data_3FRA
#
_model_server_result.job_id            4GVrtZFXODM3J94sLxDFQg 
_model_server_result.datetime_utc      '2024-11-14 07:15:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3fra 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    3FRA 
#
_exptl.entry_id    3FRA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3FRA 
_cell.length_a            79.2 
_cell.length_b            79.2 
_cell.length_c            108.531 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3FRA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 275 n n 
PA O2A NAP sing 276 n n 
PA O5B NAP sing 277 n n 
PA O3 NAP sing 278 n n 
O2A HOA2 NAP sing 279 n n 
O5B C5B NAP sing 280 n n 
C5B C4B NAP sing 281 n n 
C5B H51A NAP sing 282 n n 
C5B H52A NAP sing 283 n n 
C4B O4B NAP sing 284 n n 
C4B C3B NAP sing 285 n n 
C4B H4B NAP sing 286 n n 
O4B C1B NAP sing 287 n n 
C3B O3B NAP sing 288 n n 
C3B C2B NAP sing 289 n n 
C3B H3B NAP sing 290 n n 
O3B HO3A NAP sing 291 n n 
C2B O2B NAP sing 292 n n 
C2B C1B NAP sing 293 n n 
C2B H2B NAP sing 294 n n 
O2B P2B NAP sing 295 n n 
C1B N9A NAP sing 296 n n 
C1B H1B NAP sing 297 n n 
N9A C8A NAP sing 298 n y 
N9A C4A NAP sing 299 n y 
C8A N7A NAP doub 300 n y 
C8A H8A NAP sing 301 n n 
N7A C5A NAP sing 302 n y 
C5A C6A NAP sing 303 n y 
C5A C4A NAP doub 304 n y 
C6A N6A NAP sing 305 n n 
C6A N1A NAP doub 306 n y 
N6A H61A NAP sing 307 n n 
N6A H62A NAP sing 308 n n 
N1A C2A NAP sing 309 n y 
C2A N3A NAP doub 310 n y 
C2A H2A NAP sing 311 n n 
N3A C4A NAP sing 312 n y 
O3 PN NAP sing 313 n n 
PN O1N NAP doub 314 n n 
PN O2N NAP sing 315 n n 
PN O5D NAP sing 316 n n 
O5D C5D NAP sing 317 n n 
C5D C4D NAP sing 318 n n 
C5D H51N NAP sing 319 n n 
C5D H52N NAP sing 320 n n 
C4D O4D NAP sing 321 n n 
C4D C3D NAP sing 322 n n 
C4D H4D NAP sing 323 n n 
O4D C1D NAP sing 324 n n 
C3D O3D NAP sing 325 n n 
C3D C2D NAP sing 326 n n 
C3D H3D NAP sing 327 n n 
O3D HO3N NAP sing 328 n n 
C2D O2D NAP sing 329 n n 
C2D C1D NAP sing 330 n n 
C2D H2D NAP sing 331 n n 
O2D HO2N NAP sing 332 n n 
C1D N1N NAP sing 333 n n 
C1D H1D NAP sing 334 n n 
N1N C2N NAP sing 335 n y 
N1N C6N NAP doub 336 n y 
C2N C3N NAP doub 337 n y 
C2N H2N NAP sing 338 n n 
C3N C7N NAP sing 339 n n 
C3N C4N NAP sing 340 n y 
C7N O7N NAP doub 341 n n 
C7N N7N NAP sing 342 n n 
N7N H71N NAP sing 343 n n 
N7N H72N NAP sing 344 n n 
C4N C5N NAP doub 345 n y 
C4N H4N NAP sing 346 n n 
C5N C6N NAP sing 347 n y 
C5N H5N NAP sing 348 n n 
C6N H6N NAP sing 349 n n 
P2B O1X NAP doub 350 n n 
P2B O2X NAP sing 351 n n 
P2B O3X NAP sing 352 n n 
O2X HOP2 NAP sing 353 n n 
O3X HOP3 NAP sing 354 n n 
#
_atom_sites.entry_id                     3FRA 
_atom_sites.fract_transf_matrix[1][1]    0.012626 
_atom_sites.fract_transf_matrix[1][2]    0.00729 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01458 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009214 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP X 1 301 301 NAP NAP . 
C 3 I2H X 1 300 300 I2H INH . 
D 4 HOH X 1 159 1 HOH HOH . 
D 4 HOH X 2 160 2 HOH HOH . 
D 4 HOH X 3 161 3 HOH HOH . 
D 4 HOH X 4 162 4 HOH HOH . 
D 4 HOH X 5 163 5 HOH HOH . 
D 4 HOH X 6 164 6 HOH HOH . 
D 4 HOH X 7 165 7 HOH HOH . 
D 4 HOH X 8 166 8 HOH HOH . 
D 4 HOH X 9 167 9 HOH HOH . 
D 4 HOH X 10 168 10 HOH HOH . 
D 4 HOH X 11 169 11 HOH HOH . 
D 4 HOH X 12 170 12 HOH HOH . 
D 4 HOH X 13 171 13 HOH HOH . 
D 4 HOH X 14 172 14 HOH HOH . 
D 4 HOH X 15 173 15 HOH HOH . 
D 4 HOH X 16 174 16 HOH HOH . 
D 4 HOH X 17 175 17 HOH HOH . 
D 4 HOH X 18 176 18 HOH HOH . 
D 4 HOH X 19 177 19 HOH HOH . 
D 4 HOH X 20 178 20 HOH HOH . 
D 4 HOH X 21 179 21 HOH HOH . 
D 4 HOH X 22 180 22 HOH HOH . 
D 4 HOH X 23 181 23 HOH HOH . 
D 4 HOH X 24 182 24 HOH HOH . 
D 4 HOH X 25 183 25 HOH HOH . 
D 4 HOH X 26 184 26 HOH HOH . 
D 4 HOH X 27 185 27 HOH HOH . 
D 4 HOH X 28 186 28 HOH HOH . 
D 4 HOH X 29 187 30 HOH HOH . 
D 4 HOH X 30 188 31 HOH HOH . 
D 4 HOH X 31 189 32 HOH HOH . 
D 4 HOH X 32 190 33 HOH HOH . 
D 4 HOH X 33 191 34 HOH HOH . 
D 4 HOH X 34 192 35 HOH HOH . 
D 4 HOH X 35 193 36 HOH HOH . 
D 4 HOH X 36 194 37 HOH HOH . 
D 4 HOH X 37 195 38 HOH HOH . 
D 4 HOH X 38 196 39 HOH HOH . 
D 4 HOH X 39 197 40 HOH HOH . 
D 4 HOH X 40 198 41 HOH HOH . 
D 4 HOH X 41 199 42 HOH HOH . 
D 4 HOH X 42 200 43 HOH HOH . 
D 4 HOH X 43 201 44 HOH HOH . 
D 4 HOH X 44 202 45 HOH HOH . 
D 4 HOH X 45 203 46 HOH HOH . 
D 4 HOH X 46 204 47 HOH HOH . 
D 4 HOH X 47 205 48 HOH HOH . 
D 4 HOH X 48 206 49 HOH HOH . 
D 4 HOH X 49 207 50 HOH HOH . 
D 4 HOH X 50 208 51 HOH HOH . 
D 4 HOH X 51 209 52 HOH HOH . 
D 4 HOH X 52 210 53 HOH HOH . 
D 4 HOH X 53 211 54 HOH HOH . 
D 4 HOH X 54 212 55 HOH HOH . 
D 4 HOH X 55 213 56 HOH HOH . 
D 4 HOH X 56 214 58 HOH HOH . 
D 4 HOH X 57 215 59 HOH HOH . 
D 4 HOH X 58 216 60 HOH HOH . 
D 4 HOH X 59 217 61 HOH HOH . 
D 4 HOH X 60 218 62 HOH HOH . 
D 4 HOH X 61 219 64 HOH HOH . 
D 4 HOH X 62 220 65 HOH HOH . 
D 4 HOH X 63 221 66 HOH HOH . 
D 4 HOH X 64 222 67 HOH HOH . 
D 4 HOH X 65 223 68 HOH HOH . 
D 4 HOH X 66 224 69 HOH HOH . 
D 4 HOH X 67 225 70 HOH HOH . 
D 4 HOH X 68 226 71 HOH HOH . 
D 4 HOH X 69 227 72 HOH HOH . 
D 4 HOH X 70 228 74 HOH HOH . 
D 4 HOH X 71 229 75 HOH HOH . 
D 4 HOH X 72 230 76 HOH HOH . 
D 4 HOH X 73 231 77 HOH HOH . 
D 4 HOH X 74 232 78 HOH HOH . 
D 4 HOH X 75 233 79 HOH HOH . 
D 4 HOH X 76 234 80 HOH HOH . 
D 4 HOH X 77 235 81 HOH HOH . 
D 4 HOH X 78 236 82 HOH HOH . 
D 4 HOH X 79 237 83 HOH HOH . 
D 4 HOH X 80 238 84 HOH HOH . 
D 4 HOH X 81 239 85 HOH HOH . 
D 4 HOH X 82 240 86 HOH HOH . 
D 4 HOH X 83 241 87 HOH HOH . 
D 4 HOH X 84 242 88 HOH HOH . 
D 4 HOH X 85 243 89 HOH HOH . 
D 4 HOH X 86 244 90 HOH HOH . 
D 4 HOH X 87 245 91 HOH HOH . 
D 4 HOH X 88 246 92 HOH HOH . 
D 4 HOH X 89 247 93 HOH HOH . 
D 4 HOH X 90 248 94 HOH HOH . 
D 4 HOH X 91 249 95 HOH HOH . 
D 4 HOH X 92 250 96 HOH HOH . 
D 4 HOH X 93 251 97 HOH HOH . 
D 4 HOH X 94 252 98 HOH HOH . 
D 4 HOH X 95 253 99 HOH HOH . 
D 4 HOH X 96 254 100 HOH HOH . 
D 4 HOH X 97 255 101 HOH HOH . 
D 4 HOH X 98 256 102 HOH HOH . 
D 4 HOH X 99 257 103 HOH HOH . 
D 4 HOH X 100 258 104 HOH HOH . 
D 4 HOH X 101 259 105 HOH HOH . 
D 4 HOH X 102 260 106 HOH HOH . 
D 4 HOH X 103 261 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 23.993 21.468 42.751 1 33.78 ? PA NAP 301 X 1 
HETATM 2 O O1A NAP . . . B 2 25.251 20.7 42.58 1 33.53 ? O1A NAP 301 X 1 
HETATM 3 O O2A NAP . . . B 2 22.868 20.929 41.962 1 33.28 ? O2A NAP 301 X 1 
HETATM 4 O O5B NAP . . . B 2 24.279 23.007 42.401 1 34.54 ? O5B NAP 301 X 1 
HETATM 5 C C5B NAP . . . B 2 23.279 23.995 42.539 1 34.59 ? C5B NAP 301 X 1 
HETATM 6 C C4B NAP . . . B 2 23.785 25.208 41.782 1 34.57 ? C4B NAP 301 X 1 
HETATM 7 O O4B NAP . . . B 2 23.844 24.926 40.396 1 34.7 ? O4B NAP 301 X 1 
HETATM 8 C C3B NAP . . . B 2 22.922 26.45 41.909 1 34.6 ? C3B NAP 301 X 1 
HETATM 9 O O3B NAP . . . B 2 23.145 27.144 43.115 1 34.43 ? O3B NAP 301 X 1 
HETATM 10 C C2B NAP . . . B 2 23.383 27.202 40.685 1 34.79 ? C2B NAP 301 X 1 
HETATM 11 O O2B NAP . . . B 2 24.669 27.739 40.879 1 34.94 ? O2B NAP 301 X 1 
HETATM 12 C C1B NAP . . . B 2 23.521 26.098 39.661 1 35.1 ? C1B NAP 301 X 1 
HETATM 13 N N9A NAP . . . B 2 22.26 25.96 38.908 1 35.17 ? N9A NAP 301 X 1 
HETATM 14 C C8A NAP . . . B 2 21.317 24.973 39.038 1 35.12 ? C8A NAP 301 X 1 
HETATM 15 N N7A NAP . . . B 2 20.316 25.218 38.165 1 35.12 ? N7A NAP 301 X 1 
HETATM 16 C C5A NAP . . . B 2 20.602 26.353 37.483 1 35.4 ? C5A NAP 301 X 1 
HETATM 17 C C6A NAP . . . B 2 19.929 27.051 36.484 1 35.25 ? C6A NAP 301 X 1 
HETATM 18 N N6A NAP . . . B 2 18.762 26.618 36.013 1 35.11 ? N6A NAP 301 X 1 
HETATM 19 N N1A NAP . . . B 2 20.488 28.203 35.972 1 35.27 ? N1A NAP 301 X 1 
HETATM 20 C C2A NAP . . . B 2 21.702 28.655 36.447 1 35.23 ? C2A NAP 301 X 1 
HETATM 21 N N3A NAP . . . B 2 22.363 27.963 37.437 1 35.19 ? N3A NAP 301 X 1 
HETATM 22 C C4A NAP . . . B 2 21.822 26.83 37.945 1 35.35 ? C4A NAP 301 X 1 
HETATM 23 O O3 NAP . . . B 2 23.635 21.582 44.314 1 33.73 ? O3 NAP 301 X 1 
HETATM 24 P PN NAP . . . B 2 22.558 20.857 45.262 1 33.32 ? PN NAP 301 X 1 
HETATM 25 O O1N NAP . . . B 2 21.246 20.875 44.582 1 33.95 ? O1N NAP 301 X 1 
HETATM 26 O O2N NAP . . . B 2 22.709 21.474 46.599 1 33.87 ? O2N NAP 301 X 1 
HETATM 27 O O5D NAP . . . B 2 23.134 19.361 45.336 1 33.18 ? O5D NAP 301 X 1 
HETATM 28 C C5D NAP . . . B 2 24.4 19.15 45.933 1 33.14 ? C5D NAP 301 X 1 
HETATM 29 C C4D NAP . . . B 2 24.415 17.809 46.653 1 33.13 ? C4D NAP 301 X 1 
HETATM 30 O O4D NAP . . . B 2 24.283 16.755 45.712 1 32.83 ? O4D NAP 301 X 1 
HETATM 31 C C3D NAP . . . B 2 25.716 17.553 47.404 1 33.07 ? C3D NAP 301 X 1 
HETATM 32 O O3D NAP . . . B 2 25.453 16.978 48.663 1 32.97 ? O3D NAP 301 X 1 
HETATM 33 C C2D NAP . . . B 2 26.439 16.53 46.569 1 33.08 ? C2D NAP 301 X 1 
HETATM 34 O O2D NAP . . . B 2 27.292 15.749 47.374 1 33.36 ? O2D NAP 301 X 1 
HETATM 35 C C1D NAP . . . B 2 25.242 15.753 46.031 1 33.07 ? C1D NAP 301 X 1 
HETATM 36 N N1N NAP . . . B 2 25.554 14.944 44.841 1 33.36 ? N1N NAP 301 X 1 
HETATM 37 C C2N NAP . . . B 2 25.275 13.588 44.881 1 33.23 ? C2N NAP 301 X 1 
HETATM 38 C C3N NAP . . . B 2 25.467 12.823 43.729 1 33.11 ? C3N NAP 301 X 1 
HETATM 39 C C7N NAP . . . B 2 25.167 11.392 43.749 1 32.79 ? C7N NAP 301 X 1 
HETATM 40 O O7N NAP . . . B 2 25.253 10.648 42.668 1 32.52 ? O7N NAP 301 X 1 
HETATM 41 N N7N NAP . . . B 2 24.784 10.753 44.856 1 32.74 ? N7N NAP 301 X 1 
HETATM 42 C C4N NAP . . . B 2 25.929 13.433 42.557 1 33.24 ? C4N NAP 301 X 1 
HETATM 43 C C5N NAP . . . B 2 26.196 14.797 42.536 1 33.21 ? C5N NAP 301 X 1 
HETATM 44 C C6N NAP . . . B 2 26.004 15.562 43.68 1 33.3 ? C6N NAP 301 X 1 
HETATM 45 P P2B NAP . . . B 2 24.899 29.252 41.373 1 34.89 ? P2B NAP 301 X 1 
HETATM 46 O O1X NAP . . . B 2 24.284 30.166 40.346 1 34.73 ? O1X NAP 301 X 1 
HETATM 47 O O2X NAP . . . B 2 26.387 29.511 41.455 1 35.18 ? O2X NAP 301 X 1 
HETATM 48 O O3X NAP . . . B 2 24.264 29.462 42.722 1 34.84 ? O3X NAP 301 X 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#