data_3FR8 # _model_server_result.job_id zoIK17pe4ZXRF152tBk1aw _model_server_result.datetime_utc '2025-01-02 21:03:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":6061}' # _entry.id 3FR8 # _exptl.entry_id 3FR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.436 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3FR8 _cell.length_a 162.06 _cell.length_b 162.06 _cell.length_c 196.47 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 1 1_555 K O HOH . A HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 C MG MG . A MG 1 1_555 F O7 PE4 . A PE4 6061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc3 G MG MG . B MG 1 1_555 B OD1 ASP 244 B ASP 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 G MG MG . B MG 1 1_555 L O HOH . B HOH 667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc5 G MG MG . B MG 1 1_555 J O4 PEG . B PEG 6073 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc6 H MG MG . B MG 597 1_555 J O2 PEG . B PEG 6073 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? # _chem_comp.formula 'C16 H34 O8' _chem_comp.formula_weight 354.436 _chem_comp.id PE4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG4000' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PE4 sing 319 n n O1 HO1 PE4 sing 320 n n C1 C2 PE4 sing 321 n n C1 H11 PE4 sing 322 n n C1 H12 PE4 sing 323 n n C2 O2 PE4 sing 324 n n C2 H21 PE4 sing 325 n n C2 H22 PE4 sing 326 n n O2 C3 PE4 sing 327 n n C3 C4 PE4 sing 328 n n C3 H31 PE4 sing 329 n n C3 H32 PE4 sing 330 n n C4 O3 PE4 sing 331 n n C4 H41 PE4 sing 332 n n C4 H42 PE4 sing 333 n n O3 C5 PE4 sing 334 n n C5 C6 PE4 sing 335 n n C5 H51 PE4 sing 336 n n C5 H52 PE4 sing 337 n n C6 O4 PE4 sing 338 n n C6 H61 PE4 sing 339 n n C6 H62 PE4 sing 340 n n O4 C7 PE4 sing 341 n n C7 C8 PE4 sing 342 n n C7 H71 PE4 sing 343 n n C7 H72 PE4 sing 344 n n C8 O5 PE4 sing 345 n n C8 H81 PE4 sing 346 n n C8 H82 PE4 sing 347 n n O5 C9 PE4 sing 348 n n C9 C10 PE4 sing 349 n n C9 H91 PE4 sing 350 n n C9 H92 PE4 sing 351 n n C10 O6 PE4 sing 352 n n C10 H101 PE4 sing 353 n n C10 H102 PE4 sing 354 n n O6 C11 PE4 sing 355 n n C11 C12 PE4 sing 356 n n C11 H111 PE4 sing 357 n n C11 H112 PE4 sing 358 n n C12 O7 PE4 sing 359 n n C12 H121 PE4 sing 360 n n C12 H122 PE4 sing 361 n n O7 C13 PE4 sing 362 n n C13 C14 PE4 sing 363 n n C13 H131 PE4 sing 364 n n C13 H132 PE4 sing 365 n n C14 O8 PE4 sing 366 n n C14 H141 PE4 sing 367 n n C14 H142 PE4 sing 368 n n O8 C15 PE4 sing 369 n n C15 C16 PE4 sing 370 n n C15 H151 PE4 sing 371 n n C15 H152 PE4 sing 372 n n C16 H161 PE4 sing 373 n n C16 H162 PE4 sing 374 n n C16 H163 PE4 sing 375 n n # _atom_sites.entry_id 3FR8 _atom_sites.fract_transf_matrix[1][1] 0.006171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1 1 MG MG . D 3 SO4 A 1 597 1 SO4 SO4 . E 4 NDP A 1 601 601 NDP NDP . F 5 PE4 A 1 6061 6061 PE4 PE4 . G 2 MG B 1 1 1 MG MG . H 2 MG B 1 597 1 MG MG . I 4 NDP B 1 600 600 NDP NDP . J 6 PEG B 1 6073 6073 PEG PEG . K 7 HOH A 1 4 4 HOH HOH . K 7 HOH A 2 5 5 HOH HOH . K 7 HOH A 3 6 6 HOH HOH . K 7 HOH A 4 7 7 HOH HOH . K 7 HOH A 5 8 8 HOH HOH . K 7 HOH A 6 9 9 HOH HOH . K 7 HOH A 7 12 12 HOH HOH . K 7 HOH A 8 14 14 HOH HOH . K 7 HOH A 9 16 16 HOH HOH . K 7 HOH A 10 17 17 HOH HOH . K 7 HOH A 11 18 18 HOH HOH . K 7 HOH A 12 19 19 HOH HOH . K 7 HOH A 13 21 21 HOH HOH . K 7 HOH A 14 22 22 HOH HOH . K 7 HOH A 15 23 23 HOH HOH . K 7 HOH A 16 24 24 HOH HOH . K 7 HOH A 17 25 25 HOH HOH . K 7 HOH A 18 28 28 HOH HOH . K 7 HOH A 19 29 29 HOH HOH . K 7 HOH A 20 31 31 HOH HOH . K 7 HOH A 21 33 33 HOH HOH . K 7 HOH A 22 34 34 HOH HOH . K 7 HOH A 23 36 36 HOH HOH . K 7 HOH A 24 39 39 HOH HOH . K 7 HOH A 25 40 40 HOH HOH . K 7 HOH A 26 44 44 HOH HOH . K 7 HOH A 27 48 48 HOH HOH . K 7 HOH A 28 49 49 HOH HOH . K 7 HOH A 29 51 51 HOH HOH . K 7 HOH A 30 52 52 HOH HOH . K 7 HOH A 31 54 54 HOH HOH . K 7 HOH A 32 55 55 HOH HOH . K 7 HOH A 33 56 56 HOH HOH . K 7 HOH A 34 57 57 HOH HOH . K 7 HOH A 35 60 60 HOH HOH . K 7 HOH A 36 61 61 HOH HOH . K 7 HOH A 37 63 63 HOH HOH . K 7 HOH A 38 64 64 HOH HOH . K 7 HOH A 39 68 68 HOH HOH . K 7 HOH A 40 69 69 HOH HOH . K 7 HOH A 41 70 70 HOH HOH . K 7 HOH A 42 71 71 HOH HOH . K 7 HOH A 43 598 1 HOH HOH . K 7 HOH A 44 599 72 HOH HOH . K 7 HOH A 45 600 73 HOH HOH . K 7 HOH A 46 602 74 HOH HOH . K 7 HOH A 47 603 75 HOH HOH . K 7 HOH A 48 604 76 HOH HOH . K 7 HOH A 49 606 79 HOH HOH . K 7 HOH A 50 609 82 HOH HOH . K 7 HOH A 51 611 84 HOH HOH . K 7 HOH A 52 612 85 HOH HOH . K 7 HOH A 53 613 86 HOH HOH . K 7 HOH A 54 614 87 HOH HOH . K 7 HOH A 55 615 88 HOH HOH . K 7 HOH A 56 616 89 HOH HOH . K 7 HOH A 57 620 93 HOH HOH . K 7 HOH A 58 621 94 HOH HOH . K 7 HOH A 59 623 96 HOH HOH . K 7 HOH A 60 625 98 HOH HOH . K 7 HOH A 61 626 99 HOH HOH . K 7 HOH A 62 627 100 HOH HOH . K 7 HOH A 63 628 102 HOH HOH . K 7 HOH A 64 630 104 HOH HOH . K 7 HOH A 65 632 106 HOH HOH . K 7 HOH A 66 633 107 HOH HOH . K 7 HOH A 67 637 112 HOH HOH . K 7 HOH A 68 638 113 HOH HOH . K 7 HOH A 69 643 118 HOH HOH . K 7 HOH A 70 644 119 HOH HOH . K 7 HOH A 71 647 122 HOH HOH . K 7 HOH A 72 648 123 HOH HOH . K 7 HOH A 73 649 124 HOH HOH . K 7 HOH A 74 650 125 HOH HOH . K 7 HOH A 75 653 128 HOH HOH . K 7 HOH A 76 654 129 HOH HOH . K 7 HOH A 77 657 132 HOH HOH . K 7 HOH A 78 658 133 HOH HOH . K 7 HOH A 79 659 134 HOH HOH . K 7 HOH A 80 660 135 HOH HOH . K 7 HOH A 81 661 136 HOH HOH . K 7 HOH A 82 663 138 HOH HOH . K 7 HOH A 83 664 139 HOH HOH . K 7 HOH A 84 665 140 HOH HOH . K 7 HOH A 85 668 143 HOH HOH . K 7 HOH A 86 669 144 HOH HOH . K 7 HOH A 87 671 146 HOH HOH . K 7 HOH A 88 672 147 HOH HOH . K 7 HOH A 89 675 150 HOH HOH . K 7 HOH A 90 676 151 HOH HOH . K 7 HOH A 91 677 152 HOH HOH . K 7 HOH A 92 678 153 HOH HOH . K 7 HOH A 93 679 154 HOH HOH . K 7 HOH A 94 681 156 HOH HOH . K 7 HOH A 95 682 157 HOH HOH . K 7 HOH A 96 683 158 HOH HOH . K 7 HOH A 97 684 159 HOH HOH . K 7 HOH A 98 685 160 HOH HOH . K 7 HOH A 99 692 167 HOH HOH . K 7 HOH A 100 694 173 HOH HOH . K 7 HOH A 101 695 174 HOH HOH . K 7 HOH A 102 696 175 HOH HOH . K 7 HOH A 103 699 179 HOH HOH . L 7 HOH B 1 2 2 HOH HOH . L 7 HOH B 2 3 3 HOH HOH . L 7 HOH B 3 10 10 HOH HOH . L 7 HOH B 4 11 11 HOH HOH . L 7 HOH B 5 13 13 HOH HOH . L 7 HOH B 6 15 15 HOH HOH . L 7 HOH B 7 20 20 HOH HOH . L 7 HOH B 8 26 26 HOH HOH . L 7 HOH B 9 27 27 HOH HOH . L 7 HOH B 10 30 30 HOH HOH . L 7 HOH B 11 32 32 HOH HOH . L 7 HOH B 12 35 35 HOH HOH . L 7 HOH B 13 37 37 HOH HOH . L 7 HOH B 14 38 38 HOH HOH . L 7 HOH B 15 42 42 HOH HOH . L 7 HOH B 16 43 43 HOH HOH . L 7 HOH B 17 45 45 HOH HOH . L 7 HOH B 18 46 46 HOH HOH . L 7 HOH B 19 47 47 HOH HOH . L 7 HOH B 20 50 50 HOH HOH . L 7 HOH B 21 53 53 HOH HOH . L 7 HOH B 22 58 58 HOH HOH . L 7 HOH B 23 59 59 HOH HOH . L 7 HOH B 24 62 62 HOH HOH . L 7 HOH B 25 65 65 HOH HOH . L 7 HOH B 26 66 66 HOH HOH . L 7 HOH B 27 67 67 HOH HOH . L 7 HOH B 28 605 77 HOH HOH . L 7 HOH B 29 607 80 HOH HOH . L 7 HOH B 30 608 81 HOH HOH . L 7 HOH B 31 610 83 HOH HOH . L 7 HOH B 32 617 90 HOH HOH . L 7 HOH B 33 618 91 HOH HOH . L 7 HOH B 34 619 92 HOH HOH . L 7 HOH B 35 622 95 HOH HOH . L 7 HOH B 36 624 97 HOH HOH . L 7 HOH B 37 629 103 HOH HOH . L 7 HOH B 38 631 105 HOH HOH . L 7 HOH B 39 634 108 HOH HOH . L 7 HOH B 40 635 109 HOH HOH . L 7 HOH B 41 636 111 HOH HOH . L 7 HOH B 42 639 114 HOH HOH . L 7 HOH B 43 640 115 HOH HOH . L 7 HOH B 44 641 116 HOH HOH . L 7 HOH B 45 642 117 HOH HOH . L 7 HOH B 46 645 120 HOH HOH . L 7 HOH B 47 646 121 HOH HOH . L 7 HOH B 48 651 126 HOH HOH . L 7 HOH B 49 652 127 HOH HOH . L 7 HOH B 50 655 130 HOH HOH . L 7 HOH B 51 656 131 HOH HOH . L 7 HOH B 52 662 137 HOH HOH . L 7 HOH B 53 666 141 HOH HOH . L 7 HOH B 54 667 142 HOH HOH . L 7 HOH B 55 670 145 HOH HOH . L 7 HOH B 56 673 148 HOH HOH . L 7 HOH B 57 674 149 HOH HOH . L 7 HOH B 58 680 155 HOH HOH . L 7 HOH B 59 686 161 HOH HOH . L 7 HOH B 60 687 162 HOH HOH . L 7 HOH B 61 688 163 HOH HOH . L 7 HOH B 62 689 164 HOH HOH . L 7 HOH B 63 690 165 HOH HOH . L 7 HOH B 64 691 166 HOH HOH . L 7 HOH B 65 693 172 HOH HOH . L 7 HOH B 66 697 176 HOH HOH . L 7 HOH B 67 698 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O7 PE4 . . . F 5 11.218 25.059 56.962 1 59.35 ? O7 PE4 6061 A 1 HETATM 2 C C13 PE4 . . . F 5 12.182 25.734 57.779 1 59.47 ? C13 PE4 6061 A 1 HETATM 3 C C14 PE4 . . . F 5 12.373 24.963 59.079 1 59.49 ? C14 PE4 6061 A 1 HETATM 4 O O8 PE4 . . . F 5 13.49 25.511 59.788 1 59.37 ? O8 PE4 6061 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #