data_3FRA # _model_server_result.job_id 2jSmAXqYHSGnr1oyJZ1ixg _model_server_result.datetime_utc '2024-11-25 16:31:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3fra # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 3FRA # _exptl.entry_id 3FRA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 354.403 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-{[(2S)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl}pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3FRA _cell.length_a 79.2 _cell.length_b 79.2 _cell.length_c 108.531 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3FRA _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H22 N4 O3' _chem_comp.formula_weight 354.403 _chem_comp.id I2H _chem_comp.mon_nstd_flag . _chem_comp.name 5-{[(2S)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl}pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C6 I2H sing 139 n n C25 C26 I2H sing 140 n n C25 C24 I2H sing 141 n n N5 C6 I2H sing 142 n y N5 C3 I2H doub 143 n y C6 C8 I2H doub 144 n y C28 C27 I2H doub 145 n n C28 C14 I2H sing 146 n n C27 C11 I2H sing 147 n n N4 C3 I2H sing 148 n n C26 C24 I2H sing 149 n n C3 N2 I2H sing 150 n y C8 C9 I2H sing 151 n n C8 C1 I2H sing 152 n y C24 C14 I2H sing 153 n n C9 C10 I2H sing 154 n n C14 O13 I2H sing 155 n n N2 C1 I2H doub 156 n y C11 C10 I2H sing 157 n y C11 C12 I2H doub 158 n y C10 C21 I2H doub 159 n y O13 C12 I2H sing 160 n n C12 C15 I2H sing 161 n y C21 C18 I2H sing 162 n y C15 C18 I2H doub 163 n y C15 O16 I2H sing 164 n n C18 O19 I2H sing 165 n n C17 O16 I2H sing 166 n n O19 C20 I2H sing 167 n n N7 H1 I2H sing 168 n n N7 H2 I2H sing 169 n n N4 H3 I2H sing 170 n n N4 H4 I2H sing 171 n n C1 H5 I2H sing 172 n n C9 H6 I2H sing 173 n n C9 H7 I2H sing 174 n n C21 H8 I2H sing 175 n n C20 H9 I2H sing 176 n n C20 H10 I2H sing 177 n n C20 H11 I2H sing 178 n n C17 H12 I2H sing 179 n n C17 H13 I2H sing 180 n n C17 H14 I2H sing 181 n n C27 H15 I2H sing 182 n n C28 H17 I2H sing 183 n n C14 H19 I2H sing 184 n n C24 H20 I2H sing 185 n n C26 H21 I2H sing 186 n n C26 H22 I2H sing 187 n n C25 H23 I2H sing 188 n n C25 H24 I2H sing 189 n n # _atom_sites.entry_id 3FRA _atom_sites.fract_transf_matrix[1][1] 0.012626 _atom_sites.fract_transf_matrix[1][2] 0.00729 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009214 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP X 1 301 301 NAP NAP . C 3 I2H X 1 300 300 I2H INH . D 4 HOH X 1 159 1 HOH HOH . D 4 HOH X 2 160 2 HOH HOH . D 4 HOH X 3 161 3 HOH HOH . D 4 HOH X 4 162 4 HOH HOH . D 4 HOH X 5 163 5 HOH HOH . D 4 HOH X 6 164 6 HOH HOH . D 4 HOH X 7 165 7 HOH HOH . D 4 HOH X 8 166 8 HOH HOH . D 4 HOH X 9 167 9 HOH HOH . D 4 HOH X 10 168 10 HOH HOH . D 4 HOH X 11 169 11 HOH HOH . D 4 HOH X 12 170 12 HOH HOH . D 4 HOH X 13 171 13 HOH HOH . D 4 HOH X 14 172 14 HOH HOH . D 4 HOH X 15 173 15 HOH HOH . D 4 HOH X 16 174 16 HOH HOH . D 4 HOH X 17 175 17 HOH HOH . D 4 HOH X 18 176 18 HOH HOH . D 4 HOH X 19 177 19 HOH HOH . D 4 HOH X 20 178 20 HOH HOH . D 4 HOH X 21 179 21 HOH HOH . D 4 HOH X 22 180 22 HOH HOH . D 4 HOH X 23 181 23 HOH HOH . D 4 HOH X 24 182 24 HOH HOH . D 4 HOH X 25 183 25 HOH HOH . D 4 HOH X 26 184 26 HOH HOH . D 4 HOH X 27 185 27 HOH HOH . D 4 HOH X 28 186 28 HOH HOH . D 4 HOH X 29 187 30 HOH HOH . D 4 HOH X 30 188 31 HOH HOH . D 4 HOH X 31 189 32 HOH HOH . D 4 HOH X 32 190 33 HOH HOH . D 4 HOH X 33 191 34 HOH HOH . D 4 HOH X 34 192 35 HOH HOH . D 4 HOH X 35 193 36 HOH HOH . D 4 HOH X 36 194 37 HOH HOH . D 4 HOH X 37 195 38 HOH HOH . D 4 HOH X 38 196 39 HOH HOH . D 4 HOH X 39 197 40 HOH HOH . D 4 HOH X 40 198 41 HOH HOH . D 4 HOH X 41 199 42 HOH HOH . D 4 HOH X 42 200 43 HOH HOH . D 4 HOH X 43 201 44 HOH HOH . D 4 HOH X 44 202 45 HOH HOH . D 4 HOH X 45 203 46 HOH HOH . D 4 HOH X 46 204 47 HOH HOH . D 4 HOH X 47 205 48 HOH HOH . D 4 HOH X 48 206 49 HOH HOH . D 4 HOH X 49 207 50 HOH HOH . D 4 HOH X 50 208 51 HOH HOH . D 4 HOH X 51 209 52 HOH HOH . D 4 HOH X 52 210 53 HOH HOH . D 4 HOH X 53 211 54 HOH HOH . D 4 HOH X 54 212 55 HOH HOH . D 4 HOH X 55 213 56 HOH HOH . D 4 HOH X 56 214 58 HOH HOH . D 4 HOH X 57 215 59 HOH HOH . D 4 HOH X 58 216 60 HOH HOH . D 4 HOH X 59 217 61 HOH HOH . D 4 HOH X 60 218 62 HOH HOH . D 4 HOH X 61 219 64 HOH HOH . D 4 HOH X 62 220 65 HOH HOH . D 4 HOH X 63 221 66 HOH HOH . D 4 HOH X 64 222 67 HOH HOH . D 4 HOH X 65 223 68 HOH HOH . D 4 HOH X 66 224 69 HOH HOH . D 4 HOH X 67 225 70 HOH HOH . D 4 HOH X 68 226 71 HOH HOH . D 4 HOH X 69 227 72 HOH HOH . D 4 HOH X 70 228 74 HOH HOH . D 4 HOH X 71 229 75 HOH HOH . D 4 HOH X 72 230 76 HOH HOH . D 4 HOH X 73 231 77 HOH HOH . D 4 HOH X 74 232 78 HOH HOH . D 4 HOH X 75 233 79 HOH HOH . D 4 HOH X 76 234 80 HOH HOH . D 4 HOH X 77 235 81 HOH HOH . D 4 HOH X 78 236 82 HOH HOH . D 4 HOH X 79 237 83 HOH HOH . D 4 HOH X 80 238 84 HOH HOH . D 4 HOH X 81 239 85 HOH HOH . D 4 HOH X 82 240 86 HOH HOH . D 4 HOH X 83 241 87 HOH HOH . D 4 HOH X 84 242 88 HOH HOH . D 4 HOH X 85 243 89 HOH HOH . D 4 HOH X 86 244 90 HOH HOH . D 4 HOH X 87 245 91 HOH HOH . D 4 HOH X 88 246 92 HOH HOH . D 4 HOH X 89 247 93 HOH HOH . D 4 HOH X 90 248 94 HOH HOH . D 4 HOH X 91 249 95 HOH HOH . D 4 HOH X 92 250 96 HOH HOH . D 4 HOH X 93 251 97 HOH HOH . D 4 HOH X 94 252 98 HOH HOH . D 4 HOH X 95 253 99 HOH HOH . D 4 HOH X 96 254 100 HOH HOH . D 4 HOH X 97 255 101 HOH HOH . D 4 HOH X 98 256 102 HOH HOH . D 4 HOH X 99 257 103 HOH HOH . D 4 HOH X 100 258 104 HOH HOH . D 4 HOH X 101 259 105 HOH HOH . D 4 HOH X 102 260 106 HOH HOH . D 4 HOH X 103 261 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N7 I2H . . . C 3 26.426 11.801 39.259 1 41.2 ? N7 I2H 300 X 1 HETATM 2 C C6 I2H . . . C 3 27.009 10.791 40.202 1 41.28 ? C6 I2H 300 X 1 HETATM 3 N N5 I2H . . . C 3 26.617 9.462 40.111 1 41.22 ? N5 I2H 300 X 1 HETATM 4 C C3 I2H . . . C 3 27.139 8.501 40.971 1 41.36 ? C3 I2H 300 X 1 HETATM 5 N N4 I2H . . . C 3 26.693 7.077 40.849 1 41.33 ? N4 I2H 300 X 1 HETATM 6 N N2 I2H . . . C 3 28.059 8.848 41.925 1 41.43 ? N2 I2H 300 X 1 HETATM 7 C C1 I2H . . . C 3 28.475 10.208 42.039 1 41.38 ? C1 I2H 300 X 1 HETATM 8 C C8 I2H . . . C 3 27.927 11.18 41.146 1 41.67 ? C8 I2H 300 X 1 HETATM 9 C C9 I2H . . . C 3 28.327 12.554 41.231 1 42 ? C9 I2H 300 X 1 HETATM 10 C C10 I2H . . . C 3 29.496 12.738 42.177 1 42.21 ? C10 I2H 300 X 1 HETATM 11 C C21 I2H . . . C 3 29.431 13.613 43.259 1 42.32 ? C21 I2H 300 X 1 HETATM 12 C C18 I2H . . . C 3 30.56 13.766 44.137 1 42.42 ? C18 I2H 300 X 1 HETATM 13 O O19 I2H . . . C 3 30.477 14.68 45.264 1 42.23 ? O19 I2H 300 X 1 HETATM 14 C C20 I2H . . . C 3 29.109 14.963 45.838 1 42.48 ? C20 I2H 300 X 1 HETATM 15 C C11 I2H . . . C 3 30.747 11.984 41.953 1 42.12 ? C11 I2H 300 X 1 HETATM 16 C C12 I2H . . . C 3 31.876 12.175 42.88 1 42.22 ? C12 I2H 300 X 1 HETATM 17 O O13 I2H . . . C 3 33.006 11.475 42.664 1 42.32 ? O13 I2H 300 X 1 HETATM 18 C C15 I2H . . . C 3 31.775 13.024 43.91 1 42.35 ? C15 I2H 300 X 1 HETATM 19 O O16 I2H . . . C 3 32.843 13.17 44.743 1 42.23 ? O16 I2H 300 X 1 HETATM 20 C C17 I2H . . . C 3 33.91 12.397 44.561 1 42.05 ? C17 I2H 300 X 1 HETATM 21 C C27 I2H . . . C 3 30.856 11.032 40.791 1 42.35 ? C27 I2H 300 X 1 HETATM 22 C C28 I2H . . . C 3 32.213 10.333 40.738 1 42.34 ? C28 I2H 300 X 1 HETATM 23 C C14 I2H . . . C 3 33.322 11.196 41.309 1 42.83 ? C14 I2H 300 X 1 HETATM 24 C C24 I2H . . . C 3 34.661 10.45 41.226 1 43.32 ? C24 I2H 300 X 1 HETATM 25 C C26 I2H . . . C 3 34.647 8.972 40.961 1 43.33 ? C26 I2H 300 X 1 HETATM 26 C C25 I2H . . . C 3 35.096 9.924 39.888 1 43.55 ? C25 I2H 300 X 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 26 #