data_3FRA
#
_model_server_result.job_id            43Au7UJ5Fga9kUinbeMWgw 
_model_server_result.datetime_utc      '2024-11-14 07:09:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fra 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":300}' 
#
_entry.id    3FRA 
#
_exptl.entry_id    3FRA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              354.403 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-{[(2S)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl}pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3FRA 
_cell.length_a            79.2 
_cell.length_b            79.2 
_cell.length_c            108.531 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FRA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C19 H22 N4 O3' 
_chem_comp.formula_weight    354.403 
_chem_comp.id                I2H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-{[(2S)-2-cyclopropyl-7,8-dimethoxy-2H-chromen-5-yl]methyl}pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N7 C6 I2H sing 139 n n 
C25 C26 I2H sing 140 n n 
C25 C24 I2H sing 141 n n 
N5 C6 I2H sing 142 n y 
N5 C3 I2H doub 143 n y 
C6 C8 I2H doub 144 n y 
C28 C27 I2H doub 145 n n 
C28 C14 I2H sing 146 n n 
C27 C11 I2H sing 147 n n 
N4 C3 I2H sing 148 n n 
C26 C24 I2H sing 149 n n 
C3 N2 I2H sing 150 n y 
C8 C9 I2H sing 151 n n 
C8 C1 I2H sing 152 n y 
C24 C14 I2H sing 153 n n 
C9 C10 I2H sing 154 n n 
C14 O13 I2H sing 155 n n 
N2 C1 I2H doub 156 n y 
C11 C10 I2H sing 157 n y 
C11 C12 I2H doub 158 n y 
C10 C21 I2H doub 159 n y 
O13 C12 I2H sing 160 n n 
C12 C15 I2H sing 161 n y 
C21 C18 I2H sing 162 n y 
C15 C18 I2H doub 163 n y 
C15 O16 I2H sing 164 n n 
C18 O19 I2H sing 165 n n 
C17 O16 I2H sing 166 n n 
O19 C20 I2H sing 167 n n 
N7 H1 I2H sing 168 n n 
N7 H2 I2H sing 169 n n 
N4 H3 I2H sing 170 n n 
N4 H4 I2H sing 171 n n 
C1 H5 I2H sing 172 n n 
C9 H6 I2H sing 173 n n 
C9 H7 I2H sing 174 n n 
C21 H8 I2H sing 175 n n 
C20 H9 I2H sing 176 n n 
C20 H10 I2H sing 177 n n 
C20 H11 I2H sing 178 n n 
C17 H12 I2H sing 179 n n 
C17 H13 I2H sing 180 n n 
C17 H14 I2H sing 181 n n 
C27 H15 I2H sing 182 n n 
C28 H17 I2H sing 183 n n 
C14 H19 I2H sing 184 n n 
C24 H20 I2H sing 185 n n 
C26 H21 I2H sing 186 n n 
C26 H22 I2H sing 187 n n 
C25 H23 I2H sing 188 n n 
C25 H24 I2H sing 189 n n 
#
_atom_sites.entry_id                     3FRA 
_atom_sites.fract_transf_matrix[1][1]    0.012626 
_atom_sites.fract_transf_matrix[1][2]    0.00729 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01458 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009214 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP X 1 301 301 NAP NAP . 
C 3 I2H X 1 300 300 I2H INH . 
D 4 HOH X 1 159 1 HOH HOH . 
D 4 HOH X 2 160 2 HOH HOH . 
D 4 HOH X 3 161 3 HOH HOH . 
D 4 HOH X 4 162 4 HOH HOH . 
D 4 HOH X 5 163 5 HOH HOH . 
D 4 HOH X 6 164 6 HOH HOH . 
D 4 HOH X 7 165 7 HOH HOH . 
D 4 HOH X 8 166 8 HOH HOH . 
D 4 HOH X 9 167 9 HOH HOH . 
D 4 HOH X 10 168 10 HOH HOH . 
D 4 HOH X 11 169 11 HOH HOH . 
D 4 HOH X 12 170 12 HOH HOH . 
D 4 HOH X 13 171 13 HOH HOH . 
D 4 HOH X 14 172 14 HOH HOH . 
D 4 HOH X 15 173 15 HOH HOH . 
D 4 HOH X 16 174 16 HOH HOH . 
D 4 HOH X 17 175 17 HOH HOH . 
D 4 HOH X 18 176 18 HOH HOH . 
D 4 HOH X 19 177 19 HOH HOH . 
D 4 HOH X 20 178 20 HOH HOH . 
D 4 HOH X 21 179 21 HOH HOH . 
D 4 HOH X 22 180 22 HOH HOH . 
D 4 HOH X 23 181 23 HOH HOH . 
D 4 HOH X 24 182 24 HOH HOH . 
D 4 HOH X 25 183 25 HOH HOH . 
D 4 HOH X 26 184 26 HOH HOH . 
D 4 HOH X 27 185 27 HOH HOH . 
D 4 HOH X 28 186 28 HOH HOH . 
D 4 HOH X 29 187 30 HOH HOH . 
D 4 HOH X 30 188 31 HOH HOH . 
D 4 HOH X 31 189 32 HOH HOH . 
D 4 HOH X 32 190 33 HOH HOH . 
D 4 HOH X 33 191 34 HOH HOH . 
D 4 HOH X 34 192 35 HOH HOH . 
D 4 HOH X 35 193 36 HOH HOH . 
D 4 HOH X 36 194 37 HOH HOH . 
D 4 HOH X 37 195 38 HOH HOH . 
D 4 HOH X 38 196 39 HOH HOH . 
D 4 HOH X 39 197 40 HOH HOH . 
D 4 HOH X 40 198 41 HOH HOH . 
D 4 HOH X 41 199 42 HOH HOH . 
D 4 HOH X 42 200 43 HOH HOH . 
D 4 HOH X 43 201 44 HOH HOH . 
D 4 HOH X 44 202 45 HOH HOH . 
D 4 HOH X 45 203 46 HOH HOH . 
D 4 HOH X 46 204 47 HOH HOH . 
D 4 HOH X 47 205 48 HOH HOH . 
D 4 HOH X 48 206 49 HOH HOH . 
D 4 HOH X 49 207 50 HOH HOH . 
D 4 HOH X 50 208 51 HOH HOH . 
D 4 HOH X 51 209 52 HOH HOH . 
D 4 HOH X 52 210 53 HOH HOH . 
D 4 HOH X 53 211 54 HOH HOH . 
D 4 HOH X 54 212 55 HOH HOH . 
D 4 HOH X 55 213 56 HOH HOH . 
D 4 HOH X 56 214 58 HOH HOH . 
D 4 HOH X 57 215 59 HOH HOH . 
D 4 HOH X 58 216 60 HOH HOH . 
D 4 HOH X 59 217 61 HOH HOH . 
D 4 HOH X 60 218 62 HOH HOH . 
D 4 HOH X 61 219 64 HOH HOH . 
D 4 HOH X 62 220 65 HOH HOH . 
D 4 HOH X 63 221 66 HOH HOH . 
D 4 HOH X 64 222 67 HOH HOH . 
D 4 HOH X 65 223 68 HOH HOH . 
D 4 HOH X 66 224 69 HOH HOH . 
D 4 HOH X 67 225 70 HOH HOH . 
D 4 HOH X 68 226 71 HOH HOH . 
D 4 HOH X 69 227 72 HOH HOH . 
D 4 HOH X 70 228 74 HOH HOH . 
D 4 HOH X 71 229 75 HOH HOH . 
D 4 HOH X 72 230 76 HOH HOH . 
D 4 HOH X 73 231 77 HOH HOH . 
D 4 HOH X 74 232 78 HOH HOH . 
D 4 HOH X 75 233 79 HOH HOH . 
D 4 HOH X 76 234 80 HOH HOH . 
D 4 HOH X 77 235 81 HOH HOH . 
D 4 HOH X 78 236 82 HOH HOH . 
D 4 HOH X 79 237 83 HOH HOH . 
D 4 HOH X 80 238 84 HOH HOH . 
D 4 HOH X 81 239 85 HOH HOH . 
D 4 HOH X 82 240 86 HOH HOH . 
D 4 HOH X 83 241 87 HOH HOH . 
D 4 HOH X 84 242 88 HOH HOH . 
D 4 HOH X 85 243 89 HOH HOH . 
D 4 HOH X 86 244 90 HOH HOH . 
D 4 HOH X 87 245 91 HOH HOH . 
D 4 HOH X 88 246 92 HOH HOH . 
D 4 HOH X 89 247 93 HOH HOH . 
D 4 HOH X 90 248 94 HOH HOH . 
D 4 HOH X 91 249 95 HOH HOH . 
D 4 HOH X 92 250 96 HOH HOH . 
D 4 HOH X 93 251 97 HOH HOH . 
D 4 HOH X 94 252 98 HOH HOH . 
D 4 HOH X 95 253 99 HOH HOH . 
D 4 HOH X 96 254 100 HOH HOH . 
D 4 HOH X 97 255 101 HOH HOH . 
D 4 HOH X 98 256 102 HOH HOH . 
D 4 HOH X 99 257 103 HOH HOH . 
D 4 HOH X 100 258 104 HOH HOH . 
D 4 HOH X 101 259 105 HOH HOH . 
D 4 HOH X 102 260 106 HOH HOH . 
D 4 HOH X 103 261 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N7 I2H . . . C 3 26.426 11.801 39.259 1 41.2 ? N7 I2H 300 X 1 
HETATM 2 C C6 I2H . . . C 3 27.009 10.791 40.202 1 41.28 ? C6 I2H 300 X 1 
HETATM 3 N N5 I2H . . . C 3 26.617 9.462 40.111 1 41.22 ? N5 I2H 300 X 1 
HETATM 4 C C3 I2H . . . C 3 27.139 8.501 40.971 1 41.36 ? C3 I2H 300 X 1 
HETATM 5 N N4 I2H . . . C 3 26.693 7.077 40.849 1 41.33 ? N4 I2H 300 X 1 
HETATM 6 N N2 I2H . . . C 3 28.059 8.848 41.925 1 41.43 ? N2 I2H 300 X 1 
HETATM 7 C C1 I2H . . . C 3 28.475 10.208 42.039 1 41.38 ? C1 I2H 300 X 1 
HETATM 8 C C8 I2H . . . C 3 27.927 11.18 41.146 1 41.67 ? C8 I2H 300 X 1 
HETATM 9 C C9 I2H . . . C 3 28.327 12.554 41.231 1 42 ? C9 I2H 300 X 1 
HETATM 10 C C10 I2H . . . C 3 29.496 12.738 42.177 1 42.21 ? C10 I2H 300 X 1 
HETATM 11 C C21 I2H . . . C 3 29.431 13.613 43.259 1 42.32 ? C21 I2H 300 X 1 
HETATM 12 C C18 I2H . . . C 3 30.56 13.766 44.137 1 42.42 ? C18 I2H 300 X 1 
HETATM 13 O O19 I2H . . . C 3 30.477 14.68 45.264 1 42.23 ? O19 I2H 300 X 1 
HETATM 14 C C20 I2H . . . C 3 29.109 14.963 45.838 1 42.48 ? C20 I2H 300 X 1 
HETATM 15 C C11 I2H . . . C 3 30.747 11.984 41.953 1 42.12 ? C11 I2H 300 X 1 
HETATM 16 C C12 I2H . . . C 3 31.876 12.175 42.88 1 42.22 ? C12 I2H 300 X 1 
HETATM 17 O O13 I2H . . . C 3 33.006 11.475 42.664 1 42.32 ? O13 I2H 300 X 1 
HETATM 18 C C15 I2H . . . C 3 31.775 13.024 43.91 1 42.35 ? C15 I2H 300 X 1 
HETATM 19 O O16 I2H . . . C 3 32.843 13.17 44.743 1 42.23 ? O16 I2H 300 X 1 
HETATM 20 C C17 I2H . . . C 3 33.91 12.397 44.561 1 42.05 ? C17 I2H 300 X 1 
HETATM 21 C C27 I2H . . . C 3 30.856 11.032 40.791 1 42.35 ? C27 I2H 300 X 1 
HETATM 22 C C28 I2H . . . C 3 32.213 10.333 40.738 1 42.34 ? C28 I2H 300 X 1 
HETATM 23 C C14 I2H . . . C 3 33.322 11.196 41.309 1 42.83 ? C14 I2H 300 X 1 
HETATM 24 C C24 I2H . . . C 3 34.661 10.45 41.226 1 43.32 ? C24 I2H 300 X 1 
HETATM 25 C C26 I2H . . . C 3 34.647 8.972 40.961 1 43.33 ? C26 I2H 300 X 1 
HETATM 26 C C25 I2H . . . C 3 35.096 9.924 39.888 1 43.55 ? C25 I2H 300 X 1 
#
_model_server_stats.io_time_ms              103 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#