data_3FQZ # _model_server_result.job_id 9ShL_VjGYKjqYvf6Xlv9Vw _model_server_result.datetime_utc '2024-10-21 20:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":219}' # _entry.id 3FQZ # _exptl.entry_id 3FQZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(3S)-3-(2-methoxybiphenyl-4-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FQZ _cell.length_a 79.054 _cell.length_b 79.054 _cell.length_c 108.34 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H22 N4 O' _chem_comp.formula_weight 358.436 _chem_comp.id 11F _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(3S)-3-(2-methoxybiphenyl-4-yl)but-1-yn-1-yl]-6-methylpyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2,4-Diamino-5-[3S-(3-methoxy-4-phenylphenyl)but-1-ynyl]-6-methylpyrimidine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1V C1K 11F doub 1 n y C1K C1I 11F sing 2 n y C1K H1K 11F sing 3 n n C1I C1H 11F doub 4 n y C1I H1I 11F sing 5 n n C1J C1H 11F sing 6 n y C1H H1H 11F sing 7 n n C1L C1J 11F doub 8 n y C1J H1J 11F sing 9 n n C1V C1L 11F sing 10 n y C1L H1L 11F sing 11 n n C1Z C1V 11F sing 12 n y C1Y C1Z 11F doub 13 n y C1N C1Z 11F sing 14 n y C1O C1Y 11F sing 15 n y C1Y O1R 11F sing 16 n n C1W C1O 11F doub 17 n y C1O H1O 11F sing 18 n n C1A O1R 11F sing 19 n n C1A H1A 11F sing 20 n n C1A H1AA 11F sing 21 n n C1A H1AB 11F sing 22 n n C1M C1N 11F doub 23 n y C1N H1N 11F sing 24 n n C1W C1M 11F sing 25 n y C1M H1M 11F sing 26 n n C2A C1W 11F sing 27 n n C1G C2A 11F sing 28 n n C2A C1C 11F sing 29 n n C2A H2A 11F sing 30 n n C1C H1C 11F sing 31 n n C1C H1CA 11F sing 32 n n C1C H1CB 11F sing 33 n n C1F C1G 11F trip 34 n n C5 C1F 11F sing 35 n n C4 C5 11F doub 36 n y C5 C6 11F sing 37 n y N1 C6 11F doub 38 n y C6 C1B 11F sing 39 n n C1B H1B 11F sing 40 n n C1B H1BA 11F sing 41 n n C1B H1BB 11F sing 42 n n C2 N1 11F sing 43 n y N3 C2 11F doub 44 n y N1D C2 11F sing 45 n n N1D HN1D 11F sing 46 n n N1D HN1A 11F sing 47 n n N3 C4 11F sing 48 n y N1E C4 11F sing 49 n n N1E HN1E 11F sing 50 n n N1E HN1B 11F sing 51 n n # _atom_sites.entry_id 3FQZ _atom_sites.fract_transf_matrix[1][1] 0.01265 _atom_sites.fract_transf_matrix[1][2] 0.007303 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 11F A 1 219 219 11F 11F . C 3 NDP A 1 207 207 NDP NAP . D 4 HOH A 1 158 1 HOH HOH . D 4 HOH A 2 159 2 HOH HOH . D 4 HOH A 3 160 3 HOH HOH . D 4 HOH A 4 161 4 HOH HOH . D 4 HOH A 5 162 5 HOH HOH . D 4 HOH A 6 163 6 HOH HOH . D 4 HOH A 7 164 7 HOH HOH . D 4 HOH A 8 165 8 HOH HOH . D 4 HOH A 9 166 9 HOH HOH . D 4 HOH A 10 167 10 HOH HOH . D 4 HOH A 11 168 11 HOH HOH . D 4 HOH A 12 169 12 HOH HOH . D 4 HOH A 13 170 13 HOH HOH . D 4 HOH A 14 171 14 HOH HOH . D 4 HOH A 15 172 15 HOH HOH . D 4 HOH A 16 173 16 HOH HOH . D 4 HOH A 17 174 17 HOH HOH . D 4 HOH A 18 175 18 HOH HOH . D 4 HOH A 19 176 19 HOH HOH . D 4 HOH A 20 177 20 HOH HOH . D 4 HOH A 21 178 21 HOH HOH . D 4 HOH A 22 179 22 HOH HOH . D 4 HOH A 23 180 23 HOH HOH . D 4 HOH A 24 181 24 HOH HOH . D 4 HOH A 25 182 25 HOH HOH . D 4 HOH A 26 183 26 HOH HOH . D 4 HOH A 27 184 27 HOH HOH . D 4 HOH A 28 185 28 HOH HOH . D 4 HOH A 29 186 29 HOH HOH . D 4 HOH A 30 187 30 HOH HOH . D 4 HOH A 31 188 31 HOH HOH . D 4 HOH A 32 189 32 HOH HOH . D 4 HOH A 33 190 33 HOH HOH . D 4 HOH A 34 191 34 HOH HOH . D 4 HOH A 35 192 35 HOH HOH . D 4 HOH A 36 193 36 HOH HOH . D 4 HOH A 37 194 37 HOH HOH . D 4 HOH A 38 195 38 HOH HOH . D 4 HOH A 39 196 39 HOH HOH . D 4 HOH A 40 197 40 HOH HOH . D 4 HOH A 41 198 41 HOH HOH . D 4 HOH A 42 199 42 HOH HOH . D 4 HOH A 43 200 43 HOH HOH . D 4 HOH A 44 201 44 HOH HOH . D 4 HOH A 45 202 45 HOH HOH . D 4 HOH A 46 203 46 HOH HOH . D 4 HOH A 47 204 47 HOH HOH . D 4 HOH A 48 205 48 HOH HOH . D 4 HOH A 49 206 49 HOH HOH . D 4 HOH A 50 208 50 HOH HOH . D 4 HOH A 51 209 51 HOH HOH . D 4 HOH A 52 210 52 HOH HOH . D 4 HOH A 53 211 53 HOH HOH . D 4 HOH A 54 212 54 HOH HOH . D 4 HOH A 55 213 55 HOH HOH . D 4 HOH A 56 214 56 HOH HOH . D 4 HOH A 57 215 57 HOH HOH . D 4 HOH A 58 216 58 HOH HOH . D 4 HOH A 59 217 59 HOH HOH . D 4 HOH A 60 218 60 HOH HOH . D 4 HOH A 61 220 61 HOH HOH . D 4 HOH A 62 221 62 HOH HOH . D 4 HOH A 63 222 63 HOH HOH . D 4 HOH A 64 223 64 HOH HOH . D 4 HOH A 65 224 65 HOH HOH . D 4 HOH A 66 225 66 HOH HOH . D 4 HOH A 67 226 67 HOH HOH . D 4 HOH A 68 227 68 HOH HOH . D 4 HOH A 69 228 69 HOH HOH . D 4 HOH A 70 229 70 HOH HOH . D 4 HOH A 71 230 71 HOH HOH . D 4 HOH A 72 231 72 HOH HOH . D 4 HOH A 73 232 73 HOH HOH . D 4 HOH A 74 233 74 HOH HOH . D 4 HOH A 75 234 75 HOH HOH . D 4 HOH A 76 235 76 HOH HOH . D 4 HOH A 77 236 77 HOH HOH . D 4 HOH A 78 237 78 HOH HOH . D 4 HOH A 79 238 79 HOH HOH . D 4 HOH A 80 239 80 HOH HOH . D 4 HOH A 81 240 81 HOH HOH . D 4 HOH A 82 241 82 HOH HOH . D 4 HOH A 83 242 83 HOH HOH . D 4 HOH A 84 243 84 HOH HOH . D 4 HOH A 85 244 85 HOH HOH . D 4 HOH A 86 245 86 HOH HOH . D 4 HOH A 87 246 87 HOH HOH . D 4 HOH A 88 247 88 HOH HOH . D 4 HOH A 89 248 89 HOH HOH . D 4 HOH A 90 249 90 HOH HOH . D 4 HOH A 91 250 91 HOH HOH . D 4 HOH A 92 251 92 HOH HOH . D 4 HOH A 93 252 93 HOH HOH . D 4 HOH A 94 253 94 HOH HOH . D 4 HOH A 95 254 95 HOH HOH . D 4 HOH A 96 255 96 HOH HOH . D 4 HOH A 97 256 97 HOH HOH . D 4 HOH A 98 257 98 HOH HOH . D 4 HOH A 99 258 99 HOH HOH . D 4 HOH A 100 259 100 HOH HOH . D 4 HOH A 101 260 101 HOH HOH . D 4 HOH A 102 261 102 HOH HOH . D 4 HOH A 103 262 103 HOH HOH . D 4 HOH A 104 263 104 HOH HOH . D 4 HOH A 105 264 105 HOH HOH . D 4 HOH A 106 265 106 HOH HOH . D 4 HOH A 107 266 107 HOH HOH . D 4 HOH A 108 267 108 HOH HOH . D 4 HOH A 109 268 109 HOH HOH . D 4 HOH A 110 269 110 HOH HOH . D 4 HOH A 111 270 111 HOH HOH . D 4 HOH A 112 271 112 HOH HOH . D 4 HOH A 113 272 113 HOH HOH . D 4 HOH A 114 273 114 HOH HOH . D 4 HOH A 115 274 115 HOH HOH . D 4 HOH A 116 275 116 HOH HOH . D 4 HOH A 117 276 117 HOH HOH . D 4 HOH A 118 277 118 HOH HOH . D 4 HOH A 119 278 119 HOH HOH . D 4 HOH A 120 279 121 HOH HOH . D 4 HOH A 121 280 122 HOH HOH . D 4 HOH A 122 281 124 HOH HOH . D 4 HOH A 123 282 125 HOH HOH . D 4 HOH A 124 283 126 HOH HOH . D 4 HOH A 125 284 128 HOH HOH . D 4 HOH A 126 285 129 HOH HOH . D 4 HOH A 127 286 130 HOH HOH . D 4 HOH A 128 287 132 HOH HOH . D 4 HOH A 129 288 133 HOH HOH . D 4 HOH A 130 289 134 HOH HOH . D 4 HOH A 131 290 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1K 11F . A . B 2 -34.773 -11.145 45.827 0.6 22.61 ? C1K 11F 219 A 1 HETATM 2 C C1K 11F . B . B 2 -32.723 -12.843 48.386 0.4 7.24 ? C1K 11F 219 A 1 HETATM 3 C C1I 11F . A . B 2 -35.958 -10.82 46.493 0.6 23.02 ? C1I 11F 219 A 1 HETATM 4 C C1I 11F . B . B 2 -33.508 -12.884 49.537 0.4 8.68 ? C1I 11F 219 A 1 HETATM 5 C C1H 11F . A . B 2 -36.932 -11.798 46.693 0.6 22.73 ? C1H 11F 219 A 1 HETATM 6 C C1H 11F . B . B 2 -34.158 -14.064 49.898 0.4 7.91 ? C1H 11F 219 A 1 HETATM 7 C C1J 11F . A . B 2 -36.725 -13.1 46.233 0.6 23.17 ? C1J 11F 219 A 1 HETATM 8 C C1J 11F . B . B 2 -34.018 -15.206 49.105 0.4 7.91 ? C1J 11F 219 A 1 HETATM 9 C C1L 11F . A . B 2 -35.542 -13.426 45.568 0.6 22.64 ? C1L 11F 219 A 1 HETATM 10 C C1L 11F . B . B 2 -33.236 -15.161 47.949 0.4 7.56 ? C1L 11F 219 A 1 HETATM 11 C C1V 11F . A . B 2 -34.563 -12.448 45.366 0.6 21.81 ? C1V 11F 219 A 1 HETATM 12 C C1V 11F . B . B 2 -32.579 -13.978 47.585 0.4 6.1 ? C1V 11F 219 A 1 HETATM 13 C C1Z 11F . A . B 2 -33.382 -12.774 44.696 0.6 21.67 ? C1Z 11F 219 A 1 HETATM 14 C C1Z 11F . B . B 2 -31.807 -13.953 46.423 0.4 6.73 ? C1Z 11F 219 A 1 HETATM 15 C C1Y 11F . A . B 2 -33.198 -12.404 43.357 0.6 21.65 ? C1Y 11F 219 A 1 HETATM 16 C C1Y 11F . B . B 2 -32.046 -13.001 45.415 0.4 6.69 ? C1Y 11F 219 A 1 HETATM 17 C C1O 11F . A . B 2 -32.009 -12.731 42.701 0.6 21.21 ? C1O 11F 219 A 1 HETATM 18 C C1O 11F . B . B 2 -31.259 -12.994 44.259 0.4 7.03 ? C1O 11F 219 A 1 HETATM 19 O O1R 11F . A . B 2 -34.165 -11.71 42.683 0.6 22.22 ? O1R 11F 219 A 1 HETATM 20 O O1R 11F . B . B 2 -33.022 -12.06 45.583 0.4 6.09 ? O1R 11F 219 A 1 HETATM 21 C C1A 11F . A . B 2 -35.067 -12.593 41.98 0.6 23.24 ? C1A 11F 219 A 1 HETATM 22 C C1A 11F . B . B 2 -33.598 -11.522 44.364 0.4 8 ? C1A 11F 219 A 1 HETATM 23 C C1N 11F . A . B 2 -32.382 -13.476 45.367 0.6 21.62 ? C1N 11F 219 A 1 HETATM 24 C C1N 11F . B . B 2 -30.795 -14.903 46.247 0.4 6.16 ? C1N 11F 219 A 1 HETATM 25 C C1M 11F . A . B 2 -31.198 -13.805 44.709 0.6 21.46 ? C1M 11F 219 A 1 HETATM 26 C C1M 11F . B . B 2 -30.029 -14.89 45.084 0.4 6.31 ? C1M 11F 219 A 1 HETATM 27 C C1W 11F . A . B 2 -31.007 -13.432 43.373 0.6 20.89 ? C1W 11F 219 A 1 HETATM 28 C C1W 11F . B . B 2 -30.246 -13.93 44.089 0.4 5.53 ? C1W 11F 219 A 1 HETATM 29 C C2A 11F . A . B 2 -29.716 -13.8 42.628 0.6 19.6 ? C2A 11F 219 A 1 HETATM 30 C C2A 11F . B . B 2 -29.415 -13.94 42.79 0.4 3.61 ? C2A 11F 219 A 1 HETATM 31 C C1C 11F . A . B 2 -28.755 -14.513 43.565 0.6 19.3 ? C1C 11F 219 A 1 HETATM 32 C C1C 11F . B . B 2 -28.209 -14.833 42.946 0.4 5.27 ? C1C 11F 219 A 1 HETATM 33 C C1G 11F . A . B 2 -29.08 -12.585 42.113 0.6 18.99 ? C1G 11F 219 A 1 HETATM 34 C C1G 11F . B . B 2 -28.944 -12.628 42.337 0.4 2.81 ? C1G 11F 219 A 1 HETATM 35 C C1F 11F . A . B 2 -28.583 -11.563 41.71 0.6 19.08 ? C1F 11F 219 A 1 HETATM 36 C C1F 11F . B . B 2 -28.524 -11.575 41.921 0.4 2.77 ? C1F 11F 219 A 1 HETATM 37 C C5 11F . A . B 2 -28.033 -10.319 41.27 0.6 18.58 ? C5 11F 219 A 1 HETATM 38 C C5 11F . B . B 2 -28.03 -10.323 41.431 0.4 2 ? C5 11F 219 A 1 HETATM 39 C C6 11F . A . B 2 -28.504 -9.123 41.807 0.6 18.7 ? C6 11F 219 A 1 HETATM 40 C C6 11F . B . B 2 -28.521 -9.134 41.962 0.4 2.11 ? C6 11F 219 A 1 HETATM 41 C C1B 11F . A . B 2 -29.608 -9.111 42.867 0.6 18.54 ? C1B 11F 219 A 1 HETATM 42 C C1B 11F . B . B 2 -29.578 -9.142 43.065 0.4 2 ? C1B 11F 219 A 1 HETATM 43 N N1 11F . A . B 2 -27.976 -7.964 41.389 0.6 18.32 ? N1 11F 219 A 1 HETATM 44 N N1 11F . B . B 2 -28.052 -7.965 41.503 0.4 2 ? N1 11F 219 A 1 HETATM 45 C C2 11F . A . B 2 -27.007 -7.94 40.46 0.6 18.58 ? C2 11F 219 A 1 HETATM 46 C C2 11F . B . B 2 -27.121 -7.925 40.535 0.4 2 ? C2 11F 219 A 1 HETATM 47 N N1D 11F . A . B 2 -26.513 -6.769 40.063 0.6 18.54 ? N1D 11F 219 A 1 HETATM 48 N N1D 11F . B . B 2 -26.689 -6.741 40.098 0.4 2 ? N1D 11F 219 A 1 HETATM 49 N N3 11F . A . B 2 -26.543 -9.081 39.922 0.6 18.42 ? N3 11F 219 A 1 HETATM 50 N N3 11F . B . B 2 -26.637 -9.057 39.996 0.4 2 ? N3 11F 219 A 1 HETATM 51 C C4 11F . A . B 2 -27.027 -10.273 40.306 0.6 18.66 ? C4 11F 219 A 1 HETATM 52 C C4 11F . B . B 2 -27.064 -10.26 40.421 0.4 2.34 ? C4 11F 219 A 1 HETATM 53 N N1E 11F . A . B 2 -26.543 -11.39 39.772 0.6 18.32 ? N1E 11F 219 A 1 HETATM 54 N N1E 11F . B . B 2 -26.561 -11.369 39.882 0.4 2 ? N1E 11F 219 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #