOH . E 4 HOH A 89 220 90 HOH HOH . E 4 HOH A 90 221 92 HOH HOH . E 4 HOH A 91 222 93 HOH HOH . E 4 HOH A 92 223 94 HOH HOH . E 4 HOH A 93 224 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 3 23.825 9.922 4.951 1 25.09 ? C TRS 131 A 1 HETATM 2 C C1 TRS . . . D 3 24.671 9.952 6.236 1 23.66 ? C1 TRS 131 A 1 HETATM 3 C C2 TRS . . . D 3 24.356 8.786 4.022 1 26.65 ? C2 TRS 131 A 1 HETATM 4 C C3 TRS . . . D 3 22.459 9.394 5.461 1 22.89 ? C3 TRS 131 A 1 HETATM 5 N N TRS . . . D 3 23.589 11.408 4.529 1 22.83 ? N TRS 131 A 1 HETATM 6 O O1 TRS . . . D 3 24.713 8.663 6.826 1 29.12 ? O1 TRS 131 A 1 HETATM 7 O O2 TRS . . . D 3 25.717 8.968 3.577 1 25.25 ? O2 TRS 131 A 1 HETATM 8 O O3 TRS . . . D 3 21.503 9.478 4.43 1 22.13 ? O3 TRS 131 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 8 #